RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 PNMA6EA0A0J9YXQ4 647 aa14.9□□□□□ -0.02
USH1C-208ENST00000529563 TBC1D12O60347 775 aa14.9□□□□□ -0.02
USH1C-208ENST00000529563 NPM3O75607 178 aaKnown RBP14.9□□□□□ -0.02
USH1C-208ENST00000529563 PLCG2P16885 1265 aa14.9□□□□□ -0.02
USH1C-208ENST00000529563 ARID4AP29374 1257 aaPredicted RBP14.9□□□□□ -0.02
USH1C-208ENST00000529563 GJA8P48165 433 aa14.9□□□□□ -0.02
USH1C-208ENST00000529563 FLT3LGP49771 235 aa14.9□□□□□ -0.02
USH1C-208ENST00000529563 MAP3K10Q02779 954 aa14.9□□□□□ -0.02
USH1C-208ENST00000529563 SPP2Q13103 211 aa14.9□□□□□ -0.02
USH1C-208ENST00000529563 ZKSCAN2Q63HK3 967 aa14.9□□□□□ -0.02
USH1C-208ENST00000529563 NAA16Q6N069 864 aaPredicted RBP14.9□□□□□ -0.02
USH1C-208ENST00000529563 FTSJ3Q8IY81 847 aaKnown RBP14.9□□□□□ -0.02
USH1C-208ENST00000529563 CRACR2BQ8N4Y2 399 aaPredicted RBP14.9□□□□□ -0.02
USH1C-208ENST00000529563 TBC1D2Q9BYX2 928 aa14.9□□□□□ -0.02
USH1C-208ENST00000529563 AS3MTQ9HBK9 375 aa14.9□□□□□ -0.02
USH1C-208ENST00000529563 SNRKQ9NRH2 765 aa14.9□□□□□ -0.02
USH1C-208ENST00000529563 FARP2O94887 1054 aaPredicted RBP14.89□□□□□ -0.03
USH1C-208ENST00000529563 TFRCP02786 760 aaKnown RBP14.89□□□□□ -0.03
USH1C-208ENST00000529563 ELNP15502 786 aa14.89□□□□□ -0.03
USH1C-208ENST00000529563 MCAMP43121 646 aa14.89□□□□□ -0.03
USH1C-208ENST00000529563 HMGCS2P54868 508 aa14.89□□□□□ -0.03
USH1C-208ENST00000529563 TREML2Q5T2D2 321 aa14.89□□□□□ -0.03
USH1C-208ENST00000529563 PROCA1Q8NCQ7 364 aaPredicted RBP14.89□□□□□ -0.03
USH1C-208ENST00000529563 ZNF280CQ8ND82 737 aa14.89□□□□□ -0.03
USH1C-208ENST00000529563 U2AF1L4Q8WU68 220 aaKnown RBP14.89□□□□□ -0.03
USH1C-208ENST00000529563 SHISA4Q96DD7 197 aa14.89□□□□□ -0.03
USH1C-208ENST00000529563 UNC93B1Q9H1C4 597 aa14.89□□□□□ -0.03
USH1C-208ENST00000529563 AATFQ9NY61 560 aaKnown RBP eCLIP14.89□□□□□ -0.03
USH1C-208ENST00000529563 NR2E3Q9Y5X4 410 aa14.89□□□□□ -0.03
USH1C-208ENST00000529563 MKI67P46013 3256 aaKnown RBP14.88□□□□□ -0.03
USH1C-208ENST00000529563 USP17L5A8MUK1 530 aa14.88□□□□□ -0.03
USH1C-208ENST00000529563 INHAP05111 366 aa14.88□□□□□ -0.03
USH1C-208ENST00000529563 CAP2P40123 477 aa14.88□□□□□ -0.03
USH1C-208ENST00000529563 CHRDL2Q6WN34 429 aa14.88□□□□□ -0.03
USH1C-208ENST00000529563 SH3RF3Q8TEJ3 882 aaPredicted RBP14.88□□□□□ -0.03
USH1C-208ENST00000529563 DHX36Q9H2U1 1008 aaKnown RBP14.88□□□□□ -0.03
USH1C-208ENST00000529563 TMOD4Q9NZQ9 345 aa14.88□□□□□ -0.03
USH1C-208ENST00000529563 PI4KBQ9UBF8 816 aa14.88□□□□□ -0.03
USH1C-208ENST00000529563 HERC5Q9UII4 1024 aaKnown RBP14.88□□□□□ -0.03
USH1C-208ENST00000529563 TNNQ9UQP3 1299 aa14.88□□□□□ -0.03
USH1C-208ENST00000529563 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.88□□□□□ -0.03
USH1C-208ENST00000529563 SURF6O75683 361 aaKnown RBP14.87□□□□□ -0.03
USH1C-208ENST00000529563 GCLCP48506 637 aaPredicted RBP14.87□□□□□ -0.03
USH1C-208ENST00000529563 IRX3P78415 501 aaPredicted RBP14.87□□□□□ -0.03
USH1C-208ENST00000529563 FAM110CQ1W6H9 321 aa14.87□□□□□ -0.03
USH1C-208ENST00000529563 TNNI3KQ59H18 835 aa14.87□□□□□ -0.03
USH1C-208ENST00000529563 MAPKAPK5Q8IW41 473 aa14.87□□□□□ -0.03
USH1C-208ENST00000529563 CCAR1Q8IX12 1150 aaKnown RBP14.87□□□□□ -0.03
USH1C-208ENST00000529563 TMEM57Q8N5G2 664 aa14.87□□□□□ -0.03
USH1C-208ENST00000529563 ZNF384Q8TF68 577 aa14.87□□□□□ -0.03
USH1C-208ENST00000529563 TGFBRAP1Q8WUH2 860 aa14.87□□□□□ -0.03
USH1C-208ENST00000529563 FPGT-TNNI3KV9GXZ4 949 aa14.87□□□□□ -0.03
USH1C-208ENST00000529563 MGAMO43451 1857 aa14.86□□□□□ -0.03
USH1C-208ENST00000529563 BRCA2P51587 3418 aa14.86□□□□□ -0.03
USH1C-208ENST00000529563 CEP290O15078 2479 aa14.86□□□□□ -0.03
USH1C-208ENST00000529563 SGPL1O95470 568 aa14.86□□□□□ -0.03
USH1C-208ENST00000529563 HLA-DOAP06340 250 aa14.86□□□□□ -0.03
USH1C-208ENST00000529563 FXR1P51114 621 aaKnown RBP eCLIP14.86□□□□□ -0.03
USH1C-208ENST00000529563 IRF5Q13568 498 aa14.86□□□□□ -0.03
USH1C-208ENST00000529563 ITPRIPQ8IWB1 547 aa14.86□□□□□ -0.03
USH1C-208ENST00000529563 PXYLP1Q8TE99 480 aa14.86□□□□□ -0.03
USH1C-208ENST00000529563 DEFB118Q96PH6 123 aa14.86□□□□□ -0.03
USH1C-208ENST00000529563 DBNDD2Q9BQY9 259 aa14.86□□□□□ -0.03
USH1C-208ENST00000529563 CWC22Q9HCG8 908 aaKnown RBP14.86□□□□□ -0.03
USH1C-208ENST00000529563 COL2A1P02458 1487 aaPredicted RBP14.85□□□□□ -0.03
USH1C-208ENST00000529563 EVI5O60447 810 aa14.85□□□□□ -0.03
USH1C-208ENST00000529563 ASNSP08243 561 aa14.85□□□□□ -0.03
USH1C-208ENST00000529563 C1orf115Q9H7X2 142 aa14.85□□□□□ -0.03
USH1C-208ENST00000529563 GPR108Q9NPR9 543 aa14.85□□□□□ -0.03
USH1C-208ENST00000529563 CAPN2P17655 700 aa14.84□□□□□ -0.03
USH1C-208ENST00000529563 MTMR2Q13614 643 aa14.84□□□□□ -0.03
USH1C-208ENST00000529563 ASCC2Q9H1I8 757 aaPredicted RBP14.84□□□□□ -0.03
USH1C-208ENST00000529563 SAP30BPQ9UHR5 308 aaKnown RBP14.84□□□□□ -0.03
USH1C-208ENST00000529563 IDH1O75874 414 aaKnown RBP14.83□□□□□ -0.04
USH1C-208ENST00000529563 GDF11O95390 407 aa14.83□□□□□ -0.04
USH1C-208ENST00000529563 CYP7A1P22680 504 aa14.83□□□□□ -0.04
USH1C-208ENST00000529563 ZAP70P43403 619 aa14.83□□□□□ -0.04
USH1C-208ENST00000529563 USP5P45974 858 aa14.83□□□□□ -0.04
USH1C-208ENST00000529563 ATP8B2P98198 1209 aa14.83□□□□□ -0.04
USH1C-208ENST00000529563 POLA2Q14181 598 aa14.83□□□□□ -0.04
USH1C-208ENST00000529563 FOXP4Q8IVH2 680 aaPredicted RBP14.83□□□□□ -0.04
USH1C-208ENST00000529563 PALD1Q9ULE6 856 aa14.83□□□□□ -0.04
USH1C-208ENST00000529563 PTPRFP10586 1907 aa14.83□□□□□ -0.04
USH1C-208ENST00000529563 FLT1P17948 1338 aa14.83□□□□□ -0.04
USH1C-208ENST00000529563 PHIPQ8WWQ0 1821 aa14.82□□□□□ -0.04
USH1C-208ENST00000529563 HMGCRP04035 888 aa14.82□□□□□ -0.04
USH1C-208ENST00000529563 CYP2E1P05181 493 aaPredicted RBP14.82□□□□□ -0.04
USH1C-208ENST00000529563 BACE1P56817 501 aa14.82□□□□□ -0.04
USH1C-208ENST00000529563 PDE3AQ14432 1141 aa14.82□□□□□ -0.04
USH1C-208ENST00000529563 SSH3Q8TE77 659 aa14.82□□□□□ -0.04
USH1C-208ENST00000529563 FEZ1Q99689 392 aa14.82□□□□□ -0.04
USH1C-208ENST00000529563 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.82□□□□□ -0.04
USH1C-208ENST00000529563 CCDC8Q9H0W5 538 aaPredicted RBP14.82□□□□□ -0.04
USH1C-208ENST00000529563 ATAD5Q96QE3 1844 aa14.82□□□□□ -0.04
USH1C-208ENST00000529563 C19orf81C9J6K1 198 aa14.81□□□□□ -0.04
USH1C-208ENST00000529563 USP17L10C9JJH3 530 aa14.81□□□□□ -0.04
USH1C-208ENST00000529563 PPP4CP60510 307 aa14.81□□□□□ -0.04
USH1C-208ENST00000529563 RRP1BQ14684 758 aaKnown RBP14.81□□□□□ -0.04
USH1C-208ENST00000529563 SH3D19Q5HYK7 790 aa14.81□□□□□ -0.04
USH1C-208ENST00000529563 GPRC5AQ8NFJ5 357 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms