RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-229	ENST00000528672	GSX1	Q9H4S2	264 aa	Predicted RBP	4.91	□□□□□ -1.62
CD44-229	ENST00000528672	BRMS1	Q9HCU9	246 aa		4.91	□□□□□ -1.62
CD44-229	ENST00000528672	EFR3B	Q9Y2G0	817 aa		4.91	□□□□□ -1.62
CD44-229	ENST00000528672	INPP5F	Q9Y2H2	1132 aa		4.91	□□□□□ -1.62
CD44-229	ENST00000528672	SAMM50	Q9Y512	469 aa		4.91	□□□□□ -1.62
CD44-229	ENST00000528672	PCDHGC5	Q9Y5F6	944 aa		4.91	□□□□□ -1.62
CD44-229	ENST00000528672	FAM86C2P	A6NEL3	165 aa		4.9	□□□□□ -1.63
CD44-229	ENST00000528672	CDK11B	P21127	795 aa	Known RBP	4.9	□□□□□ -1.63
CD44-229	ENST00000528672	LMNB2	Q03252	620 aa		4.9	□□□□□ -1.63
CD44-229	ENST00000528672	RUFY4	Q6ZNE9	571 aa		4.9	□□□□□ -1.63
CD44-229	ENST00000528672	DPH6	Q7L8W6	267 aa		4.9	□□□□□ -1.63
CD44-229	ENST00000528672	MCF2L2	Q86YR7	1114 aa		4.9	□□□□□ -1.63
CD44-229	ENST00000528672	ZNF654	Q8IZM8	581 aa		4.9	□□□□□ -1.63
CD44-229	ENST00000528672	FAM83C	Q9BQN1	747 aa		4.9	□□□□□ -1.63
CD44-229	ENST00000528672	CACNA2D2	Q9NY47	1150 aa		4.9	□□□□□ -1.63
CD44-229	ENST00000528672	STOML1	Q9UBI4	398 aa		4.9	□□□□□ -1.63
CD44-229	ENST00000528672	RNF112	Q9ULX5	631 aa		4.9	□□□□□ -1.63
CD44-229	ENST00000528672	PCDHA4	Q9UN74	947 aa		4.9	□□□□□ -1.63
CD44-229	ENST00000528672	CDK11A	Q9UQ88	783 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-229	ENST00000528672	COL17A1	Q9UMD9	1497 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-229	ENST00000528672	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-229	ENST00000528672	UPK3BL1	B0FP48	263 aa		4.89	□□□□□ -1.63
CD44-229	ENST00000528672	UPK3BL2	E5RIL1	263 aa		4.89	□□□□□ -1.63
CD44-229	ENST00000528672	DYNC1LI2	O43237	492 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-229	ENST00000528672	GAS2	O43903	313 aa	Known RBP	4.89	□□□□□ -1.63
CD44-229	ENST00000528672	EIF5B	O60841	1220 aa	Known RBP	4.89	□□□□□ -1.63
CD44-229	ENST00000528672	AOC2	O75106	756 aa		4.89	□□□□□ -1.63
CD44-229	ENST00000528672	NEFM	P07197	916 aa		4.89	□□□□□ -1.63
CD44-229	ENST00000528672	ADH5	P11766	374 aa		4.89	□□□□□ -1.63
CD44-229	ENST00000528672	FST	P19883	344 aa		4.89	□□□□□ -1.63
CD44-229	ENST00000528672	GTF2F1	P35269	517 aa	Known RBP eCLIP	4.89	□□□□□ -1.63
CD44-229	ENST00000528672	NASP	P49321	788 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-229	ENST00000528672	SOX4	Q06945	474 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-229	ENST00000528672	KIF4B	Q2VIQ3	1234 aa		4.89	□□□□□ -1.63
CD44-229	ENST00000528672	KIAA0825	Q8IV33	1275 aa		4.89	□□□□□ -1.63
CD44-229	ENST00000528672	FAM169B	Q8N8A8	192 aa		4.89	□□□□□ -1.63
CD44-229	ENST00000528672	EZH1	Q92800	747 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-229	ENST00000528672	DNAJC2	Q99543	621 aa	Known RBP	4.89	□□□□□ -1.63
CD44-229	ENST00000528672	DPH2	Q9BQC3	489 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-229	ENST00000528672	DBNDD2	Q9BQY9	259 aa		4.89	□□□□□ -1.63
CD44-229	ENST00000528672	FBRS	Q9HAH7	460 aa		4.89	□□□□□ -1.63
CD44-229	ENST00000528672	PRAMEF27	A3QJZ7	478 aa		4.88	□□□□□ -1.63
CD44-229	ENST00000528672	GFRA2	O00451	464 aa		4.88	□□□□□ -1.63
CD44-229	ENST00000528672	TMPRSS2	O15393	492 aa		4.88	□□□□□ -1.63
CD44-229	ENST00000528672	PAX4	O43316	350 aa		4.88	□□□□□ -1.63
CD44-229	ENST00000528672	HCLS1	P14317	486 aa	Predicted RBP	4.88	□□□□□ -1.63
CD44-229	ENST00000528672	NTF4	P34130	210 aa		4.88	□□□□□ -1.63
CD44-229	ENST00000528672	ETFB	P38117	255 aa		4.88	□□□□□ -1.63
CD44-229	ENST00000528672	TXK	P42681	527 aa		4.88	□□□□□ -1.63
CD44-229	ENST00000528672	NKG7	Q16617	165 aa		4.88	□□□□□ -1.63
CD44-229	ENST00000528672	WIPI1	Q5MNZ9	446 aa	Predicted RBP	4.88	□□□□□ -1.63
CD44-229	ENST00000528672	RNF43	Q68DV7	783 aa		4.88	□□□□□ -1.63
CD44-229	ENST00000528672	GK5	Q6ZS86	529 aa		4.88	□□□□□ -1.63
CD44-229	ENST00000528672	FAM196A	Q6ZSG2	479 aa		4.88	□□□□□ -1.63
CD44-229	ENST00000528672	TRIM42	Q8IWZ5	723 aa		4.88	□□□□□ -1.63
CD44-229	ENST00000528672	C2CD4A	Q8NCU7	369 aa	Predicted RBP	4.88	□□□□□ -1.63
CD44-229	ENST00000528672	ACSBG1	Q96GR2	724 aa		4.88	□□□□□ -1.63
CD44-229	ENST00000528672	CADPS	Q9ULU8	1353 aa		4.88	□□□□□ -1.63
CD44-229	ENST00000528672	COBL	O75128	1261 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	CILP	O75339	1184 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	IGLV1-40	P01703	118 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	SLFN14	P0C7P3	912 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	BMP3	P12645	472 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	ATF4	P18848	351 aa	Predicted RBP	4.87	□□□□□ -1.63
CD44-229	ENST00000528672	MCM4	P33991	863 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	GJA8	P48165	433 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	ARID5A	Q03989	594 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	NFIA	Q12857	509 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	LRRC14	Q15048	493 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	VPS37D	Q86XT2	251 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	C12orf50	Q8NA57	414 aa	Predicted RBP	4.87	□□□□□ -1.63
CD44-229	ENST00000528672	GATAD2B	Q8WXI9	593 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	ARMC5	Q96C12	935 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	GPRASP2	Q96D09	838 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	FMNL2	Q96PY5	1086 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	GML	Q99445	158 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	MIR1-1HG	Q9H1L0	117 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	C7orf69	Q9H7B7	122 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	KCNQ5	Q9NR82	932 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	DISC1	Q9NRI5	854 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	FAM105A	Q9NUU6	356 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	CNTNAP4	Q9C0A0	1308 aa		4.87	□□□□□ -1.63
CD44-229	ENST00000528672	TRIM37	O94972	964 aa		4.86	□□□□□ -1.63
CD44-229	ENST00000528672	FGR	P09769	529 aa		4.86	□□□□□ -1.63
CD44-229	ENST00000528672	RLBP1	P12271	317 aa		4.86	□□□□□ -1.63
CD44-229	ENST00000528672	POLR2B	P30876	1174 aa	Known RBP	4.86	□□□□□ -1.63
CD44-229	ENST00000528672	RPS26	P62854	115 aa	Known RBP	4.86	□□□□□ -1.63
CD44-229	ENST00000528672	APOBR	Q0VD83	1088 aa		4.86	□□□□□ -1.63
CD44-229	ENST00000528672	MAP7	Q14244	749 aa		4.86	□□□□□ -1.63
CD44-229	ENST00000528672	TTLL4	Q14679	1199 aa		4.86	□□□□□ -1.63
CD44-229	ENST00000528672	SGO2	Q562F6	1265 aa		4.86	□□□□□ -1.63
CD44-229	ENST00000528672	CDPF1	Q6NVV7	123 aa		4.86	□□□□□ -1.63
CD44-229	ENST00000528672	GIMAP6	Q6P9H5	292 aa		4.86	□□□□□ -1.63
CD44-229	ENST00000528672	BEND4	Q6ZU67	534 aa		4.86	□□□□□ -1.63
CD44-229	ENST00000528672	NOP9	Q86U38	636 aa	Known RBP	4.86	□□□□□ -1.63
CD44-229	ENST00000528672	GIMAP7	Q8NHV1	300 aa		4.86	□□□□□ -1.63
CD44-229	ENST00000528672	NKD1	Q969G9	470 aa		4.86	□□□□□ -1.63
CD44-229	ENST00000528672	METTL22	Q9BUU2	404 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-229	ENST00000528672	KRTAP4-7	Q9BYR0	210 aa		4.86	□□□□□ -1.63
CD44-229	ENST00000528672	LNPK	Q9C0E8	428 aa		4.86	□□□□□ -1.63

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