RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 SOX1O00570 391 aaPredicted RBP17.7■□□□□ 0.42
CPSF1-201ENST00000526271 SRGAP3O43295 1099 aa17.7■□□□□ 0.42
CPSF1-201ENST00000526271 FARP2O94887 1054 aaPredicted RBP17.7■□□□□ 0.42
CPSF1-201ENST00000526271 TRIM32Q13049 653 aa17.7■□□□□ 0.42
CPSF1-201ENST00000526271 ADGRA1Q86SQ6 560 aa17.7■□□□□ 0.42
CPSF1-201ENST00000526271 ZSCAN29Q8IWY8 852 aaPredicted RBP17.7■□□□□ 0.42
CPSF1-201ENST00000526271 ZGPATQ8N5A5 531 aaKnown RBP17.7■□□□□ 0.42
CPSF1-201ENST00000526271 DIS3LQ8TF46 1054 aaKnown RBP17.7■□□□□ 0.42
CPSF1-201ENST00000526271 CRISPLD2Q9H0B8 497 aa17.7■□□□□ 0.42
CPSF1-201ENST00000526271 GJD2Q9UKL4 321 aa17.7■□□□□ 0.42
CPSF1-201ENST00000526271 CT47B1P0C2W7 299 aaPredicted RBP17.69■□□□□ 0.42
CPSF1-201ENST00000526271 ARID4AP29374 1257 aaPredicted RBP17.69■□□□□ 0.42
CPSF1-201ENST00000526271 SPP2Q13103 211 aa17.69■□□□□ 0.42
CPSF1-201ENST00000526271 ERICH6Q7L0X2 663 aa17.69■□□□□ 0.42
CPSF1-201ENST00000526271 NKX2-3Q8TAU0 364 aa17.69■□□□□ 0.42
CPSF1-201ENST00000526271 PXYLP1Q8TE99 480 aa17.69■□□□□ 0.42
CPSF1-201ENST00000526271 DEFB118Q96PH6 123 aa17.69■□□□□ 0.42
CPSF1-201ENST00000526271 OSBPL5Q9H0X9 879 aaPredicted RBP17.69■□□□□ 0.42
CPSF1-201ENST00000526271 TNPO2O14787 897 aaKnown RBP17.68■□□□□ 0.42
CPSF1-201ENST00000526271 TRIM27P14373 513 aa17.68■□□□□ 0.42
CPSF1-201ENST00000526271 DDX60LQ5H9U9 1706 aaKnown RBP17.68■□□□□ 0.42
CPSF1-201ENST00000526271 DIEXFQ68CQ4 756 aaKnown RBP17.68■□□□□ 0.42
CPSF1-201ENST00000526271 SPATA5Q8NB90 893 aa17.68■□□□□ 0.42
CPSF1-201ENST00000526271 BIN2Q9UBW5 565 aaPredicted RBP17.68■□□□□ 0.42
CPSF1-201ENST00000526271 CAP2P40123 477 aa17.67■□□□□ 0.42
CPSF1-201ENST00000526271 HMGCS2P54868 508 aa17.67■□□□□ 0.42
CPSF1-201ENST00000526271 UBXN2AP68543 259 aa17.67■□□□□ 0.42
CPSF1-201ENST00000526271 FAM110CQ1W6H9 321 aa17.67■□□□□ 0.42
CPSF1-201ENST00000526271 SH3RF3Q8TEJ3 882 aaPredicted RBP17.67■□□□□ 0.42
CPSF1-201ENST00000526271 ARHGAP45Q92619 1136 aa17.67■□□□□ 0.42
CPSF1-201ENST00000526271 MVPQ14764 893 aaKnown RBP17.66■□□□□ 0.42
CPSF1-201ENST00000526271 SH3D19Q5HYK7 790 aa17.66■□□□□ 0.42
CPSF1-201ENST00000526271 NEUROD6Q96NK8 337 aa17.66■□□□□ 0.42
CPSF1-201ENST00000526271 ASCC2Q9H1I8 757 aaPredicted RBP17.66■□□□□ 0.42
CPSF1-201ENST00000526271 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.66■□□□□ 0.42
CPSF1-201ENST00000526271 A0A0C4DFX4 3053 aa17.66■□□□□ 0.42
CPSF1-201ENST00000526271 BCAR3O75815 825 aa17.65■□□□□ 0.42
CPSF1-201ENST00000526271 SPTY2D1Q68D10 685 aaPredicted RBP17.65■□□□□ 0.42
CPSF1-201ENST00000526271 PROCA1Q8NCQ7 364 aaPredicted RBP17.65■□□□□ 0.42
CPSF1-201ENST00000526271 ZNF280CQ8ND82 737 aa17.65■□□□□ 0.42
CPSF1-201ENST00000526271 SMCR8Q8TEV9 937 aaPredicted RBP17.65■□□□□ 0.42
CPSF1-201ENST00000526271 PAWRQ96IZ0 340 aaKnown RBP17.65■□□□□ 0.42
CPSF1-201ENST00000526271 TXNRD2Q9NNW7 524 aa17.65■□□□□ 0.42
CPSF1-201ENST00000526271 METTL16Q86W50 562 aaKnown RBP17.64■□□□□ 0.41
CPSF1-201ENST00000526271 SNRKQ9NRH2 765 aa17.64■□□□□ 0.41
CPSF1-201ENST00000526271 AKAP2Q9Y2D5 859 aa17.64■□□□□ 0.41
CPSF1-201ENST00000526271 GNAI3P08754 354 aa17.63■□□□□ 0.41
CPSF1-201ENST00000526271 POLA2Q14181 598 aa17.63■□□□□ 0.41
CPSF1-201ENST00000526271 SLF2Q8IX21 1173 aa17.63■□□□□ 0.41
CPSF1-201ENST00000526271 TRIB2Q92519 343 aa17.63■□□□□ 0.41
CPSF1-201ENST00000526271 LRCH3Q96II8 777 aa17.63■□□□□ 0.41
CPSF1-201ENST00000526271 DBNDD2Q9BQY9 259 aa17.63■□□□□ 0.41
CPSF1-201ENST00000526271 HTATIP2Q9BUP3 242 aa17.63■□□□□ 0.41
CPSF1-201ENST00000526271 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.63■□□□□ 0.41
CPSF1-201ENST00000526271 FRMPD3Q5JV73 1810 aa17.63■□□□□ 0.41
CPSF1-201ENST00000526271 DNAH12Q6ZR08 3092 aa17.63■□□□□ 0.41
CPSF1-201ENST00000526271 CYP2E1P05181 493 aaPredicted RBP17.62■□□□□ 0.41
CPSF1-201ENST00000526271 TEX11Q8IYF3 940 aa17.62■□□□□ 0.41
CPSF1-201ENST00000526271 AATFQ9NY61 560 aaKnown RBP eCLIP17.62■□□□□ 0.41
CPSF1-201ENST00000526271 RAI14Q9P0K7 980 aa17.62■□□□□ 0.41
CPSF1-201ENST00000526271 MORF4L1Q9UBU8 362 aa17.62■□□□□ 0.41
CPSF1-201ENST00000526271 STAP2Q9UGK3 403 aa17.62■□□□□ 0.41
CPSF1-201ENST00000526271 MYH1P12882 1939 aa17.62■□□□□ 0.41
CPSF1-201ENST00000526271 TFRCP02786 760 aaKnown RBP17.61■□□□□ 0.41
CPSF1-201ENST00000526271 Q3C1V9 767 aa17.61■□□□□ 0.41
CPSF1-201ENST00000526271 CLUAP1Q96AJ1 413 aa17.61■□□□□ 0.41
CPSF1-201ENST00000526271 P2RX7Q99572 595 aaKnown RBP17.61■□□□□ 0.41
CPSF1-201ENST00000526271 WDR18Q9BV38 432 aa17.61■□□□□ 0.41
CPSF1-201ENST00000526271 PIH1D3Q9NQM4 214 aaKnown RBP17.61■□□□□ 0.41
CPSF1-201ENST00000526271 TLR7Q9NYK1 1049 aaKnown RBP17.61■□□□□ 0.41
CPSF1-201ENST00000526271 TAOK2Q9UL54 1235 aa17.61■□□□□ 0.41
CPSF1-201ENST00000526271 CUL9Q8IWT3 2517 aa17.61■□□□□ 0.41
CPSF1-201ENST00000526271 LAMA2P24043 3122 aaKnown RBP17.61■□□□□ 0.41
CPSF1-201ENST00000526271 USP17L5A8MUK1 530 aa17.6■□□□□ 0.41
CPSF1-201ENST00000526271 MAP4K4O95819 1239 aaPredicted RBP17.6■□□□□ 0.41
CPSF1-201ENST00000526271 PPP4CP60510 307 aa17.6■□□□□ 0.41
CPSF1-201ENST00000526271 MTMR2Q13614 643 aa17.6■□□□□ 0.41
CPSF1-201ENST00000526271 MAP3K21Q5TCX8 1036 aa17.6■□□□□ 0.41
CPSF1-201ENST00000526271 ATF7IPQ6VMQ6 1270 aa17.6■□□□□ 0.41
CPSF1-201ENST00000526271 MAPKAPK5Q8IW41 473 aa17.6■□□□□ 0.41
CPSF1-201ENST00000526271 TMEM57Q8N5G2 664 aa17.6■□□□□ 0.41
CPSF1-201ENST00000526271 COA7Q96BR5 231 aa17.6■□□□□ 0.41
CPSF1-201ENST00000526271 GDF15Q99988 308 aa17.6■□□□□ 0.41
CPSF1-201ENST00000526271 FLT1P17948 1338 aa17.6■□□□□ 0.41
CPSF1-201ENST00000526271 PFASO15067 1338 aa17.59■□□□□ 0.41
CPSF1-201ENST00000526271 HMGCRP04035 888 aa17.59■□□□□ 0.41
CPSF1-201ENST00000526271 GNAI2P04899 355 aa17.59■□□□□ 0.41
CPSF1-201ENST00000526271 LDHCP07864 332 aa17.59■□□□□ 0.41
CPSF1-201ENST00000526271 GCLCP48506 637 aaPredicted RBP17.59■□□□□ 0.41
CPSF1-201ENST00000526271 DYNLL1P63167 89 aaKnown RBP17.59■□□□□ 0.41
CPSF1-201ENST00000526271 GSTO1P78417 241 aa17.59■□□□□ 0.41
CPSF1-201ENST00000526271 TNNI3KQ59H18 835 aa17.59■□□□□ 0.41
CPSF1-201ENST00000526271 TGFBRAP1Q8WUH2 860 aa17.59■□□□□ 0.41
CPSF1-201ENST00000526271 USP6NLQ92738 828 aa17.59■□□□□ 0.41
CPSF1-201ENST00000526271 RBPJLQ9UBG7 517 aa17.59■□□□□ 0.41
CPSF1-201ENST00000526271 HERC5Q9UII4 1024 aaKnown RBP17.59■□□□□ 0.41
CPSF1-201ENST00000526271 PNMA3Q9UL41 463 aa17.59■□□□□ 0.41
CPSF1-201ENST00000526271 PALD1Q9ULE6 856 aa17.59■□□□□ 0.41
CPSF1-201ENST00000526271 HDAC5Q9UQL6 1122 aa17.59■□□□□ 0.41
CPSF1-201ENST00000526271 FPGT-TNNI3KV9GXZ4 949 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms