RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 DCP1AQ9NPI6 582 aaPredicted RBP24.49■■□□□ 1.51
CCDC88B-208ENST00000492980 AP5Z1O43299 807 aa24.49■■□□□ 1.51
CCDC88B-208ENST00000492980 KINO60870 393 aaKnown RBP24.49■■□□□ 1.51
CCDC88B-208ENST00000492980 U2AF2P26368 475 aaKnown RBP eCLIP24.49■■□□□ 1.51
CCDC88B-208ENST00000492980 FANCBQ8NB91 859 aa24.49■■□□□ 1.51
CCDC88B-208ENST00000492980 ZSCAN10Q96SZ4 725 aaPredicted RBP24.49■■□□□ 1.51
CCDC88B-208ENST00000492980 CCDC196A0A1B0GTZ2 297 aa24.48■■□□□ 1.51
CCDC88B-208ENST00000492980 SERPINB2P05120 415 aa24.48■■□□□ 1.51
CCDC88B-208ENST00000492980 FMR1NBQ8N0W7 255 aaPredicted RBP24.48■■□□□ 1.51
CCDC88B-208ENST00000492980 ENAHQ8N8S7 591 aaPredicted RBP24.48■■□□□ 1.51
CCDC88B-208ENST00000492980 TDRD7Q8NHU6 1098 aaKnown RBP24.48■■□□□ 1.51
CCDC88B-208ENST00000492980 CBX8Q9HC52 389 aa24.48■■□□□ 1.51
CCDC88B-208ENST00000492980 ZKSCAN5Q9Y2L8 839 aa24.48■■□□□ 1.51
CCDC88B-208ENST00000492980 GUCY1A2P33402 732 aa24.47■■□□□ 1.51
CCDC88B-208ENST00000492980 ST5P78524 1137 aa24.47■■□□□ 1.51
CCDC88B-208ENST00000492980 KRT27Q7Z3Y8 459 aa24.47■■□□□ 1.51
CCDC88B-208ENST00000492980 DZIP1Q86YF9 867 aaKnown RBP24.47■■□□□ 1.51
CCDC88B-208ENST00000492980 TRIM22Q8IYM9 498 aa24.47■■□□□ 1.51
CCDC88B-208ENST00000492980 NUP133Q8WUM0 1156 aa24.47■■□□□ 1.51
CCDC88B-208ENST00000492980 ATP8A2Q9NTI2 1148 aa24.47■■□□□ 1.51
CCDC88B-208ENST00000492980 TAOK2Q9UL54 1235 aa24.47■■□□□ 1.51
CCDC88B-208ENST00000492980 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.47■■□□□ 1.51
CCDC88B-208ENST00000492980 PRDM1O75626 825 aa24.47■■□□□ 1.51
CCDC88B-208ENST00000492980 PTMAP06454 111 aaKnown RBP24.47■■□□□ 1.51
CCDC88B-208ENST00000492980 EVX2Q03828 476 aa24.47■■□□□ 1.51
CCDC88B-208ENST00000492980 C15orf52Q6ZUT6 534 aaKnown RBP24.47■■□□□ 1.51
CCDC88B-208ENST00000492980 CRACR2BQ8N4Y2 399 aaPredicted RBP24.47■■□□□ 1.51
CCDC88B-208ENST00000492980 TRIM37O94972 964 aa24.46■■□□□ 1.51
CCDC88B-208ENST00000492980 GNL2Q13823 731 aaKnown RBP24.46■■□□□ 1.51
CCDC88B-208ENST00000492980 LUZP1Q86V48 1076 aa24.46■■□□□ 1.51
CCDC88B-208ENST00000492980 WDR66Q8TBY9 1149 aa24.46■■□□□ 1.51
CCDC88B-208ENST00000492980 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.46■■□□□ 1.51
CCDC88B-208ENST00000492980 GPSM2P81274 684 aa24.46■■□□□ 1.51
CCDC88B-208ENST00000492980 SLC39A14Q15043 492 aa24.46■■□□□ 1.51
CCDC88B-208ENST00000492980 A0A1B0GVL5 298 aa24.45■■□□□ 1.5
CCDC88B-208ENST00000492980 ORC4O43929 436 aa24.45■■□□□ 1.5
CCDC88B-208ENST00000492980 IGSF3O75054 1194 aa24.45■■□□□ 1.5
CCDC88B-208ENST00000492980 AXDND1Q5T1B0 1012 aaPredicted RBP24.45■■□□□ 1.5
CCDC88B-208ENST00000492980 ZNF804AQ7Z570 1209 aa24.45■■□□□ 1.5
CCDC88B-208ENST00000492980 CMTR1Q8N1G2 835 aaKnown RBP24.45■■□□□ 1.5
CCDC88B-208ENST00000492980 GPR101Q96P66 508 aaPredicted RBP24.45■■□□□ 1.5
CCDC88B-208ENST00000492980 ARPP21Q9UBL0 812 aaPredicted RBP24.45■■□□□ 1.5
CCDC88B-208ENST00000492980 DEXIO95424 95 aa24.44■■□□□ 1.5
CCDC88B-208ENST00000492980 NDUFA8P51970 172 aa24.44■■□□□ 1.5
CCDC88B-208ENST00000492980 SBK1Q52WX2 424 aa24.44■■□□□ 1.5
CCDC88B-208ENST00000492980 DNAJC25Q9H1X3 360 aa24.44■■□□□ 1.5
CCDC88B-208ENST00000492980 MMP1P03956 469 aa24.44■■□□□ 1.5
CCDC88B-208ENST00000492980 LDHBP07195 334 aaKnown RBP24.44■■□□□ 1.5
CCDC88B-208ENST00000492980 DDR1Q08345 913 aa24.44■■□□□ 1.5
CCDC88B-208ENST00000492980 PPP2R5BQ15173 497 aa24.44■■□□□ 1.5
CCDC88B-208ENST00000492980 IQCA1Q86XH1 822 aa24.44■■□□□ 1.5
CCDC88B-208ENST00000492980 RBM17Q96I25 401 aaKnown RBP24.44■■□□□ 1.5
CCDC88B-208ENST00000492980 MYH6P13533 1939 aa24.44■■□□□ 1.5
CCDC88B-208ENST00000492980 CYP2D6P10635 497 aa24.43■■□□□ 1.5
CCDC88B-208ENST00000492980 PLCB2Q00722 1185 aa24.43■■□□□ 1.5
CCDC88B-208ENST00000492980 IFIT1BQ5T764 474 aaKnown RBP24.43■■□□□ 1.5
CCDC88B-208ENST00000492980 CCDC82Q8N4S0 544 aa24.43■■□□□ 1.5
CCDC88B-208ENST00000492980 MAP3K14Q99558 947 aa24.43■■□□□ 1.5
CCDC88B-208ENST00000492980 CAVIN2O95810 425 aa24.43■■□□□ 1.5
CCDC88B-208ENST00000492980 PTPAQ15257 358 aa24.43■■□□□ 1.5
CCDC88B-208ENST00000492980 EP400Q96L91 3159 aa24.42■■□□□ 1.5
CCDC88B-208ENST00000492980 WDHD1O75717 1129 aaPredicted RBP24.42■■□□□ 1.5
CCDC88B-208ENST00000492980 ZNF165P49910 485 aa24.42■■□□□ 1.5
CCDC88B-208ENST00000492980 ZNF500O60304 480 aaPredicted RBP24.41■■□□□ 1.5
CCDC88B-208ENST00000492980 PPP6R2O75170 966 aa24.41■■□□□ 1.5
CCDC88B-208ENST00000492980 GRIK5Q16478 980 aa24.41■■□□□ 1.5
CCDC88B-208ENST00000492980 STX1AQ16623 288 aa24.41■■□□□ 1.5
CCDC88B-208ENST00000492980 CATIPQ7Z7H3 387 aa24.41■■□□□ 1.5
CCDC88B-208ENST00000492980 NOSTRINQ8IVI9 506 aa24.41■■□□□ 1.5
CCDC88B-208ENST00000492980 KCNJ14Q9UNX9 436 aa24.41■■□□□ 1.5
CCDC88B-208ENST00000492980 POLRMTO00411 1230 aaKnown RBP24.41■■□□□ 1.5
CCDC88B-208ENST00000492980 UFL1O94874 794 aa24.41■■□□□ 1.5
CCDC88B-208ENST00000492980 SLC3A2P08195 630 aaKnown RBP24.41■■□□□ 1.5
CCDC88B-208ENST00000492980 ATP2B4P23634 1241 aa24.41■■□□□ 1.5
CCDC88B-208ENST00000492980 CMA1P23946 247 aa24.41■■□□□ 1.5
CCDC88B-208ENST00000492980 RNF26Q9BY78 433 aaPredicted RBP24.41■■□□□ 1.5
CCDC88B-208ENST00000492980 MROH7-TTC4A0A0A0MT08 1334 aa24.4■■□□□ 1.5
CCDC88B-208ENST00000492980 MARCKSP29966 332 aaPredicted RBP24.4■■□□□ 1.5
CCDC88B-208ENST00000492980 SAFBQ15424 915 aaKnown RBP eCLIP24.4■■□□□ 1.5
CCDC88B-208ENST00000492980 DIS3L2Q8IYB7 885 aaKnown RBP24.4■■□□□ 1.5
CCDC88B-208ENST00000492980 PROM2Q8N271 834 aa24.4■■□□□ 1.5
CCDC88B-208ENST00000492980 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP24.4■■□□□ 1.5
CCDC88B-208ENST00000492980 BTBD18B2RXH4 712 aa24.4■■□□□ 1.5
CCDC88B-208ENST00000492980 HOXA10P31260 410 aaPredicted RBP24.4■■□□□ 1.5
CCDC88B-208ENST00000492980 GSTO1P78417 241 aa24.4■■□□□ 1.5
CCDC88B-208ENST00000492980 TROAPQ12815 778 aa24.4■■□□□ 1.5
CCDC88B-208ENST00000492980 MKRN1Q9UHC7 482 aaKnown RBP24.4■■□□□ 1.5
CCDC88B-208ENST00000492980 FUT2Q10981 343 aa24.39■■□□□ 1.49
CCDC88B-208ENST00000492980 TXNRD1Q16881 649 aa24.39■■□□□ 1.49
CCDC88B-208ENST00000492980 C11orf57Q6ZUT1 292 aaPredicted RBP24.39■■□□□ 1.49
CCDC88B-208ENST00000492980 FOXP1Q9H334 677 aaPredicted RBP24.39■■□□□ 1.49
CCDC88B-208ENST00000492980 MCM9Q9NXL9 1143 aa24.39■■□□□ 1.49
CCDC88B-208ENST00000492980 GGA1Q9UJY5 639 aa24.39■■□□□ 1.49
CCDC88B-208ENST00000492980 LRRC37AA6NMS7 1700 aa24.39■■□□□ 1.49
CCDC88B-208ENST00000492980 BBOX1O75936 387 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 DDAH1O94760 285 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 USP17L8P0C7I0 530 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 CALM1P0DP23 149 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 CALM2P0DP24 149 aa24.38■■□□□ 1.49
CCDC88B-208ENST00000492980 CALM3P0DP25 149 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms