RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 PDZD8Q8NEN9 1154 aa12.44□□□□□ -0.42
LIMCH1-208ENST00000508501 JPH4Q96JJ6 628 aa12.44□□□□□ -0.42
LIMCH1-208ENST00000508501 OLFM3Q96PB7 478 aa12.44□□□□□ -0.42
LIMCH1-208ENST00000508501 CCDC8Q9H0W5 538 aaPredicted RBP12.44□□□□□ -0.42
LIMCH1-208ENST00000508501 PIK3R4Q99570 1358 aa12.44□□□□□ -0.42
LIMCH1-208ENST00000508501 ARHGAP10A1A4S6 786 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 FAM177BA6PVY3 158 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 ATP5HO75947 161 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 EEF1DP29692 281 aaKnown RBP12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 MAN1A1P33908 653 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 GJC1P36383 396 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 WDR44Q5JSH3 913 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 MCF2L2Q86YR7 1114 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 CCDC89Q8N998 374 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 LRGUKQ96M69 825 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 RNF14Q9UBS8 474 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 LMNB1P20700 586 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 KRT9P35527 623 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 TMCO5AQ8N6Q1 288 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 KIFC2Q96AC6 838 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 ORC6Q9Y5N6 252 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 A0A1B0GVL5 298 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 NCBP1Q09161 790 aaKnown RBP12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 SV2BQ7L1I2 683 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 HEATR3Q7Z4Q2 680 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 ANKRD44Q8N8A2 993 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 RABEP2Q9H5N1 569 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 BATF3Q9NR55 127 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 SAMM50Q9Y512 469 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 CCDC151A5D8V7 595 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 MARCKSP29966 332 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 CCT5P48643 541 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 C20orf194Q5TEA3 1177 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 PEX26Q7Z412 305 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 CCDC105Q8IYK2 499 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 RHPN1Q8TCX5 695 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 KLHL29Q96CT2 875 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 GLT8D2Q9H1C3 349 aa12.43□□□□□ -0.42
LIMCH1-208ENST00000508501 CTAGE3PQ8IX95 158 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 LRRC8CQ8TDW0 803 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 CCDC138Q96M89 665 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 SLC12A5Q9H2X9 1139 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 CBX8Q9HC52 389 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 APOBRQ0VD83 1088 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 CFAP70Q5T0N1 1121 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 NECAB1Q8N987 351 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 TMEM232C9JQI7 657 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 SLC12A2P55011 1212 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 SLC8A3P57103 927 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 ST5P78524 1137 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 ASPHQ12797 758 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 IFIT1BQ5T764 474 aaKnown RBP12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 DHX32Q7L7V1 743 aaKnown RBP12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 ZNF354CQ86Y25 554 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 SERPINB6P35237 376 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 LONP1P36776 959 aaKnown RBP12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 FLIIQ13045 1269 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 CUL4BQ13620 913 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 PPP2R5BQ15173 497 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 Q6ZUG5 572 aa12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 ENAHQ8N8S7 591 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-208ENST00000508501 SYNRGQ9UMZ2 1314 aa12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 ALDH1L1O75891 902 aa12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 GNA14O95837 355 aa12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 PAK1Q13153 545 aa12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 PDXDC1Q6P996 788 aa12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 CCDC117Q8IWD4 279 aaPredicted RBP12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 ZGPATQ8N5A5 531 aaKnown RBP12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 KCNG1Q9UIX4 513 aa12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 AMFRQ9UKV5 643 aa12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 ANKRD36BQ8N2N9 1353 aa12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 CALUO43852 315 aaPredicted RBP12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 FNBP4Q8N3X1 1017 aaPredicted RBP12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 KCNH5Q8NCM2 988 aa12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 EIF3DO15371 548 aaKnown RBP eCLIP12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 DDX54Q8TDD1 881 aaKnown RBP12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 AFG3L2Q9Y4W6 797 aa12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 NBPF14Q5TI25 921 aa12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 RSBN1LQ6PCB5 846 aaPredicted RBP12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 RMDN2Q96LZ7 410 aa12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 IWS1Q96ST2 819 aa12.41□□□□□ -0.42
LIMCH1-208ENST00000508501 PYGBP11216 843 aa12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 EPHB4P54760 987 aa12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 STX17P56962 302 aa12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 HSP90AA4PQ58FG1 418 aa12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 MUM1L1Q5H9M0 696 aa12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 KRT80Q6KB66 452 aa12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 PSPC1Q8WXF1 523 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 SERPINI1Q99574 410 aa12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 JPH2Q9BR39 696 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 TEX13AQ9BXU3 409 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 GIMAP4Q9NUV9 329 aa12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 INTS9Q9NV88 658 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 TRAF5O00463 557 aa12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 RAP1GDS1P52306 607 aa12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 ALS2CLQ60I27 953 aa12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 CCDC13Q8IYE1 715 aa12.4□□□□□ -0.42
LIMCH1-208ENST00000508501 OR8K1Q8NGG5 319 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms