RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 WDR19Q8NEZ3 1342 aa22.16■■□□□ 1.14
VPS28-207ENST00000526977 NPM3O75607 178 aaKnown RBP22.16■■□□□ 1.14
VPS28-207ENST00000526977 FGRP09769 529 aa22.16■■□□□ 1.14
VPS28-207ENST00000526977 CHST3Q7LGC8 479 aa22.16■■□□□ 1.14
VPS28-207ENST00000526977 FBXL16Q8N461 479 aa22.16■■□□□ 1.14
VPS28-207ENST00000526977 PRMT6Q96LA8 375 aaPredicted RBP22.16■■□□□ 1.14
VPS28-207ENST00000526977 IDI2Q9BXS1 227 aa22.16■■□□□ 1.14
VPS28-207ENST00000526977 CYP2D7A0A087X1C5 515 aa22.15■■□□□ 1.14
VPS28-207ENST00000526977 FSD2A1L4K1 749 aa22.15■■□□□ 1.14
VPS28-207ENST00000526977 F13A1P00488 732 aa22.15■■□□□ 1.14
VPS28-207ENST00000526977 NT5C2P49902 561 aa22.15■■□□□ 1.14
VPS28-207ENST00000526977 LARP1BQ659C4 914 aaKnown RBP22.15■■□□□ 1.14
VPS28-207ENST00000526977 SPDYE2BA6NHP3 402 aa22.14■■□□□ 1.14
VPS28-207ENST00000526977 PFKFB2O60825 505 aa22.14■■□□□ 1.14
VPS28-207ENST00000526977 SPDYE6P0CI01 402 aa22.14■■□□□ 1.14
VPS28-207ENST00000526977 PDE4BQ07343 736 aa22.14■■□□□ 1.14
VPS28-207ENST00000526977 APOBRQ0VD83 1088 aa22.14■■□□□ 1.14
VPS28-207ENST00000526977 GPR162Q16538 588 aa22.14■■□□□ 1.14
VPS28-207ENST00000526977 PCDHAC2Q9Y5I4 1007 aa22.14■■□□□ 1.14
VPS28-207ENST00000526977 PDIA4P13667 645 aaKnown RBP22.14■■□□□ 1.13
VPS28-207ENST00000526977 GPT2Q8TD30 523 aa22.14■■□□□ 1.13
VPS28-207ENST00000526977 GJA3Q9Y6H8 435 aa22.14■■□□□ 1.13
VPS28-207ENST00000526977 BAZ2AQ9UIF9 1905 aaKnown RBP22.14■■□□□ 1.13
VPS28-207ENST00000526977 TIAM2Q8IVF5 1701 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 NEDD4P46934 1319 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 B4E1Z4 1266 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 GRIN3BO60391 1043 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 ZNF280AP59817 542 aaPredicted RBP22.13■■□□□ 1.13
VPS28-207ENST00000526977 SCRN1Q12765 414 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 PICALMQ13492 652 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 TTC6Q86TZ1 520 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 TDRD3Q9H7E2 651 aaKnown RBP22.13■■□□□ 1.13
VPS28-207ENST00000526977 INCENPQ9NQS7 918 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 TOMM22Q9NS69 142 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 SAP30BPQ9UHR5 308 aaKnown RBP22.13■■□□□ 1.13
VPS28-207ENST00000526977 CYP2D6P10635 497 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 NCLP19338 710 aaKnown RBP22.13■■□□□ 1.13
VPS28-207ENST00000526977 PDCP20941 246 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 GPC2Q8N158 579 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 ESR2Q92731 530 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 ZNF287Q9HBT7 754 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 DDX4Q9NQI0 724 aaKnown RBP22.13■■□□□ 1.13
VPS28-207ENST00000526977 TMOD2Q9NZR1 351 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 TACC3Q9Y6A5 838 aa22.13■■□□□ 1.13
VPS28-207ENST00000526977 ZNF541Q9H0D2 1346 aa22.12■■□□□ 1.13
VPS28-207ENST00000526977 GOLGA6L3A6NEY3 463 aa22.12■■□□□ 1.13
VPS28-207ENST00000526977 PRC1O43663 620 aa22.12■■□□□ 1.13
VPS28-207ENST00000526977 ORC4O43929 436 aa22.12■■□□□ 1.13
VPS28-207ENST00000526977 GMPSP49915 693 aaPredicted RBP22.12■■□□□ 1.13
VPS28-207ENST00000526977 MTA3Q9BTC8 594 aa22.12■■□□□ 1.13
VPS28-207ENST00000526977 OSBPL5Q9H0X9 879 aaPredicted RBP22.12■■□□□ 1.13
VPS28-207ENST00000526977 MYOZ2Q9NPC6 264 aa22.12■■□□□ 1.13
VPS28-207ENST00000526977 RNF181Q9P0P0 153 aa22.12■■□□□ 1.13
VPS28-207ENST00000526977 ZSWIM5Q9P217 1185 aa22.12■■□□□ 1.13
VPS28-207ENST00000526977 ROBO3Q96MS0 1386 aa22.12■■□□□ 1.13
VPS28-207ENST00000526977 JAK2O60674 1132 aa22.11■■□□□ 1.13
VPS28-207ENST00000526977 KDM4AO75164 1064 aa22.11■■□□□ 1.13
VPS28-207ENST00000526977 PLCD1P51178 756 aa22.11■■□□□ 1.13
VPS28-207ENST00000526977 STK11IPQ8N1F8 1099 aa22.11■■□□□ 1.13
VPS28-207ENST00000526977 ZNF274Q96GC6 653 aaPredicted RBP22.11■■□□□ 1.13
VPS28-207ENST00000526977 DHX36Q9H2U1 1008 aaKnown RBP22.11■■□□□ 1.13
VPS28-207ENST00000526977 ATP6V1DQ9Y5K8 247 aa22.11■■□□□ 1.13
VPS28-207ENST00000526977 DICER1Q9UPY3 1922 aaKnown RBP22.11■■□□□ 1.13
VPS28-207ENST00000526977 ADAMTSL1Q8N6G6 1762 aa22.11■■□□□ 1.13
VPS28-207ENST00000526977 VPS37CA5D8V6 355 aaPredicted RBP22.11■■□□□ 1.13
VPS28-207ENST00000526977 MYO1BO43795 1136 aa22.11■■□□□ 1.13
VPS28-207ENST00000526977 EVCP57679 992 aa22.11■■□□□ 1.13
VPS28-207ENST00000526977 NFIAQ12857 509 aa22.11■■□□□ 1.13
VPS28-207ENST00000526977 RRP12Q5JTH9 1297 aaKnown RBP22.11■■□□□ 1.13
VPS28-207ENST00000526977 TMEM87BQ96K49 555 aa22.11■■□□□ 1.13
VPS28-207ENST00000526977 GPHNQ9NQX3 736 aaPredicted RBP22.11■■□□□ 1.13
VPS28-207ENST00000526977 CNOT7Q9UIV1 285 aaKnown RBP22.11■■□□□ 1.13
VPS28-207ENST00000526977 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.11■■□□□ 1.131e-7■■■■□ 24.2
VPS28-207ENST00000526977 SBF1O95248 1867 aa22.1■■□□□ 1.13
VPS28-207ENST00000526977 CDK5RAP2Q96SN8 1893 aa22.1■■□□□ 1.13
VPS28-207ENST00000526977 SMIM22K7EJ46 135 aa22.1■■□□□ 1.13
VPS28-207ENST00000526977 PDIA3P30101 505 aaKnown RBP22.1■■□□□ 1.13
VPS28-207ENST00000526977 ANTXR2P58335 489 aa22.1■■□□□ 1.13
VPS28-207ENST00000526977 USP48Q86UV5 1035 aa22.1■■□□□ 1.13
VPS28-207ENST00000526977 ZBED3Q96IU2 234 aaPredicted RBP22.1■■□□□ 1.13
VPS28-207ENST00000526977 LLPHQ9BRT6 129 aaKnown RBP22.1■■□□□ 1.13
VPS28-207ENST00000526977 GDPD2Q9HCC8 539 aa22.1■■□□□ 1.13
VPS28-207ENST00000526977 FOCADQ5VW36 1801 aa22.1■■□□□ 1.13
VPS28-207ENST00000526977 ENTPD3O75355 529 aa22.09■■□□□ 1.13
VPS28-207ENST00000526977 L1TD1Q5T7N2 865 aaKnown RBP22.09■■□□□ 1.13
VPS28-207ENST00000526977 CYB5R4Q7L1T6 521 aa22.09■■□□□ 1.13
VPS28-207ENST00000526977 NAV1Q8NEY1 1877 aa22.09■■□□□ 1.13
VPS28-207ENST00000526977 UTRNP46939 3433 aa22.09■■□□□ 1.13
VPS28-207ENST00000526977 SART3Q15020 963 aaKnown RBP22.09■■□□□ 1.13
VPS28-207ENST00000526977 FKBP1CQ5VVH2 108 aa22.09■■□□□ 1.13
VPS28-207ENST00000526977 C9orf131Q5VYM1 1079 aa22.09■■□□□ 1.13
VPS28-207ENST00000526977 CAVIN1Q6NZI2 390 aaKnown RBP22.09■■□□□ 1.13
VPS28-207ENST00000526977 MICALL2Q8IY33 904 aa22.09■■□□□ 1.13
VPS28-207ENST00000526977 SMARCC2Q8TAQ2 1214 aa22.09■■□□□ 1.13
VPS28-207ENST00000526977 ZNF70Q9UC06 446 aaPredicted RBP22.09■■□□□ 1.13
VPS28-207ENST00000526977 FAM198AQ9UFP1 575 aa22.09■■□□□ 1.13
VPS28-207ENST00000526977 CNPY2Q9Y2B0 182 aa22.09■■□□□ 1.13
VPS28-207ENST00000526977 HLA-DOAP06340 250 aa22.08■■□□□ 1.13
VPS28-207ENST00000526977 EVX2Q03828 476 aa22.08■■□□□ 1.13
VPS28-207ENST00000526977 SLC4A8Q2Y0W8 1093 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms