RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 KRT25Q7Z3Z0 450 aa20.28■□□□□ 0.84
SFSWAP-203ENST00000535236 IGSF22Q8N9C0 903 aa20.28■□□□□ 0.84
SFSWAP-203ENST00000535236 ZNF594Q96JF6 807 aaPredicted RBP20.28■□□□□ 0.84
SFSWAP-203ENST00000535236 USP26Q9BXU7 913 aa20.28■□□□□ 0.84
SFSWAP-203ENST00000535236 CSGALNACT2Q8N6G5 542 aa20.27■□□□□ 0.84
SFSWAP-203ENST00000535236 VPS18Q9P253 973 aa20.27■□□□□ 0.84
SFSWAP-203ENST00000535236 RFX1P22670 979 aa20.27■□□□□ 0.84
SFSWAP-203ENST00000535236 SNX29Q8TEQ0 813 aa20.27■□□□□ 0.84
SFSWAP-203ENST00000535236 LPIN2Q92539 896 aa20.27■□□□□ 0.84
SFSWAP-203ENST00000535236 USH1GQ495M9 461 aa20.27■□□□□ 0.84
SFSWAP-203ENST00000535236 UBL4BQ8N7F7 174 aa20.27■□□□□ 0.84
SFSWAP-203ENST00000535236 LRWD1Q9UFC0 647 aa20.27■□□□□ 0.84
SFSWAP-203ENST00000535236 ZNF365Q70YC5 407 aa20.27■□□□□ 0.84
SFSWAP-203ENST00000535236 NIM1KQ8IY84 436 aa20.27■□□□□ 0.84
SFSWAP-203ENST00000535236 PRAG1Q86YV5 1406 aa20.27■□□□□ 0.83
SFSWAP-203ENST00000535236 LPXNO60711 386 aa20.27■□□□□ 0.83
SFSWAP-203ENST00000535236 BABAM1Q9NWV8 329 aa20.27■□□□□ 0.83
SFSWAP-203ENST00000535236 A0A1W2PP64 1363 aa20.26■□□□□ 0.83
SFSWAP-203ENST00000535236 NOL3O60936 208 aaKnown RBP20.26■□□□□ 0.83
SFSWAP-203ENST00000535236 NBPF11Q86T75 865 aa20.26■□□□□ 0.83
SFSWAP-203ENST00000535236 SMC5Q8IY18 1101 aa20.26■□□□□ 0.83
SFSWAP-203ENST00000535236 STIM2Q9P246 746 aa20.26■□□□□ 0.83
SFSWAP-203ENST00000535236 DNM3Q9UQ16 869 aa20.26■□□□□ 0.83
SFSWAP-203ENST00000535236 ZNF608Q9ULD9 1512 aaPredicted RBP20.26■□□□□ 0.83
SFSWAP-203ENST00000535236 TCP10Q12799 353 aa20.26■□□□□ 0.83
SFSWAP-203ENST00000535236 TCIRG1Q13488 830 aa20.26■□□□□ 0.83
SFSWAP-203ENST00000535236 EBAG9O00559 213 aa20.26■□□□□ 0.83
SFSWAP-203ENST00000535236 RLBP1P12271 317 aa20.26■□□□□ 0.83
SFSWAP-203ENST00000535236 DIS3L2Q8IYB7 885 aaKnown RBP20.26■□□□□ 0.83
SFSWAP-203ENST00000535236 LZTS2Q9BRK4 669 aa20.26■□□□□ 0.83
SFSWAP-203ENST00000535236 LLPHQ9BRT6 129 aaKnown RBP20.26■□□□□ 0.83
SFSWAP-203ENST00000535236 SYCP2Q9BX26 1530 aa20.25■□□□□ 0.83
SFSWAP-203ENST00000535236 GABPAQ06546 454 aa20.25■□□□□ 0.83
SFSWAP-203ENST00000535236 G2E3Q7L622 706 aa20.25■□□□□ 0.83
SFSWAP-203ENST00000535236 ACTN4O43707 911 aaKnown RBP20.25■□□□□ 0.83
SFSWAP-203ENST00000535236 IRX3P78415 501 aaPredicted RBP20.25■□□□□ 0.83
SFSWAP-203ENST00000535236 MAPK8IP1Q9UQF2 711 aa20.25■□□□□ 0.83
SFSWAP-203ENST00000535236 FAM98CQ17RN3 349 aaKnown RBP20.25■□□□□ 0.83
SFSWAP-203ENST00000535236 MYCT1Q8N699 235 aa20.25■□□□□ 0.83
SFSWAP-203ENST00000535236 CCDC125Q86Z20 511 aa20.25■□□□□ 0.83
SFSWAP-203ENST00000535236 TBC1D31Q96DN5 1066 aa20.25■□□□□ 0.83
SFSWAP-203ENST00000535236 ARID4AP29374 1257 aaPredicted RBP20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 CTDSPL2Q05D32 466 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 CYP26C1Q6V0L0 522 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 FNBP4Q8N3X1 1017 aaPredicted RBP20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 KLHDC4Q8TBB5 520 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 SYNRGQ9UMZ2 1314 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 PAK1Q13153 545 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 CFBP00751 764 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 HERC4Q5GLZ8 1057 aaPredicted RBP20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 MAPKAPK5Q8IW41 473 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 NSMCE1Q8WV22 266 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 FAM184BQ9ULE4 1060 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 CUTAO60888 179 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 KRT19P08727 400 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 ITIH3Q06033 890 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 DLGAP5Q15398 846 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 INTS8Q75QN2 995 aaKnown RBP20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 VPS52Q8N1B4 723 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 SPATA5Q8NB90 893 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 SLC52A2Q9HAB3 445 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 MROH5Q6ZUA9 1318 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 PARD3Q8TEW0 1356 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 HOXB7P09629 217 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 IRX5P78411 483 aaPredicted RBP20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 FAM76AQ8TAV0 307 aa20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.24■□□□□ 0.83
SFSWAP-203ENST00000535236 C8orf34Q49A92 452 aa20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 POLR2DO15514 142 aaKnown RBP20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 A1BGP04217 495 aa20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.23■□□□□ 0.834e-7■■■□□ 17.6
SFSWAP-203ENST00000535236 EIF2AK4Q9P2K8 1649 aaKnown RBP20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 EIF4G3O43432 1585 aaKnown RBP20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 EXOC3O60645 756 aa20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 ALDH1B1P30837 517 aa20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 HSPA1LP34931 641 aa20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 CALCRLQ16602 461 aa20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 DCUN1D2Q6PH85 259 aa20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 IBTKQ9P2D0 1353 aaPredicted RBP20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 RAPGEF6Q8TEU7 1601 aa20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 XRCC6P12956 609 aaKnown RBP eCLIP20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 BIRC2Q13490 618 aa20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 SPOUT1Q5T280 376 aaKnown RBP20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 MRRFQ96E11 262 aaKnown RBP20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 NCOA5Q9HCD5 579 aaKnown RBP20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 TBX22Q9Y458 520 aa20.23■□□□□ 0.83
SFSWAP-203ENST00000535236 PPP2R5BQ15173 497 aa20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 MICALL1Q8N3F8 863 aa20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 NUP58Q9BVL2 599 aa20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 SBNO1A3KN83 1393 aa20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 GIPC1O14908 333 aa20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 UTP14CQ5TAP6 766 aaKnown RBP20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 CCDC24Q8N4L8 307 aa20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 TBC1D22AQ8WUA7 517 aa20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 ZBTB9Q96C00 473 aa20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 CTTNBP2NLQ9P2B4 639 aa20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 UTP11Q9Y3A2 253 aaKnown RBP20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 CIB2O75838 187 aa20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 CD19P15391 556 aa20.22■□□□□ 0.83
SFSWAP-203ENST00000535236 HDXQ7Z353 690 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms