RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-218ENST00000540963 XPO5Q9HAV4 1204 aaKnown RBP eCLIP33.16■■■□□ 2.9
CHFR-218ENST00000540963 TREML2Q5T2D2 321 aa33.15■■■□□ 2.9
CHFR-218ENST00000540963 ANKLE1Q8NAG6 615 aa33.15■■■□□ 2.9
CHFR-218ENST00000540963 SLURP2P0DP57 97 aa33.14■■■□□ 2.9
CHFR-218ENST00000540963 MTX1Q13505 466 aa33.14■■■□□ 2.9
CHFR-218ENST00000540963 ZNF280CQ8ND82 737 aa33.14■■■□□ 2.9
CHFR-218ENST00000540963 NECAB2Q7Z6G3 386 aa33.13■■■□□ 2.89
CHFR-218ENST00000540963 ZNF384Q8TF68 577 aa33.13■■■□□ 2.89
CHFR-218ENST00000540963 MEIS3Q99687 375 aa33.13■■■□□ 2.89
CHFR-218ENST00000540963 ALPK3Q96L96 1907 aa33.12■■■□□ 2.89
CHFR-218ENST00000540963 SPP2Q13103 211 aa33.12■■■□□ 2.89
CHFR-218ENST00000540963 CDCA7LQ96GN5 454 aa33.12■■■□□ 2.89
CHFR-218ENST00000540963 XRN2Q9H0D6 950 aaKnown RBP eCLIP33.12■■■□□ 2.893e-7■■■■□ 21.6
CHFR-218ENST00000540963 FRMD4AQ9P2Q2 1039 aaPredicted RBP33.12■■■□□ 2.89
CHFR-218ENST00000540963 HMGCRP04035 888 aa33.11■■■□□ 2.89
CHFR-218ENST00000540963 GNAI3P08754 354 aa33.11■■■□□ 2.89
CHFR-218ENST00000540963 TFCP2Q12800 502 aa33.11■■■□□ 2.89
CHFR-218ENST00000540963 CCDC84Q86UT8 332 aaPredicted RBP33.11■■■□□ 2.89
CHFR-218ENST00000540963 NSUN4Q96CB9 384 aaKnown RBP33.11■■■□□ 2.89
CHFR-218ENST00000540963 PAWRQ96IZ0 340 aaKnown RBP33.11■■■□□ 2.89
CHFR-218ENST00000540963 TAOK2Q9UL54 1235 aa33.11■■■□□ 2.89
CHFR-218ENST00000540963 SRGAP3O43295 1099 aa33.1■■■□□ 2.89
CHFR-218ENST00000540963 CAP2P40123 477 aa33.1■■■□□ 2.89
CHFR-218ENST00000540963 SH3D19Q5HYK7 790 aa33.1■■■□□ 2.89
CHFR-218ENST00000540963 HMG20BQ9P0W2 317 aa33.1■■■□□ 2.89
CHFR-218ENST00000540963 HERC5Q9UII4 1024 aaKnown RBP33.1■■■□□ 2.89
CHFR-218ENST00000540963 SPATA5Q8NB90 893 aa33.09■■■□□ 2.89
CHFR-218ENST00000540963 ARHGAP45Q92619 1136 aa33.09■■■□□ 2.89
CHFR-218ENST00000540963 USP17L5A8MUK1 530 aa33.08■■■□□ 2.89
CHFR-218ENST00000540963 AS3MTQ9HBK9 375 aa33.08■■■□□ 2.89
CHFR-218ENST00000540963 GJD2Q9UKL4 321 aa33.08■■■□□ 2.89
CHFR-218ENST00000540963 RPTORQ8N122 1335 aa33.07■■■□□ 2.88
CHFR-218ENST00000540963 FAM196BA6NMK8 535 aa33.07■■■□□ 2.88
CHFR-218ENST00000540963 ASCC2Q9H1I8 757 aaPredicted RBP33.07■■■□□ 2.88
CHFR-218ENST00000540963 ARID4AP29374 1257 aaPredicted RBP33.06■■■□□ 2.88
CHFR-218ENST00000540963 BMP8BP34820 402 aa33.06■■■□□ 2.88
CHFR-218ENST00000540963 HMGCS2P54868 508 aa33.06■■■□□ 2.88
CHFR-218ENST00000540963 NEUROD6Q96NK8 337 aa33.06■■■□□ 2.88
CHFR-218ENST00000540963 MORF4L1Q9UBU8 362 aa33.06■■■□□ 2.88
CHFR-218ENST00000540963 HMX1Q9NP08 348 aaPredicted RBP33.05■■■□□ 2.88
CHFR-218ENST00000540963 STAP2Q9UGK3 403 aa33.05■■■□□ 2.88
CHFR-218ENST00000540963 GORABQ5T7V8 394 aa33.04■■■□□ 2.88
CHFR-218ENST00000540963 WDR18Q9BV38 432 aa33.04■■■□□ 2.88
CHFR-218ENST00000540963 DHX36Q9H2U1 1008 aaKnown RBP33.04■■■□□ 2.88
CHFR-218ENST00000540963 PI4KBQ9UBF8 816 aa33.04■■■□□ 2.88
CHFR-218ENST00000540963 LAMA3Q16787 3333 aa33.04■■■□□ 2.88
CHFR-218ENST00000540963 PLXNB2O15031 1838 aa33.03■■■□□ 2.88
CHFR-218ENST00000540963 GPR153Q6NV75 609 aa33.03■■■□□ 2.88
CHFR-218ENST00000540963 GDF15Q99988 308 aa33.03■■■□□ 2.88
CHFR-218ENST00000540963 NBPF3Q9H094 633 aa33.03■■■□□ 2.88
CHFR-218ENST00000540963 RAI14Q9P0K7 980 aa33.03■■■□□ 2.88
CHFR-218ENST00000540963 TEX11Q8IYF3 940 aa33.02■■■□□ 2.88
CHFR-218ENST00000540963 DIS3LQ8TF46 1054 aaKnown RBP33.02■■■□□ 2.88
CHFR-218ENST00000540963 ASNSP08243 561 aa33.01■■■□□ 2.87
CHFR-218ENST00000540963 UQCRFS1P1P0C7P4 283 aa33.01■■■□□ 2.87
CHFR-218ENST00000540963 HOXA7P31268 230 aaPredicted RBP33.01■■■□□ 2.87
CHFR-218ENST00000540963 RRP1BQ14684 758 aaKnown RBP33.01■■■□□ 2.87
CHFR-218ENST00000540963 PI16Q6UXB8 463 aa33.01■■■□□ 2.87
CHFR-218ENST00000540963 TBC1D9Q6ZT07 1266 aa33.01■■■□□ 2.87
CHFR-218ENST00000540963 NOL10Q9BSC4 688 aaKnown RBP33.01■■■□□ 2.87
CHFR-218ENST00000540963 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP33.01■■■□□ 2.87
CHFR-218ENST00000540963 SOX1O00570 391 aaPredicted RBP33■■■□□ 2.87
CHFR-218ENST00000540963 GINM1Q9NU53 330 aa33■■■□□ 2.87
CHFR-218ENST00000540963 LRP2BPQ9P2M1 347 aa33■■■□□ 2.87
CHFR-218ENST00000540963 SIPA1L1O43166 1804 aa33■■■□□ 2.87
CHFR-218ENST00000540963 COL6A3P12111 3177 aa32.99■■■□□ 2.87
CHFR-218ENST00000540963 IGSF3O75054 1194 aa32.99■■■□□ 2.87
CHFR-218ENST00000540963 XRCC5P13010 732 aaKnown RBP32.99■■■□□ 2.87
CHFR-218ENST00000540963 PLCG2P16885 1265 aa32.99■■■□□ 2.87
CHFR-218ENST00000540963 RARSP54136 660 aaKnown RBP32.99■■■□□ 2.87
CHFR-218ENST00000540963 BACE1P56817 501 aa32.99■■■□□ 2.87
CHFR-218ENST00000540963 SLC17A8Q8NDX2 589 aa32.99■■■□□ 2.87
CHFR-218ENST00000540963 OGDHLQ9ULD0 1010 aa32.99■■■□□ 2.87
CHFR-218ENST00000540963 DDX60LQ5H9U9 1706 aaKnown RBP32.99■■■□□ 2.87
CHFR-218ENST00000540963 C19orf81C9J6K1 198 aa32.98■■■□□ 2.87
CHFR-218ENST00000540963 BAG3O95817 575 aa32.98■■■□□ 2.87
CHFR-218ENST00000540963 MCAMP43121 646 aa32.98■■■□□ 2.87
CHFR-218ENST00000540963 IRX3P78415 501 aaPredicted RBP32.98■■■□□ 2.87
CHFR-218ENST00000540963 MAP3K21Q5TCX8 1036 aa32.98■■■□□ 2.87
CHFR-218ENST00000540963 METTL16Q86W50 562 aaKnown RBP32.98■■■□□ 2.87
CHFR-218ENST00000540963 SOCS4Q8WXH5 440 aa32.98■■■□□ 2.87
CHFR-218ENST00000540963 TMOD4Q9NZQ9 345 aa32.98■■■□□ 2.87
CHFR-218ENST00000540963 MAST2Q6P0Q8 1798 aa32.98■■■□□ 2.87
CHFR-218ENST00000540963 FOCADQ5VW36 1801 aa32.98■■■□□ 2.87
CHFR-218ENST00000540963 TRMT44Q8IYL2 757 aaKnown RBP32.97■■■□□ 2.87
CHFR-218ENST00000540963 CDK5RAP2Q96SN8 1893 aa32.97■■■□□ 2.87
CHFR-218ENST00000540963 MNX1P50219 401 aaPredicted RBP32.96■■■□□ 2.87
CHFR-218ENST00000540963 PPP4CP60510 307 aa32.96■■■□□ 2.87
CHFR-218ENST00000540963 MTMR2Q13614 643 aa32.96■■■□□ 2.87
CHFR-218ENST00000540963 FOXP4Q8IVH2 680 aaPredicted RBP32.96■■■□□ 2.87
CHFR-218ENST00000540963 C7orf61Q8IZ16 206 aa32.96■■■□□ 2.87
CHFR-218ENST00000540963 SH3RF3Q8TEJ3 882 aaPredicted RBP32.96■■■□□ 2.87
CHFR-218ENST00000540963 TRIB2Q92519 343 aa32.96■■■□□ 2.87
CHFR-218ENST00000540963 LRCH3Q96II8 777 aa32.96■■■□□ 2.87
CHFR-218ENST00000540963 C11orf49Q9H6J7 331 aa32.96■■■□□ 2.87
CHFR-218ENST00000540963 G3BP1Q13283 466 aaKnown RBP eCLIP32.95■■■□□ 2.87
CHFR-218ENST00000540963 GPRC5AQ8NFJ5 357 aa32.95■■■□□ 2.87
CHFR-218ENST00000540963 NUDT12Q9BQG2 462 aa32.95■■■□□ 2.87
CHFR-218ENST00000540963 GNAI2P04899 355 aa32.94■■■□□ 2.86
CHFR-218ENST00000540963 TRIM32Q13049 653 aa32.94■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms