RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 LATS2Q9NRM7 1088 aa6.89□□□□□ -1.31
NUP54-206ENST00000508465 KIF15Q9NS87 1388 aa6.89□□□□□ -1.31
NUP54-206ENST00000508465 DAPK1P53355 1430 aa6.89□□□□□ -1.31
NUP54-206ENST00000508465 CNTLNQ9NXG0 1405 aa6.89□□□□□ -1.31
NUP54-206ENST00000508465 C3P01024 1663 aa6.88□□□□□ -1.31
NUP54-206ENST00000508465 PLXNC1O60486 1568 aa6.88□□□□□ -1.31
NUP54-206ENST00000508465 METTL12A8MUP2 240 aa6.88□□□□□ -1.31
NUP54-206ENST00000508465 CYP27C1Q4G0S4 372 aa6.88□□□□□ -1.31
NUP54-206ENST00000508465 BCL7CQ8WUZ0 217 aaPredicted RBP6.88□□□□□ -1.31
NUP54-206ENST00000508465 CCDC97Q96F63 343 aaPredicted RBP6.88□□□□□ -1.31
NUP54-206ENST00000508465 MISP3Q96FF7 219 aa6.88□□□□□ -1.31
NUP54-206ENST00000508465 ACSS3Q9H6R3 686 aa6.88□□□□□ -1.31
NUP54-206ENST00000508465 ZFYVE28Q9HCC9 887 aa6.88□□□□□ -1.31
NUP54-206ENST00000508465 AP4E1Q9UPM8 1137 aa6.88□□□□□ -1.31
NUP54-206ENST00000508465 MTMR7Q9Y216 660 aa6.88□□□□□ -1.31
NUP54-206ENST00000508465 CLTCQ00610 1675 aaKnown RBP6.87□□□□□ -1.31
NUP54-206ENST00000508465 ADGBQ8N7X0 1667 aa6.87□□□□□ -1.31
NUP54-206ENST00000508465 TCOF1Q13428 1488 aaKnown RBP6.87□□□□□ -1.31
NUP54-206ENST00000508465 PTPRKQ15262 1439 aa6.87□□□□□ -1.31
NUP54-206ENST00000508465 UHRF1BP1Q6BDS2 1440 aa6.87□□□□□ -1.31
NUP54-206ENST00000508465 ANKRD30AQ9BXX3 1397 aa6.87□□□□□ -1.31
NUP54-206ENST00000508465 ZNF423Q2M1K9 1284 aa6.87□□□□□ -1.31
NUP54-206ENST00000508465 FAM105AQ9NUU6 356 aa6.87□□□□□ -1.31
NUP54-206ENST00000508465 NCOA1Q15788 1441 aa6.86□□□□□ -1.31
NUP54-206ENST00000508465 SETD1BQ9UPS6 1966 aaKnown RBP6.86□□□□□ -1.31
NUP54-206ENST00000508465 PAPLNO95428 1278 aa6.86□□□□□ -1.31
NUP54-206ENST00000508465 NPR3P17342 541 aa6.86□□□□□ -1.31
NUP54-206ENST00000508465 CCNJLQ8IV13 435 aa6.86□□□□□ -1.31
NUP54-206ENST00000508465 LIN7BQ9HAP6 207 aa6.86□□□□□ -1.31
NUP54-206ENST00000508465 SERPINA10Q9UK55 444 aa6.86□□□□□ -1.31
NUP54-206ENST00000508465 DAGLAQ9Y4D2 1042 aa6.86□□□□□ -1.31
NUP54-206ENST00000508465 TNRQ92752 1358 aa6.85□□□□□ -1.31
NUP54-206ENST00000508465 FARP2O94887 1054 aaPredicted RBP6.85□□□□□ -1.31
NUP54-206ENST00000508465 MTMR3Q13615 1198 aa6.85□□□□□ -1.31
NUP54-206ENST00000508465 PKN1Q16512 942 aa6.85□□□□□ -1.31
NUP54-206ENST00000508465 ZNF792Q3KQV3 632 aa6.85□□□□□ -1.31
NUP54-206ENST00000508465 ZNF648Q5T619 568 aaPredicted RBP6.85□□□□□ -1.31
NUP54-206ENST00000508465 GSX1Q9H4S2 264 aaPredicted RBP6.85□□□□□ -1.31
NUP54-206ENST00000508465 C1GALT1Q9NS00 363 aa6.85□□□□□ -1.31
NUP54-206ENST00000508465 MAST1Q9Y2H9 1570 aa6.85□□□□□ -1.31
NUP54-206ENST00000508465 NPATQ14207 1427 aa6.84□□□□□ -1.31
NUP54-206ENST00000508465 DBX1A6NMT0 343 aa6.84□□□□□ -1.31
NUP54-206ENST00000508465 POLR3DP05423 398 aaPredicted RBP6.84□□□□□ -1.31
NUP54-206ENST00000508465 CTSBP07858 339 aa6.84□□□□□ -1.31
NUP54-206ENST00000508465 SF3B2Q13435 895 aaKnown RBP6.84□□□□□ -1.31
NUP54-206ENST00000508465 SEZ6L2Q6UXD5 910 aa6.84□□□□□ -1.31
NUP54-206ENST00000508465 ATG4DQ86TL0 474 aaPredicted RBP6.84□□□□□ -1.31
NUP54-206ENST00000508465 DUOX2Q9NRD8 1548 aa6.84□□□□□ -1.31
NUP54-206ENST00000508465 CFAP65Q6ZU64 1925 aaKnown RBP6.84□□□□□ -1.32
NUP54-206ENST00000508465 DNMT1P26358 1616 aaKnown RBP6.83□□□□□ -1.32
NUP54-206ENST00000508465 SYNGAP1Q96PV0 1343 aa6.83□□□□□ -1.32
NUP54-206ENST00000508465 A0A1W2PP55 124 aa6.83□□□□□ -1.32
NUP54-206ENST00000508465 AOC2O75106 756 aa6.83□□□□□ -1.32
NUP54-206ENST00000508465 NEFLP07196 543 aa6.83□□□□□ -1.32
NUP54-206ENST00000508465 SSFA2P28290 1259 aa6.83□□□□□ -1.32
NUP54-206ENST00000508465 GRIA4P48058 902 aa6.83□□□□□ -1.32
NUP54-206ENST00000508465 FKBP4Q02790 459 aaKnown RBP eCLIP6.83□□□□□ -1.32
NUP54-206ENST00000508465 PDE3AQ14432 1141 aa6.83□□□□□ -1.32
NUP54-206ENST00000508465 SPRED3Q2MJR0 410 aa6.83□□□□□ -1.32
NUP54-206ENST00000508465 ZNF574Q6ZN55 896 aaPredicted RBP6.83□□□□□ -1.32
NUP54-206ENST00000508465 SPRED2Q7Z698 418 aa6.83□□□□□ -1.32
NUP54-206ENST00000508465 GALNT12Q8IXK2 581 aa6.83□□□□□ -1.32
NUP54-206ENST00000508465 THEMISQ8N1K5 641 aaPredicted RBP6.83□□□□□ -1.32
NUP54-206ENST00000508465 NETO1Q8TDF5 533 aa6.83□□□□□ -1.32
NUP54-206ENST00000508465 LGR6Q9HBX8 967 aa6.83□□□□□ -1.32
NUP54-206ENST00000508465 PREX1Q8TCU6 1659 aa6.83□□□□□ -1.32
NUP54-206ENST00000508465 KANK1Q14678 1352 aa6.82□□□□□ -1.32
NUP54-206ENST00000508465 SHANK2Q9UPX8 1470 aa6.82□□□□□ -1.32
NUP54-206ENST00000508465 FZD6O60353 706 aa6.82□□□□□ -1.32
NUP54-206ENST00000508465 BNIP3Q12983 259 aa6.82□□□□□ -1.32
NUP54-206ENST00000508465 IDI1Q13907 227 aa6.82□□□□□ -1.32
NUP54-206ENST00000508465 KSR1Q8IVT5 923 aa6.82□□□□□ -1.32
NUP54-206ENST00000508465 GJD3Q8N144 294 aa6.82□□□□□ -1.32
NUP54-206ENST00000508465 TCF12Q99081 682 aa6.82□□□□□ -1.32
NUP54-206ENST00000508465 ANKRD50Q9ULJ7 1429 aa6.82□□□□□ -1.32
NUP54-206ENST00000508465 STRCQ7RTU9 1775 aa6.82□□□□□ -1.32
NUP54-206ENST00000508465 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.82□□□□□ -1.32
NUP54-206ENST00000508465 ABCC3O15438 1527 aa6.81□□□□□ -1.32
NUP54-206ENST00000508465 KDM5DQ9BY66 1539 aa6.81□□□□□ -1.32
NUP54-206ENST00000508465 MROH2AA6NES4 1674 aa6.81□□□□□ -1.32
NUP54-206ENST00000508465 PZPP20742 1482 aa6.81□□□□□ -1.32
NUP54-206ENST00000508465 CAMSAP1Q5T5Y3 1602 aa6.81□□□□□ -1.32
NUP54-206ENST00000508465 DYNC1LI2O43237 492 aaPredicted RBP6.81□□□□□ -1.32
NUP54-206ENST00000508465 B3GALT4O96024 378 aa6.81□□□□□ -1.32
NUP54-206ENST00000508465 HNRNPUQ00839 825 aaKnown RBP eCLIP6.81□□□□□ -1.32
NUP54-206ENST00000508465 ZNF124Q15973 351 aa6.81□□□□□ -1.32
NUP54-206ENST00000508465 ANKLE2Q86XL3 938 aa6.81□□□□□ -1.32
NUP54-206ENST00000508465 FAM168AQ92567 244 aa6.81□□□□□ -1.32
NUP54-206ENST00000508465 SLC38A3Q99624 504 aa6.81□□□□□ -1.32
NUP54-206ENST00000508465 TRIM56Q9BRZ2 755 aaKnown RBP6.81□□□□□ -1.32
NUP54-206ENST00000508465 PIDD1Q9HB75 910 aa6.81□□□□□ -1.32
NUP54-206ENST00000508465 RC3H2Q9HBD1 1191 aaKnown RBP6.81□□□□□ -1.32
NUP54-206ENST00000508465 VAV3Q9UKW4 847 aa6.81□□□□□ -1.32
NUP54-206ENST00000508465 ZNF335Q9H4Z2 1342 aaPredicted RBP6.8□□□□□ -1.32
NUP54-206ENST00000508465 MROH1Q8NDA8 1641 aa6.8□□□□□ -1.32
NUP54-206ENST00000508465 SLFN14P0C7P3 912 aa6.8□□□□□ -1.32
NUP54-206ENST00000508465 FUT4P22083 530 aa6.8□□□□□ -1.32
NUP54-206ENST00000508465 AP3B2Q13367 1082 aa6.8□□□□□ -1.32
NUP54-206ENST00000508465 TXNDC2Q86VQ3 553 aa6.8□□□□□ -1.32
NUP54-206ENST00000508465 PI4K2BQ8TCG2 481 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms