RNA–Protein interactions for RNA: ENST00000504663.1

TPM3-217, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-217ENST00000504663 ZFPM1Q8IX07 1006 aa12.31□□□□□ -0.44
TPM3-217ENST00000504663 NCOA7Q8NI08 942 aa12.31□□□□□ -0.44
TPM3-217ENST00000504663 PRMT6Q96LA8 375 aaPredicted RBP12.31□□□□□ -0.44
TPM3-217ENST00000504663 IDI2Q9BXS1 227 aa12.31□□□□□ -0.44
TPM3-217ENST00000504663 SENP2Q9HC62 589 aa12.31□□□□□ -0.44
TPM3-217ENST00000504663 CNTNAP1P78357 1384 aa12.3□□□□□ -0.44
TPM3-217ENST00000504663 ATRNL1Q5VV63 1379 aa12.3□□□□□ -0.44
TPM3-217ENST00000504663 MINDY4BA8MYZ0 360 aa12.3□□□□□ -0.44
TPM3-217ENST00000504663 PRC1O43663 620 aa12.3□□□□□ -0.44
TPM3-217ENST00000504663 USP5P45974 858 aa12.3□□□□□ -0.44
TPM3-217ENST00000504663 IGDCC4Q8TDY8 1250 aa12.3□□□□□ -0.44
TPM3-217ENST00000504663 OSBPL5Q9H0X9 879 aaPredicted RBP12.3□□□□□ -0.44
TPM3-217ENST00000504663 USP40Q9NVE5 1235 aa12.3□□□□□ -0.44
TPM3-217ENST00000504663 MCM9Q9NXL9 1143 aa12.3□□□□□ -0.44
TPM3-217ENST00000504663 NID2Q14112 1375 aa12.3□□□□□ -0.44
TPM3-217ENST00000504663 SOCS7O14512 581 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 KDM4AO75164 1064 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 EGFRP00533 1210 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 LMNB1P20700 586 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 CACNB3P54284 484 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 SEC23AQ15436 765 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 SLC4A8Q2Y0W8 1093 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 SLC44A5Q8NCS7 719 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 JDP2Q8WYK2 163 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 BRF1Q92994 677 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 DYNLL2Q96FJ2 89 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 NOL10Q9BSC4 688 aaKnown RBP12.29□□□□□ -0.44
TPM3-217ENST00000504663 DNAJC18Q9H819 358 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 LY9Q9HBG7 655 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 ZSWIM5Q9P217 1185 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 PGAP2Q9UHJ9 254 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 SAP30BPQ9UHR5 308 aaKnown RBP12.29□□□□□ -0.44
TPM3-217ENST00000504663 BRPF3Q9ULD4 1205 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 LIMCH1Q9UPQ0 1083 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 HPS5Q9UPZ3 1129 aa12.29□□□□□ -0.44
TPM3-217ENST00000504663 PRDM1O75626 825 aa12.28□□□□□ -0.44
TPM3-217ENST00000504663 SLURP2P0DP57 97 aa12.28□□□□□ -0.44
TPM3-217ENST00000504663 PCP11498 1178 aaKnown RBP12.28□□□□□ -0.44
TPM3-217ENST00000504663 RPS12P25398 132 aaKnown RBP12.28□□□□□ -0.44
TPM3-217ENST00000504663 MCM5P33992 734 aa12.28□□□□□ -0.44
TPM3-217ENST00000504663 GMPSP49915 693 aaPredicted RBP12.28□□□□□ -0.44
TPM3-217ENST00000504663 APOBRQ0VD83 1088 aa12.28□□□□□ -0.44
TPM3-217ENST00000504663 SPDYE2Q495Y8 402 aa12.28□□□□□ -0.44
TPM3-217ENST00000504663 MFSD6Q6ZSS7 791 aa12.28□□□□□ -0.44
TPM3-217ENST00000504663 C16orf86Q6ZW13 317 aa12.28□□□□□ -0.44
TPM3-217ENST00000504663 STK11IPQ8N1F8 1099 aa12.28□□□□□ -0.44
TPM3-217ENST00000504663 PLIN4Q96Q06 1357 aa12.28□□□□□ -0.44
TPM3-217ENST00000504663 PAPPA2Q9BXP8 1791 aa12.28□□□□□ -0.44
TPM3-217ENST00000504663 PFKFB2O60825 505 aa12.27□□□□□ -0.45
TPM3-217ENST00000504663 RASA1P20936 1047 aa12.27□□□□□ -0.45
TPM3-217ENST00000504663 PICALMQ13492 652 aa12.27□□□□□ -0.45
TPM3-217ENST00000504663 ANKRD1Q15327 319 aa12.27□□□□□ -0.45
TPM3-217ENST00000504663 ARHGAP27Q6ZUM4 889 aa12.27□□□□□ -0.45
TPM3-217ENST00000504663 RALYLQ86SE5 291 aaKnown RBP12.27□□□□□ -0.45
TPM3-217ENST00000504663 SGMS1Q86VZ5 419 aa12.27□□□□□ -0.45
TPM3-217ENST00000504663 METTL16Q86W50 562 aaKnown RBP12.27□□□□□ -0.45
TPM3-217ENST00000504663 NECAB1Q8N987 351 aa12.27□□□□□ -0.45
TPM3-217ENST00000504663 DPF2Q92785 391 aa12.27□□□□□ -0.45
TPM3-217ENST00000504663 GTF3C6Q969F1 213 aa12.27□□□□□ -0.45
TPM3-217ENST00000504663 INTS4Q96HW7 963 aaKnown RBP12.27□□□□□ -0.45
TPM3-217ENST00000504663 KRT23Q9C075 422 aa12.27□□□□□ -0.45
TPM3-217ENST00000504663 RNF41Q9H4P4 317 aaPredicted RBP12.27□□□□□ -0.45
TPM3-217ENST00000504663 TDRD3Q9H7E2 651 aaKnown RBP12.27□□□□□ -0.45
TPM3-217ENST00000504663 CNNM2Q9H8M5 875 aa12.27□□□□□ -0.45
TPM3-217ENST00000504663 ZNF70Q9UC06 446 aaPredicted RBP12.27□□□□□ -0.45
TPM3-217ENST00000504663 DDTLA6NHG4 134 aaPredicted RBP12.26□□□□□ -0.45
TPM3-217ENST00000504663 DTNBO60941 627 aa12.26□□□□□ -0.45
TPM3-217ENST00000504663 CTDNEP1O95476 244 aa12.26□□□□□ -0.45
TPM3-217ENST00000504663 SHMT1P34896 483 aa12.26□□□□□ -0.45
TPM3-217ENST00000504663 NOVP48745 357 aa12.26□□□□□ -0.45
TPM3-217ENST00000504663 SCRN1Q12765 414 aa12.26□□□□□ -0.45
TPM3-217ENST00000504663 TNIP1Q15025 636 aa12.26□□□□□ -0.45
TPM3-217ENST00000504663 RCSD1Q6JBY9 416 aa12.26□□□□□ -0.45
TPM3-217ENST00000504663 ZSCAN31Q96LW9 406 aaPredicted RBP12.26□□□□□ -0.45
TPM3-217ENST00000504663 MTA3Q9BTC8 594 aa12.26□□□□□ -0.45
TPM3-217ENST00000504663 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.26□□□□□ -0.45
TPM3-217ENST00000504663 SLKQ9H2G2 1235 aaPredicted RBP12.26□□□□□ -0.45
TPM3-217ENST00000504663 SH2B1Q9NRF2 756 aaPredicted RBP12.26□□□□□ -0.45
TPM3-217ENST00000504663 ANGEL1Q9UNK9 670 aaKnown RBP12.26□□□□□ -0.45
TPM3-217ENST00000504663 WNT10BO00744 389 aa12.25□□□□□ -0.45
TPM3-217ENST00000504663 ENTPD3O75355 529 aa12.25□□□□□ -0.45
TPM3-217ENST00000504663 PDIA3P30101 505 aaKnown RBP12.25□□□□□ -0.45
TPM3-217ENST00000504663 CDK8P49336 464 aa12.25□□□□□ -0.45
TPM3-217ENST00000504663 EIF6P56537 245 aaKnown RBP12.25□□□□□ -0.45
TPM3-217ENST00000504663 TRDNQ13061 729 aa12.25□□□□□ -0.45
TPM3-217ENST00000504663 NBPF9Q3BBW0 867 aa12.25□□□□□ -0.45
TPM3-217ENST00000504663 CCDC83Q8IWF9 413 aa12.25□□□□□ -0.45
TPM3-217ENST00000504663 CDAN1Q8IWY9 1227 aa12.25□□□□□ -0.45
TPM3-217ENST00000504663 ZNF274Q96GC6 653 aaPredicted RBP12.25□□□□□ -0.45
TPM3-217ENST00000504663 TMEM87BQ96K49 555 aa12.25□□□□□ -0.45
TPM3-217ENST00000504663 ZKSCAN3Q9BRR0 538 aa12.25□□□□□ -0.45
TPM3-217ENST00000504663 EHD4Q9H223 541 aa12.25□□□□□ -0.45
TPM3-217ENST00000504663 MYOZ2Q9NPC6 264 aa12.25□□□□□ -0.45
TPM3-217ENST00000504663 IL17RBQ9NRM6 502 aa12.25□□□□□ -0.45
TPM3-217ENST00000504663 ASTN2O75129 1339 aaPredicted RBP12.25□□□□□ -0.45
TPM3-217ENST00000504663 IGKV6D-41A0A0C4DH26 115 aa12.24□□□□□ -0.45
TPM3-217ENST00000504663 CLRN2A0PK11 232 aa12.24□□□□□ -0.45
TPM3-217ENST00000504663 NMT2O60551 498 aa12.24□□□□□ -0.45
TPM3-217ENST00000504663 TNKSO95271 1327 aa12.24□□□□□ -0.45
TPM3-217ENST00000504663 LIFRP42702 1097 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms