RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ANKRD26Q9UPS8 1709 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 BTBD18B2RXH4 712 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CACNB3P54284 484 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 STX17P56962 302 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 LRMPQ12912 555 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 MCM6Q14566 821 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CT47A1Q5JQC4 288 aaPredicted RBP12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 AKNAD1Q5T1N1 836 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 SOGA3Q5TF21 947 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 KRT40Q6A162 431 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CCDC91Q7Z6B0 441 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 AOPEPQ8N6M6 819 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 EEF2KMTQ96G04 330 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CIAO1O76071 339 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 USP17L8P0C7I0 530 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 MCM7P33993 719 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 PPARAQ07869 468 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ZYXQ15942 572 aaKnown RBP12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 MAPK8IP1Q9UQF2 711 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 COL15A1P39059 1388 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 DLG5Q8TDM6 1919 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CAMTA1Q9Y6Y1 1673 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CCDC196A0A1B0GTZ2 297 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 SYKP43405 635 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 JAKMIP3Q5VZ66 844 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 DIS3L2Q8IYB7 885 aaKnown RBP12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ZNF710Q8N1W2 664 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 MICALL1Q8N3F8 863 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 SLC44A5Q8NCS7 719 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 NSUN7Q8NE18 718 aaKnown RBP12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 DBNDD1Q9H9R9 158 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 DDX41Q9UJV9 622 aaKnown RBP12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 MINPP1Q9UNW1 487 aa12.25□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ZNF804BA4D1E1 1349 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 COBLO75128 1261 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 SERPINB2P05120 415 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 TFAP4Q01664 338 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 NCBP1Q09161 790 aaKnown RBP12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 NFIXQ14938 502 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 INTS5Q6P9B9 1019 aaKnown RBP12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 DHX58Q96C10 678 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ZSCAN16Q9H4T2 348 aaPredicted RBP12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ZSWIM4Q9H7M6 989 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CLIC4Q9Y696 253 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CDR1P51861 262 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 SYT10Q6XYQ8 523 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CYB5R4Q7L1T6 521 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ZNF804AQ7Z570 1209 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 VEZTQ9HBM0 779 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 DDX19AQ9NUU7 478 aaKnown RBP12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 GGA1Q9UJY5 639 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 SCAF8Q9UPN6 1271 aaKnown RBP12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 TNKSO95271 1327 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 GSDMDP57764 484 aa12.24□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 OVOS2A0A0G2JMS6 1433 aa12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 NCOA3Q9Y6Q9 1424 aa12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CAMTA2O94983 1202 aa12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 NR5A1Q13285 461 aa12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 MRPS27Q92552 414 aaKnown RBP12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 EFCC1Q9HA90 598 aa12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 GPCPD1Q9NPB8 672 aa12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 COL5A2P05997 1499 aaPredicted RBP12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CCDC194A0A1B0GVG4 234 aa12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 FAM193AP78312 1265 aa12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 GPKOWQ92917 476 aaPredicted RBP eCLIP12.23□□□□□ -0.454e-8■■■■□ 19.5
MSH5-SAPCD1-207ENST00000493662 PARP3Q9Y6F1 533 aa12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 FAM196BA6NMK8 535 aa12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ERVV-1B6SEH8 477 aa12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 NAA30Q147X3 362 aaPredicted RBP12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 KRT27Q7Z3Y8 459 aa12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 NEDD4P46934 1319 aa12.23□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CDC25AP30304 524 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 TXNRD3Q86VQ6 643 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 RASGRP4Q8TDF6 673 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 GJD4Q96KN9 370 aaPredicted RBP12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 STRBPQ96SI9 672 aaKnown RBP12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CNNM2Q9H8M5 875 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 TRPC5Q9UL62 973 aaPredicted RBP12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 FAM170AA1A519 330 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 VWA3AA6NCI4 1184 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CASP7P55210 303 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ZNF827Q17R98 1081 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 TMC6Q7Z403 805 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 FAM107BQ9H098 131 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ERCC6LQ2NKX8 1250 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 APOA5Q6Q788 366 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 PIK3AP1Q6ZUJ8 805 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ZNF654Q8IZM8 581 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ANKRD20A12PQ8NF67 263 aa12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 HOOK1Q9UJC3 728 aaKnown RBP12.22□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CASQ1P31415 396 aa12.21□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 MECOMQ03112 1051 aa12.21□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 NKX1-1Q15270 411 aaPredicted RBP12.21□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 DPP8Q6V1X1 898 aaPredicted RBP12.21□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 DHX37Q8IY37 1157 aaKnown RBP12.21□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 WASF1Q92558 559 aa12.21□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 MXD3Q9BW11 206 aa12.21□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 VPS18Q9P253 973 aa12.21□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 SEC63Q9UGP8 760 aaKnown RBP12.21□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CTDP1Q9Y5B0 961 aaPredicted RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms