RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 SGPL1O95470 568 aa29.08■■■□□ 2.25
CPSF1-202ENST00000527827 TRIM27P14373 513 aa29.08■■■□□ 2.25
CPSF1-202ENST00000527827 GORABQ5T7V8 394 aa29.08■■■□□ 2.25
CPSF1-202ENST00000527827 ANKRD13CQ8N6S4 541 aa29.08■■■□□ 2.25
CPSF1-202ENST00000527827 HTATIP2Q9BUP3 242 aa29.08■■■□□ 2.25
CPSF1-202ENST00000527827 INHAP05111 366 aa29.07■■■□□ 2.24
CPSF1-202ENST00000527827 MCAMP43121 646 aa29.07■■■□□ 2.24
CPSF1-202ENST00000527827 SPP2Q13103 211 aa29.07■■■□□ 2.24
CPSF1-202ENST00000527827 RRP1BQ14684 758 aaKnown RBP29.07■■■□□ 2.24
CPSF1-202ENST00000527827 PROCA1Q8NCQ7 364 aaPredicted RBP29.07■■■□□ 2.24
CPSF1-202ENST00000527827 RAI14Q9P0K7 980 aa29.07■■■□□ 2.24
CPSF1-202ENST00000527827 FARP2O94887 1054 aaPredicted RBP29.06■■■□□ 2.24
CPSF1-202ENST00000527827 GNAI2P04899 355 aa29.06■■■□□ 2.24
CPSF1-202ENST00000527827 SIPA1L1O43166 1804 aa29.06■■■□□ 2.24
CPSF1-202ENST00000527827 FAM110CQ1W6H9 321 aa29.05■■■□□ 2.24
CPSF1-202ENST00000527827 ZNF280CQ8ND82 737 aa29.05■■■□□ 2.24
CPSF1-202ENST00000527827 RBM27Q9P2N5 1060 aaKnown RBP29.05■■■□□ 2.24
CPSF1-202ENST00000527827 PNMA3Q9UL41 463 aa29.05■■■□□ 2.24
CPSF1-202ENST00000527827 IPO8O15397 1037 aaKnown RBP29.04■■■□□ 2.24
CPSF1-202ENST00000527827 CAP2P40123 477 aa29.04■■■□□ 2.24
CPSF1-202ENST00000527827 G3BP1Q13283 466 aaKnown RBP eCLIP29.04■■■□□ 2.24
CPSF1-202ENST00000527827 ATF7IPQ6VMQ6 1270 aa29.04■■■□□ 2.24
CPSF1-202ENST00000527827 COA7Q96BR5 231 aa29.04■■■□□ 2.24
CPSF1-202ENST00000527827 RANBP2P49792 3224 aaKnown RBP29.03■■■□□ 2.24
CPSF1-202ENST00000527827 TEX11Q8IYF3 940 aa29.03■■■□□ 2.24
CPSF1-202ENST00000527827 TBC1D2Q9BYX2 928 aa29.03■■■□□ 2.24
CPSF1-202ENST00000527827 LRP2BPQ9P2M1 347 aa29.03■■■□□ 2.24
CPSF1-202ENST00000527827 CDK5RAP2Q96SN8 1893 aa29.02■■■□□ 2.24
CPSF1-202ENST00000527827 BCAR3O75815 825 aa29.02■■■□□ 2.24
CPSF1-202ENST00000527827 UQCRFS1P1P0C7P4 283 aa29.02■■■□□ 2.24
CPSF1-202ENST00000527827 HMGCS2P54868 508 aa29.02■■■□□ 2.24
CPSF1-202ENST00000527827 SH3RF3Q8TEJ3 882 aaPredicted RBP29.02■■■□□ 2.24
CPSF1-202ENST00000527827 PRO3102Q9H379 93 aa29.02■■■□□ 2.24
CPSF1-202ENST00000527827 PAK6Q9NQU5 681 aaPredicted RBP29.02■■■□□ 2.24
CPSF1-202ENST00000527827 MAST2Q6P0Q8 1798 aa29.01■■■□□ 2.23
CPSF1-202ENST00000527827 USP17L5A8MUK1 530 aa29.01■■■□□ 2.23
CPSF1-202ENST00000527827 FRAT1Q92837 279 aaPredicted RBP29.01■■■□□ 2.23
CPSF1-202ENST00000527827 CLUAP1Q96AJ1 413 aa29.01■■■□□ 2.23
CPSF1-202ENST00000527827 DEFB118Q96PH6 123 aa29.01■■■□□ 2.23
CPSF1-202ENST00000527827 HERC5Q9UII4 1024 aaKnown RBP29.01■■■□□ 2.23
CPSF1-202ENST00000527827 TAOK2Q9UL54 1235 aa29.01■■■□□ 2.23
CPSF1-202ENST00000527827 SZT2Q5T011 3432 aa29■■■□□ 2.23
CPSF1-202ENST00000527827 MYO5AQ9Y4I1 1855 aaKnown RBP29■■■□□ 2.23
CPSF1-202ENST00000527827 CCER2I3L3R5 266 aa29■■■□□ 2.23
CPSF1-202ENST00000527827 GCLCP48506 637 aaPredicted RBP29■■■□□ 2.23
CPSF1-202ENST00000527827 SH3D19Q5HYK7 790 aa29■■■□□ 2.23
CPSF1-202ENST00000527827 NR2E3Q9Y5X4 410 aa29■■■□□ 2.23
CPSF1-202ENST00000527827 ZBTB7BO15156 539 aaPredicted RBP28.99■■■□□ 2.23
CPSF1-202ENST00000527827 TFRCP02786 760 aaKnown RBP28.99■■■□□ 2.23
CPSF1-202ENST00000527827 CAPN2P17655 700 aa28.99■■■□□ 2.23
CPSF1-202ENST00000527827 CRISPLD2Q9H0B8 497 aa28.99■■■□□ 2.23
CPSF1-202ENST00000527827 ASCC2Q9H1I8 757 aaPredicted RBP28.99■■■□□ 2.23
CPSF1-202ENST00000527827 SNRKQ9NRH2 765 aa28.99■■■□□ 2.23
CPSF1-202ENST00000527827 FOCADQ5VW36 1801 aa28.99■■■□□ 2.23
CPSF1-202ENST00000527827 PABPC4Q13310 644 aaKnown RBP eCLIP28.98■■■□□ 2.23
CPSF1-202ENST00000527827 AATFQ9NY61 560 aaKnown RBP eCLIP28.98■■■□□ 2.23
CPSF1-202ENST00000527827 PI4KBQ9UBF8 816 aa28.98■■■□□ 2.23
CPSF1-202ENST00000527827 ALPK3Q96L96 1907 aa28.98■■■□□ 2.23
CPSF1-202ENST00000527827 PLXNB2O15031 1838 aa28.97■■■□□ 2.23
CPSF1-202ENST00000527827 POLA2Q14181 598 aa28.97■■■□□ 2.23
CPSF1-202ENST00000527827 NAA16Q6N069 864 aaPredicted RBP28.97■■■□□ 2.23
CPSF1-202ENST00000527827 GPR108Q9NPR9 543 aa28.97■■■□□ 2.23
CPSF1-202ENST00000527827 PPP4CP60510 307 aa28.96■■■□□ 2.23
CPSF1-202ENST00000527827 JAG1P78504 1218 aa28.96■■■□□ 2.23
CPSF1-202ENST00000527827 TNNI3KQ59H18 835 aa28.96■■■□□ 2.23
CPSF1-202ENST00000527827 ADGRA1Q86SQ6 560 aa28.96■■■□□ 2.23
CPSF1-202ENST00000527827 TMEM57Q8N5G2 664 aa28.96■■■□□ 2.23
CPSF1-202ENST00000527827 DBNDD2Q9BQY9 259 aa28.96■■■□□ 2.23
CPSF1-202ENST00000527827 NOL10Q9BSC4 688 aaKnown RBP28.96■■■□□ 2.23
CPSF1-202ENST00000527827 WDR18Q9BV38 432 aa28.96■■■□□ 2.23
CPSF1-202ENST00000527827 DHX36Q9H2U1 1008 aaKnown RBP28.96■■■□□ 2.23
CPSF1-202ENST00000527827 AS3MTQ9HBK9 375 aa28.96■■■□□ 2.23
CPSF1-202ENST00000527827 GJD2Q9UKL4 321 aa28.96■■■□□ 2.23
CPSF1-202ENST00000527827 FPGT-TNNI3KV9GXZ4 949 aa28.96■■■□□ 2.23
CPSF1-202ENST00000527827 BAG3O95817 575 aa28.95■■■□□ 2.22
CPSF1-202ENST00000527827 TTC39AQ5SRH9 613 aa28.95■■■□□ 2.22
CPSF1-202ENST00000527827 XRN2Q9H0D6 950 aaKnown RBP eCLIP28.95■■■□□ 2.224e-7■□□□□ 9.8
CPSF1-202ENST00000527827 DNAJC18Q9H819 358 aa28.95■■■□□ 2.22
CPSF1-202ENST00000527827 CYP2E1P05181 493 aaPredicted RBP28.94■■■□□ 2.22
CPSF1-202ENST00000527827 MAPKAPK5Q8IW41 473 aa28.94■■■□□ 2.22
CPSF1-202ENST00000527827 TGFBRAP1Q8WUH2 860 aa28.94■■■□□ 2.22
CPSF1-202ENST00000527827 MORF4L1Q9UBU8 362 aa28.94■■■□□ 2.22
CPSF1-202ENST00000527827 FLT1P17948 1338 aa28.94■■■□□ 2.22
CPSF1-202ENST00000527827 PLCG2P16885 1265 aa28.93■■■□□ 2.22
CPSF1-202ENST00000527827 BACE1P56817 501 aa28.93■■■□□ 2.22
CPSF1-202ENST00000527827 MTMR2Q13614 643 aa28.93■■■□□ 2.22
CPSF1-202ENST00000527827 METTL16Q86W50 562 aaKnown RBP28.93■■■□□ 2.22
CPSF1-202ENST00000527827 SSH3Q8TE77 659 aa28.93■■■□□ 2.22
CPSF1-202ENST00000527827 PAWRQ96IZ0 340 aaKnown RBP28.93■■■□□ 2.22
CPSF1-202ENST00000527827 EVI5O60447 810 aa28.92■■■□□ 2.22
CPSF1-202ENST00000527827 HMGCRP04035 888 aa28.92■■■□□ 2.22
CPSF1-202ENST00000527827 SHROOM1Q2M3G4 852 aaPredicted RBP28.92■■■□□ 2.22
CPSF1-202ENST00000527827 CCDC158Q5M9N0 1113 aa28.92■■■□□ 2.22
CPSF1-202ENST00000527827 ASNSP08243 561 aa28.91■■■□□ 2.22
CPSF1-202ENST00000527827 ATP8B2P98198 1209 aa28.91■■■□□ 2.22
CPSF1-202ENST00000527827 TRIM32Q13049 653 aa28.91■■■□□ 2.22
CPSF1-202ENST00000527827 FOXP4Q8IVH2 680 aaPredicted RBP28.91■■■□□ 2.22
CPSF1-202ENST00000527827 DIS3LQ8TF46 1054 aaKnown RBP28.91■■■□□ 2.22
CPSF1-202ENST00000527827 HOXA7P31268 230 aaPredicted RBP28.9■■■□□ 2.22
CPSF1-202ENST00000527827 ZNF512BQ96KM6 892 aaPredicted RBP28.9■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms