RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 SEMA6CQ9H3T2 930 aa6.26□□□□□ -1.41
CD44-233ENST00000531141 FAM95CA0A1B0GW59 222 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 GFRA2O00451 464 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 GSC2O15499 205 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 DYRK3O43781 588 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 CDK8P49336 464 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 PDE4BQ07343 736 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 RSPO4Q2I0M5 234 aaPredicted RBP6.25□□□□□ -1.41
CD44-233ENST00000531141 PAOXQ6QHF9 649 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 C12orf40Q86WS4 652 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 SMYD4Q8IYR2 804 aaPredicted RBP6.25□□□□□ -1.41
CD44-233ENST00000531141 ISL2Q96A47 359 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 SPATA32Q96LK8 384 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 FAM83CQ9BQN1 747 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 WNT10AQ9GZT5 417 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 C7orf69Q9H7B7 122 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 DAGLAQ9Y4D2 1042 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 CSADQ9Y600 493 aa6.25□□□□□ -1.41
CD44-233ENST00000531141 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.24□□□□□ -1.41
CD44-233ENST00000531141 TLR3O15455 904 aaKnown RBP6.24□□□□□ -1.41
CD44-233ENST00000531141 CRKP46108 304 aa6.24□□□□□ -1.41
CD44-233ENST00000531141 GJA8P48165 433 aa6.24□□□□□ -1.41
CD44-233ENST00000531141 ETF1P62495 437 aaKnown RBP6.24□□□□□ -1.41
CD44-233ENST00000531141 FBXO27Q8NI29 283 aa6.24□□□□□ -1.41
CD44-233ENST00000531141 ZNF507Q8TCN5 953 aa6.24□□□□□ -1.41
CD44-233ENST00000531141 PSMG3-AS1Q96PY0 264 aa6.24□□□□□ -1.41
CD44-233ENST00000531141 KRTAP9-2Q9BYQ4 174 aa6.24□□□□□ -1.41
CD44-233ENST00000531141 STOML1Q9UBI4 398 aa6.24□□□□□ -1.41
CD44-233ENST00000531141 K7ELQ4 463 aaPredicted RBP6.23□□□□□ -1.41
CD44-233ENST00000531141 RNGTTO60942 597 aaKnown RBP6.23□□□□□ -1.41
CD44-233ENST00000531141 NFICP08651 508 aa6.23□□□□□ -1.41
CD44-233ENST00000531141 PAK2Q13177 524 aa6.23□□□□□ -1.41
CD44-233ENST00000531141 GPRASP2Q96D09 838 aa6.23□□□□□ -1.41
CD44-233ENST00000531141 EAF1Q96JC9 268 aaPredicted RBP6.23□□□□□ -1.41
CD44-233ENST00000531141 SSU72Q9NP77 194 aaKnown RBP6.23□□□□□ -1.41
CD44-233ENST00000531141 UBP1Q9NZI7 540 aa6.23□□□□□ -1.41
CD44-233ENST00000531141 ADAM30Q9UKF2 790 aa6.23□□□□□ -1.41
CD44-233ENST00000531141 PCOLCE2Q9UKZ9 415 aa6.23□□□□□ -1.41
CD44-233ENST00000531141 PRR36Q9H6K5 1346 aa6.23□□□□□ -1.41
CD44-233ENST00000531141 PGRP06401 933 aa6.22□□□□□ -1.41
CD44-233ENST00000531141 GRK4P32298 578 aa6.22□□□□□ -1.41
CD44-233ENST00000531141 CAP2P40123 477 aa6.22□□□□□ -1.41
CD44-233ENST00000531141 COL9A2Q14055 689 aaPredicted RBP6.22□□□□□ -1.41
CD44-233ENST00000531141 RNF43Q68DV7 783 aa6.22□□□□□ -1.41
CD44-233ENST00000531141 CDC37L1Q7L3B6 337 aa6.22□□□□□ -1.41
CD44-233ENST00000531141 SLITRK4Q8IW52 837 aa6.22□□□□□ -1.41
CD44-233ENST00000531141 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.22□□□□□ -1.41
CD44-233ENST00000531141 Q8N3U1 123 aa6.22□□□□□ -1.41
CD44-233ENST00000531141 RASGRP4Q8TDF6 673 aa6.22□□□□□ -1.41
CD44-233ENST00000531141 NKD1Q969G9 470 aa6.22□□□□□ -1.41
CD44-233ENST00000531141 DBNDD2Q9BQY9 259 aa6.22□□□□□ -1.41
CD44-233ENST00000531141 ACBD3Q9H3P7 528 aa6.22□□□□□ -1.41
CD44-233ENST00000531141 PRKAG2Q9UGJ0 569 aa6.22□□□□□ -1.41
CD44-233ENST00000531141 INPP5FQ9Y2H2 1132 aa6.22□□□□□ -1.41
CD44-233ENST00000531141 POLR3KQ9Y2Y1 108 aaPredicted RBP6.22□□□□□ -1.41
CD44-233ENST00000531141 HMX2A2RU54 273 aa6.21□□□□□ -1.42
CD44-233ENST00000531141 FSTP19883 344 aa6.21□□□□□ -1.42
CD44-233ENST00000531141 NFKBIBQ15653 356 aa6.21□□□□□ -1.42
CD44-233ENST00000531141 SEZ6Q53EL9 994 aa6.21□□□□□ -1.42
CD44-233ENST00000531141 SEZ6L2Q6UXD5 910 aa6.21□□□□□ -1.42
CD44-233ENST00000531141 HID1Q8IV36 788 aa6.21□□□□□ -1.42
CD44-233ENST00000531141 REXO1Q8N1G1 1221 aaKnown RBP6.21□□□□□ -1.42
CD44-233ENST00000531141 BRMS1Q9HCU9 246 aa6.21□□□□□ -1.42
CD44-233ENST00000531141 KRTAP9-6A0A140TA67 174 aa6.2□□□□□ -1.42
CD44-233ENST00000531141 DYNC1LI2O43237 492 aaPredicted RBP6.2□□□□□ -1.42
CD44-233ENST00000531141 GRIN3BO60391 1043 aa6.2□□□□□ -1.42
CD44-233ENST00000531141 HTR3BO95264 441 aa6.2□□□□□ -1.42
CD44-233ENST00000531141 IGLV1-40P01703 118 aa6.2□□□□□ -1.42
CD44-233ENST00000531141 PLCG1P19174 1290 aa6.2□□□□□ -1.42
CD44-233ENST00000531141 ZNF165P49910 485 aa6.2□□□□□ -1.42
CD44-233ENST00000531141 ZC3H6P61129 1189 aaKnown RBP6.2□□□□□ -1.42
CD44-233ENST00000531141 NFIAQ12857 509 aa6.2□□□□□ -1.42
CD44-233ENST00000531141 GNL2Q13823 731 aaKnown RBP6.2□□□□□ -1.42
CD44-233ENST00000531141 MLECQ14165 292 aa6.2□□□□□ -1.42
CD44-233ENST00000531141 CPSF6Q16630 551 aaKnown RBP eCLIP6.2□□□□□ -1.42
CD44-233ENST00000531141 TMEM201Q5SNT2 666 aa6.2□□□□□ -1.42
CD44-233ENST00000531141 ARMCX6Q7L4S7 300 aa6.2□□□□□ -1.42
CD44-233ENST00000531141 UBE3DQ7Z6J8 389 aa6.2□□□□□ -1.42
CD44-233ENST00000531141 SLC51AQ86UW1 340 aa6.2□□□□□ -1.42
CD44-233ENST00000531141 MRPL41Q8IXM3 137 aaKnown RBP6.2□□□□□ -1.42
CD44-233ENST00000531141 FBRSQ9HAH7 460 aa6.2□□□□□ -1.42
CD44-233ENST00000531141 LRIG2O94898 1065 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 ATE1O95260 518 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 FURINP09958 794 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 IMPDH2P12268 514 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 ZAR1Q86SH2 424 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 GIMAP7Q8NHV1 300 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 TMEM87BQ96K49 555 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 TINF2Q9BSI4 451 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 FOXQ1Q9C009 403 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 EHMT1Q9H9B1 1298 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 CAPN10Q9HC96 672 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 C1GALT1Q9NS00 363 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 REV1Q9UBZ9 1251 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 PCDHB14Q9Y5E9 798 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 CORINQ9Y5Q5 1042 aa6.19□□□□□ -1.42
CD44-233ENST00000531141 CST3P01034 146 aaPredicted RBP6.18□□□□□ -1.42
CD44-233ENST00000531141 TNNI2P48788 182 aa6.18□□□□□ -1.42
CD44-233ENST00000531141 CYP27A1Q02318 531 aa6.18□□□□□ -1.42
CD44-233ENST00000531141 CDK5R2Q13319 367 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms