RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 VEZTQ9HBM0 779 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 USP40Q9NVE5 1235 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 TMOD2Q9NZR1 351 aa12.08□□□□□ -0.48
NUP54-203ENST00000504173 MAGEB6P1A0A0J9YX57 407 aa12.07□□□□□ -0.48
NUP54-203ENST00000504173 MANSC4A6NHS7 340 aaPredicted RBP12.07□□□□□ -0.48
NUP54-203ENST00000504173 PLCG2P16885 1265 aa12.07□□□□□ -0.48
NUP54-203ENST00000504173 CAP1Q01518 475 aa12.07□□□□□ -0.48
NUP54-203ENST00000504173 MKRN3Q13064 507 aaKnown RBP12.07□□□□□ -0.48
NUP54-203ENST00000504173 BMP2KLQ5H9B9 411 aa12.07□□□□□ -0.48
NUP54-203ENST00000504173 CDC42EP5Q6NZY7 148 aa12.07□□□□□ -0.48
NUP54-203ENST00000504173 APPBP2Q92624 585 aa12.07□□□□□ -0.48
NUP54-203ENST00000504173 HTATIP2Q9BUP3 242 aa12.07□□□□□ -0.48
NUP54-203ENST00000504173 ZNF70Q9UC06 446 aaPredicted RBP12.07□□□□□ -0.48
NUP54-203ENST00000504173 ECM29Q5VYK3 1845 aa12.07□□□□□ -0.48
NUP54-203ENST00000504173 LAMB1P07942 1786 aa12.06□□□□□ -0.48
NUP54-203ENST00000504173 HIP1O00291 1037 aa12.06□□□□□ -0.48
NUP54-203ENST00000504173 CACNB3P54284 484 aa12.06□□□□□ -0.48
NUP54-203ENST00000504173 PPP4CP60510 307 aa12.06□□□□□ -0.48
NUP54-203ENST00000504173 DYNLL1P63167 89 aaKnown RBP12.06□□□□□ -0.48
NUP54-203ENST00000504173 TICAM2Q86XR7 235 aa12.06□□□□□ -0.48
NUP54-203ENST00000504173 CERS3Q8IU89 383 aa12.06□□□□□ -0.48
NUP54-203ENST00000504173 APOBEC3FQ8IUX4 373 aaKnown RBP12.06□□□□□ -0.48
NUP54-203ENST00000504173 SHISA4Q96DD7 197 aa12.06□□□□□ -0.48
NUP54-203ENST00000504173 DIAPH3Q9NSV4 1193 aa12.06□□□□□ -0.48
NUP54-203ENST00000504173 TCP10L2B9ZVM9 353 aa12.05□□□□□ -0.48
NUP54-203ENST00000504173 IGF2BP3O00425 579 aaKnown RBP eCLIP12.05□□□□□ -0.48
NUP54-203ENST00000504173 MBD4O95243 580 aa12.05□□□□□ -0.48
NUP54-203ENST00000504173 RHBDL3P58872 404 aa12.05□□□□□ -0.48
NUP54-203ENST00000504173 SP3Q02447 781 aa12.05□□□□□ -0.48
NUP54-203ENST00000504173 TNFAIP1Q13829 316 aa12.05□□□□□ -0.48
NUP54-203ENST00000504173 ZMYM1Q5SVZ6 1142 aa12.05□□□□□ -0.48
NUP54-203ENST00000504173 LDLRAD1Q5T700 205 aa12.05□□□□□ -0.48
NUP54-203ENST00000504173 TEX11Q8IYF3 940 aa12.05□□□□□ -0.48
NUP54-203ENST00000504173 SH3RF3Q8TEJ3 882 aaPredicted RBP12.05□□□□□ -0.48
NUP54-203ENST00000504173 PUS7LQ9H0K6 701 aaKnown RBP12.05□□□□□ -0.48
NUP54-203ENST00000504173 PTCH2Q9Y6C5 1203 aa12.05□□□□□ -0.48
NUP54-203ENST00000504173 M0R2C6 588 aa12.04□□□□□ -0.48
NUP54-203ENST00000504173 HOXD11P31277 338 aaPredicted RBP12.04□□□□□ -0.48
NUP54-203ENST00000504173 TNNI2P48788 182 aa12.04□□□□□ -0.48
NUP54-203ENST00000504173 NMIQ13287 307 aaPredicted RBP12.04□□□□□ -0.48
NUP54-203ENST00000504173 PICALMQ13492 652 aa12.04□□□□□ -0.48
NUP54-203ENST00000504173 ARHGEF6Q15052 776 aa12.04□□□□□ -0.48
NUP54-203ENST00000504173 PPP4R3CPQ6ZMV5 832 aa12.04□□□□□ -0.48
NUP54-203ENST00000504173 Q7L0L9 218 aa12.04□□□□□ -0.48
NUP54-203ENST00000504173 LCORLQ8N3X6 602 aa12.04□□□□□ -0.48
NUP54-203ENST00000504173 OSBP2Q969R2 916 aa12.04□□□□□ -0.48
NUP54-203ENST00000504173 SEC62Q99442 399 aaKnown RBP12.04□□□□□ -0.48
NUP54-203ENST00000504173 RIOK1Q9BRS2 568 aaKnown RBP12.04□□□□□ -0.48
NUP54-203ENST00000504173 CRNKL1Q9BZJ0 848 aaKnown RBP12.04□□□□□ -0.48
NUP54-203ENST00000504173 ARMT1Q9H993 441 aa12.04□□□□□ -0.48
NUP54-203ENST00000504173 SCAF8Q9UPN6 1271 aaKnown RBP12.04□□□□□ -0.48
NUP54-203ENST00000504173 A0A0D9SFI3 127 aa12.03□□□□□ -0.48
NUP54-203ENST00000504173 GPAA1O43292 621 aa12.03□□□□□ -0.48
NUP54-203ENST00000504173 WDHD1O75717 1129 aaPredicted RBP12.03□□□□□ -0.48
NUP54-203ENST00000504173 ZBTB48P10074 688 aaPredicted RBP12.03□□□□□ -0.48
NUP54-203ENST00000504173 BMP8BP34820 402 aa12.03□□□□□ -0.48
NUP54-203ENST00000504173 USP5P45974 858 aa12.03□□□□□ -0.48
NUP54-203ENST00000504173 TCP10Q12799 353 aa12.03□□□□□ -0.48
NUP54-203ENST00000504173 NFIAQ12857 509 aa12.03□□□□□ -0.48
NUP54-203ENST00000504173 CRHR2Q13324 411 aa12.03□□□□□ -0.48
NUP54-203ENST00000504173 TTLL12Q14166 644 aaPredicted RBP12.03□□□□□ -0.48
NUP54-203ENST00000504173 LRIT3Q3SXY7 679 aa12.03□□□□□ -0.48
NUP54-203ENST00000504173 FKBP1CQ5VVH2 108 aa12.03□□□□□ -0.48
NUP54-203ENST00000504173 CWC27Q6UX04 472 aaKnown RBP12.03□□□□□ -0.48
NUP54-203ENST00000504173 TGFBRAP1Q8WUH2 860 aa12.03□□□□□ -0.48
NUP54-203ENST00000504173 FAM227BQ96M60 508 aa12.03□□□□□ -0.48
NUP54-203ENST00000504173 IDI2Q9BXS1 227 aa12.03□□□□□ -0.48
NUP54-203ENST00000504173 HELLSQ9NRZ9 838 aa12.03□□□□□ -0.48
NUP54-203ENST00000504173 MUC3AQ02505 3323 aa12.03□□□□□ -0.48
NUP54-203ENST00000504173 ENTPD3O75355 529 aa12.02□□□□□ -0.49
NUP54-203ENST00000504173 CHMLP26374 656 aa12.02□□□□□ -0.49
NUP54-203ENST00000504173 NF2P35240 595 aa12.02□□□□□ -0.49
NUP54-203ENST00000504173 RASA3Q14644 834 aa12.02□□□□□ -0.49
NUP54-203ENST00000504173 MCMDC2Q4G0Z9 681 aa12.02□□□□□ -0.49
NUP54-203ENST00000504173 CCDC129Q6ZRS4 1044 aa12.02□□□□□ -0.49
NUP54-203ENST00000504173 FAM83AQ86UY5 434 aa12.02□□□□□ -0.49
NUP54-203ENST00000504173 MAPKAPK5Q8IW41 473 aa12.02□□□□□ -0.49
NUP54-203ENST00000504173 NKX2-3Q8TAU0 364 aa12.02□□□□□ -0.49
NUP54-203ENST00000504173 DEFB129Q9H1M3 183 aa12.02□□□□□ -0.49
NUP54-203ENST00000504173 DDX4Q9NQI0 724 aaKnown RBP12.02□□□□□ -0.49
NUP54-203ENST00000504173 FAM198AQ9UFP1 575 aa12.02□□□□□ -0.49
NUP54-203ENST00000504173 PPP2R3BQ9Y5P8 575 aa12.02□□□□□ -0.49
NUP54-203ENST00000504173 CDC45O75419 566 aa12.01□□□□□ -0.49
NUP54-203ENST00000504173 NPM3O75607 178 aaKnown RBP12.01□□□□□ -0.49
NUP54-203ENST00000504173 OTUD7BQ6GQQ9 843 aa12.01□□□□□ -0.49
NUP54-203ENST00000504173 CASC1Q6TDU7 716 aa12.01□□□□□ -0.49
NUP54-203ENST00000504173 ARMC9Q7Z3E5 817 aa12.01□□□□□ -0.49
NUP54-203ENST00000504173 SDR42E1Q8WUS8 393 aa12.01□□□□□ -0.49
NUP54-203ENST00000504173 FAM151AQ8WW52 585 aa12.01□□□□□ -0.49
NUP54-203ENST00000504173 RUFY2Q8WXA3 655 aa12.01□□□□□ -0.49
NUP54-203ENST00000504173 STRBPQ96SI9 672 aaKnown RBP12.01□□□□□ -0.49
NUP54-203ENST00000504173 SLC4A4Q9Y6R1 1079 aa12.01□□□□□ -0.49
NUP54-203ENST00000504173 FLT1P17948 1338 aa12.01□□□□□ -0.49
NUP54-203ENST00000504173 CDK5RAP2Q96SN8 1893 aa12□□□□□ -0.49
NUP54-203ENST00000504173 PRKAB2O43741 272 aa12□□□□□ -0.49
NUP54-203ENST00000504173 GNAT2P19087 354 aa12□□□□□ -0.49
NUP54-203ENST00000504173 MFAP1P55081 439 aaKnown RBP12□□□□□ -0.49
NUP54-203ENST00000504173 PRAMEF18Q5VWM3 479 aa12□□□□□ -0.49
NUP54-203ENST00000504173 ZNF589Q86UQ0 364 aaPredicted RBP12□□□□□ -0.49
NUP54-203ENST00000504173 ZSCAN29Q8IWY8 852 aaPredicted RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms