RNA–Protein interactions for RNA: ENST00000513988.1

CLDND1-229, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-229ENST00000513988 SPEF2Q9C093 1822 aa9.93□□□□□ -0.82
CLDND1-229ENST00000513988 TPRP12270 2363 aaKnown RBP9.93□□□□□ -0.82
CLDND1-229ENST00000513988 A0A0G2JLL6 359 aaPredicted RBP9.93□□□□□ -0.82
CLDND1-229ENST00000513988 GRXCR1A8MXD5 290 aa9.93□□□□□ -0.82
CLDND1-229ENST00000513988 DNM1LO00429 736 aa9.93□□□□□ -0.82
CLDND1-229ENST00000513988 PDE8AO60658 829 aa9.93□□□□□ -0.82
CLDND1-229ENST00000513988 FPGSQ05932 587 aa9.93□□□□□ -0.82
CLDND1-229ENST00000513988 SLC39A5Q6ZMH5 540 aa9.93□□□□□ -0.82
CLDND1-229ENST00000513988 MIGA2Q7L4E1 593 aa9.93□□□□□ -0.82
CLDND1-229ENST00000513988 PRRT2Q7Z6L0 340 aaPredicted RBP9.93□□□□□ -0.82
CLDND1-229ENST00000513988 EFCAB3Q8N7B9 438 aa9.93□□□□□ -0.82
CLDND1-229ENST00000513988 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.93□□□□□ -0.82
CLDND1-229ENST00000513988 MSRAQ9UJ68 235 aa9.93□□□□□ -0.82
CLDND1-229ENST00000513988 JAG2Q9Y219 1238 aa9.93□□□□□ -0.82
CLDND1-229ENST00000513988 TRANK1O15050 2925 aa9.93□□□□□ -0.82
CLDND1-229ENST00000513988 CHD6Q8TD26 2715 aa9.92□□□□□ -0.82
CLDND1-229ENST00000513988 RIOK3O14730 519 aaKnown RBP9.92□□□□□ -0.82
CLDND1-229ENST00000513988 XRCC5P13010 732 aaKnown RBP9.92□□□□□ -0.82
CLDND1-229ENST00000513988 PTPN5P54829 565 aa9.92□□□□□ -0.82
CLDND1-229ENST00000513988 TRIM28Q13263 835 aaKnown RBP9.92□□□□□ -0.82
CLDND1-229ENST00000513988 RAB30Q15771 203 aa9.92□□□□□ -0.82
CLDND1-229ENST00000513988 SLC28A3Q9HAS3 691 aa9.92□□□□□ -0.82
CLDND1-229ENST00000513988 TTF2Q9UNY4 1162 aaKnown RBP9.92□□□□□ -0.82
CLDND1-229ENST00000513988 PRRC2BQ5JSZ5 2229 aaKnown RBP9.92□□□□□ -0.82
CLDND1-229ENST00000513988 RLFQ13129 1914 aa9.92□□□□□ -0.82
CLDND1-229ENST00000513988 PLXNB2O15031 1838 aa9.91□□□□□ -0.82
CLDND1-229ENST00000513988 MYBBP1AQ9BQG0 1328 aaKnown RBP9.91□□□□□ -0.82
CLDND1-229ENST00000513988 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.91□□□□□ -0.82
CLDND1-229ENST00000513988 RAG1P15918 1043 aa9.91□□□□□ -0.82
CLDND1-229ENST00000513988 CACNB3P54284 484 aa9.91□□□□□ -0.82
CLDND1-229ENST00000513988 NOL9Q5SY16 702 aaKnown RBP9.91□□□□□ -0.82
CLDND1-229ENST00000513988 GJD3Q8N144 294 aa9.91□□□□□ -0.82
CLDND1-229ENST00000513988 SOCS4Q8WXH5 440 aa9.91□□□□□ -0.82
CLDND1-229ENST00000513988 HLA-CQ95604 372 aa9.91□□□□□ -0.82
CLDND1-229ENST00000513988 ZFP91Q96JP5 570 aaPredicted RBP9.91□□□□□ -0.82
CLDND1-229ENST00000513988 NUDT12Q9BQG2 462 aa9.91□□□□□ -0.82
CLDND1-229ENST00000513988 ANKRD2Q9GZV1 360 aa9.91□□□□□ -0.82
CLDND1-229ENST00000513988 TMOD2Q9NZR1 351 aa9.91□□□□□ -0.82
CLDND1-229ENST00000513988 PNMA3Q9UL41 463 aa9.91□□□□□ -0.82
CLDND1-229ENST00000513988 TACC3Q9Y6A5 838 aa9.91□□□□□ -0.82
CLDND1-229ENST00000513988 DCHS1Q96JQ0 3298 aa9.91□□□□□ -0.82
CLDND1-229ENST00000513988 RIF1Q5UIP0 2472 aaKnown RBP9.9□□□□□ -0.82
CLDND1-229ENST00000513988 GTPBP6O43824 516 aaPredicted RBP9.9□□□□□ -0.82
CLDND1-229ENST00000513988 SSTR3P32745 418 aaPredicted RBP9.9□□□□□ -0.82
CLDND1-229ENST00000513988 CRKP46108 304 aa9.9□□□□□ -0.82
CLDND1-229ENST00000513988 GCLCP48506 637 aaPredicted RBP9.9□□□□□ -0.82
CLDND1-229ENST00000513988 KCTD2Q14681 263 aa9.9□□□□□ -0.82
CLDND1-229ENST00000513988 AMER1Q5JTC6 1135 aaPredicted RBP9.9□□□□□ -0.82
CLDND1-229ENST00000513988 ZNF804AQ7Z570 1209 aa9.9□□□□□ -0.82
CLDND1-229ENST00000513988 FAM83AQ86UY5 434 aa9.9□□□□□ -0.82
CLDND1-229ENST00000513988 LPAR1Q92633 364 aa9.9□□□□□ -0.82
CLDND1-229ENST00000513988 MFSD14AQ96MC6 490 aa9.9□□□□□ -0.82
CLDND1-229ENST00000513988 NKX2-4Q9H2Z4 354 aa9.9□□□□□ -0.82
CLDND1-229ENST00000513988 ZNF112Q9UJU3 913 aa9.9□□□□□ -0.82
CLDND1-229ENST00000513988 ANKRD11Q6UB99 2663 aaPredicted RBP9.89□□□□□ -0.83
CLDND1-229ENST00000513988 KBTBD13C9JR72 458 aa9.89□□□□□ -0.83
CLDND1-229ENST00000513988 MSCO60682 206 aa9.89□□□□□ -0.83
CLDND1-229ENST00000513988 IL1R1P14778 569 aa9.89□□□□□ -0.83
CLDND1-229ENST00000513988 ID4P47928 161 aa9.89□□□□□ -0.83
CLDND1-229ENST00000513988 TLE2Q04725 743 aa9.89□□□□□ -0.83
CLDND1-229ENST00000513988 SNX17Q15036 470 aa9.89□□□□□ -0.83
CLDND1-229ENST00000513988 GJC2Q5T442 439 aaPredicted RBP9.89□□□□□ -0.83
CLDND1-229ENST00000513988 HFE2Q6ZVN8 426 aa9.89□□□□□ -0.83
CLDND1-229ENST00000513988 PRSS33Q8NF86 280 aa9.89□□□□□ -0.83
CLDND1-229ENST00000513988 ANKS1AQ92625 1134 aa9.89□□□□□ -0.83
CLDND1-229ENST00000513988 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.89□□□□□ -0.83
CLDND1-229ENST00000513988 DDX20Q9UHI6 824 aaKnown RBP9.89□□□□□ -0.83
CLDND1-229ENST00000513988 AGTPBP1Q9UPW5 1226 aa9.89□□□□□ -0.83
CLDND1-229ENST00000513988 DAGLAQ9Y4D2 1042 aa9.89□□□□□ -0.83
CLDND1-229ENST00000513988 ZHX2Q9Y6X8 837 aa9.89□□□□□ -0.83
CLDND1-229ENST00000513988 DCXO43602 365 aa9.88□□□□□ -0.83
CLDND1-229ENST00000513988 PCCAP05165 728 aaPredicted RBP9.88□□□□□ -0.83
CLDND1-229ENST00000513988 CLTBP09497 229 aa9.88□□□□□ -0.83
CLDND1-229ENST00000513988 CNGA1P29973 690 aa9.88□□□□□ -0.83
CLDND1-229ENST00000513988 IGHMBP2P38935 993 aaKnown RBP9.88□□□□□ -0.83
CLDND1-229ENST00000513988 CTSWP56202 376 aa9.88□□□□□ -0.83
CLDND1-229ENST00000513988 CCL14Q16627 93 aa9.88□□□□□ -0.83
CLDND1-229ENST00000513988 MFSD14BQ5SR56 506 aa9.88□□□□□ -0.83
CLDND1-229ENST00000513988 CCDC174Q6PII3 467 aa9.88□□□□□ -0.83
CLDND1-229ENST00000513988 ARRDC4Q8NCT1 418 aa9.88□□□□□ -0.83
CLDND1-229ENST00000513988 JARID2Q92833 1246 aaPredicted RBP9.88□□□□□ -0.83
CLDND1-229ENST00000513988 PICK1Q9NRD5 415 aa9.88□□□□□ -0.83
CLDND1-229ENST00000513988 TSPYL4Q9UJ04 414 aa9.88□□□□□ -0.83
CLDND1-229ENST00000513988 CACNA1HO95180 2353 aa9.88□□□□□ -0.83
CLDND1-229ENST00000513988 NCOR2Q9Y618 2525 aa9.88□□□□□ -0.83
CLDND1-229ENST00000513988 ZFHX4Q86UP3 3567 aa9.88□□□□□ -0.83
CLDND1-229ENST00000513988 FAM186AA6NE01 2351 aa9.87□□□□□ -0.83
CLDND1-229ENST00000513988 ACACBO00763 2458 aa9.87□□□□□ -0.83
CLDND1-229ENST00000513988 KIAA0355O15063 1070 aa9.87□□□□□ -0.83
CLDND1-229ENST00000513988 GREM2Q9H772 168 aa9.87□□□□□ -0.83
CLDND1-229ENST00000513988 CFAP47Q6ZTR5 3102 aa9.87□□□□□ -0.83
CLDND1-229ENST00000513988 A0A0G2JMZ2 1700 aa9.87□□□□□ -0.83
CLDND1-229ENST00000513988 BRWD1Q9NSI6 2320 aa9.87□□□□□ -0.83
CLDND1-229ENST00000513988 RGS2P41220 211 aa9.86□□□□□ -0.83
CLDND1-229ENST00000513988 COL9A2Q14055 689 aaPredicted RBP9.86□□□□□ -0.83
CLDND1-229ENST00000513988 C1orf53Q5VUE5 145 aa9.86□□□□□ -0.83
CLDND1-229ENST00000513988 FKBP1CQ5VVH2 108 aa9.86□□□□□ -0.83
CLDND1-229ENST00000513988 MFSD14CQ5VZR4 134 aa9.86□□□□□ -0.83
CLDND1-229ENST00000513988 FAM178BQ8IXR5 827 aa9.86□□□□□ -0.83
CLDND1-229ENST00000513988 PRRX2Q99811 253 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms