RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 TRAPPC3LQ5T215 181 aa4.91□□□□□ -1.62
CPNE3-204ENST00000517862 TBC1D9Q6ZT07 1266 aa4.91□□□□□ -1.62
CPNE3-204ENST00000517862 CHSY3Q70JA7 882 aa4.91□□□□□ -1.62
CPNE3-204ENST00000517862 NLRP13Q86W25 1043 aa4.91□□□□□ -1.62
CPNE3-204ENST00000517862 C1QTNF2Q9BXJ5 285 aa4.91□□□□□ -1.62
CPNE3-204ENST00000517862 GBA2Q9HCG7 927 aaPredicted RBP4.91□□□□□ -1.62
CPNE3-204ENST00000517862 MAFBQ9Y5Q3 323 aaPredicted RBP4.91□□□□□ -1.62
CPNE3-204ENST00000517862 GJA3Q9Y6H8 435 aa4.91□□□□□ -1.62
CPNE3-204ENST00000517862 OAS3Q9Y6K5 1087 aaKnown RBP4.91□□□□□ -1.62
CPNE3-204ENST00000517862 DOPEY1Q5JWR5 2465 aa4.9□□□□□ -1.62
CPNE3-204ENST00000517862 ALPK3Q96L96 1907 aa4.9□□□□□ -1.62
CPNE3-204ENST00000517862 PIK3CDO00329 1044 aa4.9□□□□□ -1.63
CPNE3-204ENST00000517862 DHX9Q08211 1270 aaKnown RBP4.9□□□□□ -1.63
CPNE3-204ENST00000517862 DDR1Q08345 913 aa4.9□□□□□ -1.63
CPNE3-204ENST00000517862 SAFB2Q14151 953 aaKnown RBP eCLIP4.9□□□□□ -1.63
CPNE3-204ENST00000517862 DESI1Q6ICB0 168 aa4.9□□□□□ -1.63
CPNE3-204ENST00000517862 C2CD5Q86YS7 1000 aa4.9□□□□□ -1.63
CPNE3-204ENST00000517862 RNF135Q8IUD6 432 aa4.9□□□□□ -1.63
CPNE3-204ENST00000517862 TRMT44Q8IYL2 757 aaKnown RBP4.9□□□□□ -1.63
CPNE3-204ENST00000517862 EFCC1Q9HA90 598 aa4.9□□□□□ -1.63
CPNE3-204ENST00000517862 ZFYVE26Q68DK2 2539 aa4.9□□□□□ -1.63
CPNE3-204ENST00000517862 COL15A1P39059 1388 aa4.9□□□□□ -1.63
CPNE3-204ENST00000517862 ABCC11Q96J66 1382 aa4.9□□□□□ -1.63
CPNE3-204ENST00000517862 KRTAP9-7A8MTY7 169 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 PATL2C9JE40 543 aaKnown RBP4.89□□□□□ -1.63
CPNE3-204ENST00000517862 PI4K2BG5E9Z4 385 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 H0YIN7 160 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 FARP2O94887 1054 aaPredicted RBP4.89□□□□□ -1.63
CPNE3-204ENST00000517862 SYN1P17600 705 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 RFC4P35249 363 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 SEMA3FQ13275 785 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 CDC37L1Q7L3B6 337 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 DGLUCYQ7Z3D6 616 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 RASAL3Q86YV0 1011 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 C7orf61Q8IZ16 206 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 LINC00116Q8NCU8 138 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 CD99L2Q8TCZ2 262 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 ERO1AQ96HE7 468 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 HNRNPABQ99729 332 aaKnown RBP4.89□□□□□ -1.63
CPNE3-204ENST00000517862 TTYH1Q9H313 450 aaPredicted RBP4.89□□□□□ -1.63
CPNE3-204ENST00000517862 VRTNQ9H8Y1 702 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 ZNF609O15014 1411 aa4.89□□□□□ -1.63
CPNE3-204ENST00000517862 XIRP2A4UGR9 3374 aa4.88□□□□□ -1.63
CPNE3-204ENST00000517862 COL2A1P02458 1487 aaPredicted RBP4.88□□□□□ -1.63
CPNE3-204ENST00000517862 KIF1BO60333 1816 aa4.88□□□□□ -1.63
CPNE3-204ENST00000517862 ATG7O95352 703 aa4.88□□□□□ -1.63
CPNE3-204ENST00000517862 SCNN1DP51172 638 aa4.88□□□□□ -1.63
CPNE3-204ENST00000517862 GP2P55259 537 aaKnown RBP4.88□□□□□ -1.63
CPNE3-204ENST00000517862 CCDC27Q2M243 656 aa4.88□□□□□ -1.63
CPNE3-204ENST00000517862 OGFOD2Q6N063 350 aa4.88□□□□□ -1.63
CPNE3-204ENST00000517862 LYPD8Q6UX82 237 aa4.88□□□□□ -1.63
CPNE3-204ENST00000517862 SND1Q7KZF4 910 aaKnown RBP eCLIP4.88□□□□□ -1.63
CPNE3-204ENST00000517862 STK32AQ8WU08 396 aa4.88□□□□□ -1.63
CPNE3-204ENST00000517862 NLRP2Q9NX02 1062 aa4.88□□□□□ -1.63
CPNE3-204ENST00000517862 MAP10Q9P2G4 905 aa4.88□□□□□ -1.63
CPNE3-204ENST00000517862 ZMIZ1Q9ULJ6 1067 aa4.88□□□□□ -1.63
CPNE3-204ENST00000517862 RTCBQ9Y3I0 505 aaKnown RBP4.88□□□□□ -1.63
CPNE3-204ENST00000517862 PTCH2Q9Y6C5 1203 aa4.88□□□□□ -1.63
CPNE3-204ENST00000517862 COL4A5P29400 1685 aa4.88□□□□□ -1.63
CPNE3-204ENST00000517862 FZD9O00144 591 aa4.87□□□□□ -1.63
CPNE3-204ENST00000517862 IGSF3O75054 1194 aa4.87□□□□□ -1.63
CPNE3-204ENST00000517862 SSTR4P31391 388 aa4.87□□□□□ -1.63
CPNE3-204ENST00000517862 TM4SF4P48230 202 aa4.87□□□□□ -1.63
CPNE3-204ENST00000517862 DLK2Q6UY11 383 aa4.87□□□□□ -1.63
CPNE3-204ENST00000517862 USP48Q86UV5 1035 aa4.87□□□□□ -1.63
CPNE3-204ENST00000517862 SH3TC2Q8TF17 1288 aa4.87□□□□□ -1.63
CPNE3-204ENST00000517862 ZNF622Q969S3 477 aaKnown RBP eCLIP4.87□□□□□ -1.63
CPNE3-204ENST00000517862 CACNA1SQ13698 1873 aa4.87□□□□□ -1.63
CPNE3-204ENST00000517862 POLR3AO14802 1390 aaPredicted RBP4.87□□□□□ -1.63
CPNE3-204ENST00000517862 TJP1Q07157 1748 aa4.86□□□□□ -1.63
CPNE3-204ENST00000517862 BCORQ6W2J9 1755 aa4.86□□□□□ -1.63
CPNE3-204ENST00000517862 ABCA12Q86UK0 2595 aa4.86□□□□□ -1.63
CPNE3-204ENST00000517862 ATP9BO43861 1147 aa4.86□□□□□ -1.63
CPNE3-204ENST00000517862 FBXO45P0C2W1 286 aa4.86□□□□□ -1.63
CPNE3-204ENST00000517862 GJA8P48165 433 aa4.86□□□□□ -1.63
CPNE3-204ENST00000517862 RNF144AP50876 292 aaPredicted RBP4.86□□□□□ -1.63
CPNE3-204ENST00000517862 TMEM164Q5U3C3 297 aa4.86□□□□□ -1.63
CPNE3-204ENST00000517862 TMEM132EQ6IEE7 984 aa4.86□□□□□ -1.63
CPNE3-204ENST00000517862 DEPDC4Q8N2C3 294 aa4.86□□□□□ -1.63
CPNE3-204ENST00000517862 TP53INP1Q96A56 240 aa4.86□□□□□ -1.63
CPNE3-204ENST00000517862 ZNF277Q9NRM2 450 aaPredicted RBP4.86□□□□□ -1.63
CPNE3-204ENST00000517862 ADARB2Q9NS39 739 aaKnown RBP4.86□□□□□ -1.63
CPNE3-204ENST00000517862 MYO9BQ13459 2157 aa4.86□□□□□ -1.63
CPNE3-204ENST00000517862 ZNF646O15015 1829 aaPredicted RBP4.86□□□□□ -1.63
CPNE3-204ENST00000517862 POLRMTO00411 1230 aaKnown RBP4.85□□□□□ -1.63
CPNE3-204ENST00000517862 SOX11P35716 441 aa4.85□□□□□ -1.63
CPNE3-204ENST00000517862 EIF6P56537 245 aaKnown RBP4.85□□□□□ -1.63
CPNE3-204ENST00000517862 PRKG1Q13976 671 aa4.85□□□□□ -1.63
CPNE3-204ENST00000517862 MTFR1Q15390 333 aa4.85□□□□□ -1.63
CPNE3-204ENST00000517862 TRPM4Q8TD43 1214 aa4.85□□□□□ -1.63
CPNE3-204ENST00000517862 SMARCC1Q92922 1105 aaPredicted RBP4.85□□□□□ -1.63
CPNE3-204ENST00000517862 PGAP2Q9UHJ9 254 aa4.85□□□□□ -1.63
CPNE3-204ENST00000517862 EIF3AQ14152 1382 aaKnown RBP4.85□□□□□ -1.63
CPNE3-204ENST00000517862 CPSF1Q10570 1443 aaKnown RBP4.85□□□□□ -1.63
CPNE3-204ENST00000517862 KDM3BQ7LBC6 1761 aa4.85□□□□□ -1.63
CPNE3-204ENST00000517862 AFDNP55196 1824 aaKnown RBP4.85□□□□□ -1.63
CPNE3-204ENST00000517862 POLR2AP24928 1970 aaKnown RBP4.85□□□□□ -1.63
CPNE3-204ENST00000517862 MYO18BQ8IUG5 2567 aa4.85□□□□□ -1.63
CPNE3-204ENST00000517862 HELZ2Q9BYK8 2649 aaKnown RBP4.85□□□□□ -1.63
CPNE3-204ENST00000517862 SLX4Q8IY92 1834 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms