RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 TSPYL6Q8N831 410 aa7.76□□□□□ -1.17
USP28-207ENST00000538475 ZSCAN1Q8NBB4 408 aa7.76□□□□□ -1.17
USP28-207ENST00000538475 CCDC191Q8NCU4 936 aa7.76□□□□□ -1.17
USP28-207ENST00000538475 OTUD7AQ8TE49 926 aaPredicted RBP7.76□□□□□ -1.17
USP28-207ENST00000538475 GLMNQ92990 594 aa7.76□□□□□ -1.17
USP28-207ENST00000538475 CHAMP1Q96JM3 812 aa7.76□□□□□ -1.17
USP28-207ENST00000538475 SPATA32Q96LK8 384 aa7.76□□□□□ -1.17
USP28-207ENST00000538475 CNTNAP3BQ96NU0 1288 aa7.76□□□□□ -1.17
USP28-207ENST00000538475 COL25A1Q9BXS0 654 aaPredicted RBP7.76□□□□□ -1.17
USP28-207ENST00000538475 CNTNAP3Q9BZ76 1288 aa7.76□□□□□ -1.17
USP28-207ENST00000538475 ACBD3Q9H3P7 528 aa7.76□□□□□ -1.17
USP28-207ENST00000538475 BCCIPQ9P287 314 aaKnown RBP eCLIP7.76□□□□□ -1.17
USP28-207ENST00000538475 SERTAD1Q9UHV2 236 aa7.76□□□□□ -1.17
USP28-207ENST00000538475 RRP15Q9Y3B9 282 aaKnown RBP7.76□□□□□ -1.17
USP28-207ENST00000538475 JRKLQ9Y4A0 524 aa7.76□□□□□ -1.17
USP28-207ENST00000538475 HRH3Q9Y5N1 445 aa7.76□□□□□ -1.17
USP28-207ENST00000538475 SPATA31D1Q6ZQQ2 1576 aa7.76□□□□□ -1.17
USP28-207ENST00000538475 PTPRMP28827 1452 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 A6NJR5 290 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 BECN2A8MW95 431 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 H7C1W4 665 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 TADA3O75528 432 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 ATP2B1P20020 1258 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 SCNN1DP51172 638 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 TRDNQ13061 729 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 SMC1AQ14683 1233 aaKnown RBP7.75□□□□□ -1.17
USP28-207ENST00000538475 ZRSR1Q15695 479 aaKnown RBP7.75□□□□□ -1.17
USP28-207ENST00000538475 ERCC6LQ2NKX8 1250 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 LARP1BQ659C4 914 aaKnown RBP7.75□□□□□ -1.17
USP28-207ENST00000538475 SYT10Q6XYQ8 523 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 C8orf58Q8NAV2 365 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 FHDC1Q9C0D6 1143 aaPredicted RBP7.75□□□□□ -1.17
USP28-207ENST00000538475 LSG1Q9H089 658 aaKnown RBP7.75□□□□□ -1.17
USP28-207ENST00000538475 GBP3Q9H0R5 595 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 DACT1Q9NYF0 836 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 NRBP1Q9UHY1 535 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 MYO5BQ9ULV0 1848 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 ERCC6L2Q5T890 1561 aa7.75□□□□□ -1.17
USP28-207ENST00000538475 CEP170BQ9Y4F5 1589 aaPredicted RBP7.75□□□□□ -1.17
USP28-207ENST00000538475 CCDC196A0A1B0GTZ2 297 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 A6NNZ2 444 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 ERLIN1O75477 346 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 F11P03951 625 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 ZKSCAN1P17029 563 aaPredicted RBP7.74□□□□□ -1.17
USP28-207ENST00000538475 IL13P35225 146 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 GSCP56915 257 aaPredicted RBP7.74□□□□□ -1.17
USP28-207ENST00000538475 CORO7P57737 925 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 NAA30Q147X3 362 aaPredicted RBP7.74□□□□□ -1.17
USP28-207ENST00000538475 CCDC144BQ3MJ40 725 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 TUBB8Q3ZCM7 444 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 CC2D1AQ6P1N0 951 aaPredicted RBP7.74□□□□□ -1.17
USP28-207ENST00000538475 TICAM2Q86XR7 235 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 TRIM50Q86XT4 487 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 EFCAB13Q8IY85 973 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 CCDC144CPQ8IYA2 1237 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 TRIM22Q8IYM9 498 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.74□□□□□ -1.17
USP28-207ENST00000538475 LEO1Q8WVC0 666 aaPredicted RBP7.74□□□□□ -1.17
USP28-207ENST00000538475 GMCL1Q96IK5 515 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 PPP1R13BQ96KQ4 1090 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 CALR3Q96L12 384 aaKnown RBP7.74□□□□□ -1.17
USP28-207ENST00000538475 UPF3BQ9BZI7 483 aaKnown RBP7.74□□□□□ -1.17
USP28-207ENST00000538475 PDRG1Q9NUG6 133 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 CUEDC1Q9NWM3 386 aaPredicted RBP7.74□□□□□ -1.17
USP28-207ENST00000538475 BABAM1Q9NWV8 329 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 HDAC5Q9UQL6 1122 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 PCDHGA11Q9Y5H2 935 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 EDC4Q6P2E9 1401 aaKnown RBP7.74□□□□□ -1.17
USP28-207ENST00000538475 CHD1O14646 1710 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 FMN2Q9NZ56 1722 aa7.74□□□□□ -1.17
USP28-207ENST00000538475 LAMA4Q16363 1823 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 SBNO1A3KN83 1393 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 USP17L3A6NCW0 530 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 USP17L4A6NCW7 530 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 MAP2K7O14733 419 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 CBFA2T2O43439 604 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 ATP9BO43861 1147 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 TBC1D8O95759 1140 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 LIG1P18858 919 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 SFPQP23246 707 aaKnown RBP eCLIP7.73□□□□□ -1.17
USP28-207ENST00000538475 CALRP27797 417 aaKnown RBP7.73□□□□□ -1.17
USP28-207ENST00000538475 OAS2P29728 719 aaKnown RBP7.73□□□□□ -1.17
USP28-207ENST00000538475 USP5P45974 858 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 SMTNP53814 917 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 EIF5P55010 431 aaKnown RBP7.73□□□□□ -1.17
USP28-207ENST00000538475 C4orf17Q53FE4 359 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 USP17L2Q6R6M4 530 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 MMS22LQ6ZRQ5 1243 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 USP17L1Q7RTZ2 530 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 REXO1L1PQ8IX06 675 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 SSH3Q8TE77 659 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 RHBDD1Q8TEB9 315 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 ERCC4Q92889 916 aaPredicted RBP7.73□□□□□ -1.17
USP28-207ENST00000538475 GTF3C6Q969F1 213 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 SMARCE1Q969G3 411 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 UCN2Q96RP3 112 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 MEIS3Q99687 375 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 LLPHQ9BRT6 129 aaKnown RBP7.73□□□□□ -1.17
USP28-207ENST00000538475 GGNBP2Q9H3C7 697 aa7.73□□□□□ -1.17
USP28-207ENST00000538475 GPAMQ9HCL2 828 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms