RNA–Protein interactions for RNA: ENST00000492170.1

MRPL55-231, Transcript of mitochondrial ribosomal protein L55, human

TSL 5

Gene MRPL55, Length 241 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-231	ENST00000492170	PLCG2	P16885	1265 aa		18.81	■□□□□ 0.6
MRPL55-231	ENST00000492170	PRKCZ	Q05513	592 aa		18.81	■□□□□ 0.6
MRPL55-231	ENST00000492170	CCDC84	Q86UT8	332 aa	Predicted RBP	18.81	■□□□□ 0.6
MRPL55-231	ENST00000492170	TBC1D2	Q9BYX2	928 aa		18.81	■□□□□ 0.6
MRPL55-231	ENST00000492170	C1orf115	Q9H7X2	142 aa		18.81	■□□□□ 0.6
MRPL55-231	ENST00000492170	SNRK	Q9NRH2	765 aa		18.81	■□□□□ 0.6
MRPL55-231	ENST00000492170	ZBED9	Q6R2W3	1325 aa		18.8	■□□□□ 0.6
MRPL55-231	ENST00000492170	PHIP	Q8WWQ0	1821 aa		18.8	■□□□□ 0.6
MRPL55-231	ENST00000492170	MTFR1	Q15390	333 aa		18.8	■□□□□ 0.6
MRPL55-231	ENST00000492170	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	18.8	■□□□□ 0.6
MRPL55-231	ENST00000492170	AATF	Q9NY61	560 aa	Known RBP eCLIP	18.8	■□□□□ 0.6
MRPL55-231	ENST00000492170	PCDH10	Q9P2E7	1040 aa		18.8	■□□□□ 0.6
MRPL55-231	ENST00000492170	BIN2	Q9UBW5	565 aa	Predicted RBP	18.8	■□□□□ 0.6
MRPL55-231	ENST00000492170	HERC5	Q9UII4	1024 aa	Known RBP	18.8	■□□□□ 0.6
MRPL55-231	ENST00000492170	PNMA3	Q9UL41	463 aa		18.8	■□□□□ 0.6
MRPL55-231	ENST00000492170	IGSF3	O75054	1194 aa		18.79	■□□□□ 0.6
MRPL55-231	ENST00000492170	UBXN2A	P68543	259 aa		18.79	■□□□□ 0.6
MRPL55-231	ENST00000492170	PROCA1	Q8NCQ7	364 aa	Predicted RBP	18.79	■□□□□ 0.6
MRPL55-231	ENST00000492170	SLAIN1	Q8ND83	568 aa		18.79	■□□□□ 0.6
MRPL55-231	ENST00000492170	NKX2-3	Q8TAU0	364 aa		18.79	■□□□□ 0.6
MRPL55-231	ENST00000492170	ZNF512B	Q96KM6	892 aa	Predicted RBP	18.79	■□□□□ 0.6
MRPL55-231	ENST00000492170	DHX36	Q9H2U1	1008 aa	Known RBP	18.79	■□□□□ 0.6
MRPL55-231	ENST00000492170	NOP58	Q9Y2X3	529 aa	Known RBP	18.79	■□□□□ 0.6
MRPL55-231	ENST00000492170	CAP2	P40123	477 aa		18.78	■□□□□ 0.6
MRPL55-231	ENST00000492170	SPP2	Q13103	211 aa		18.78	■□□□□ 0.6
MRPL55-231	ENST00000492170	ZNF280C	Q8ND82	737 aa		18.78	■□□□□ 0.6
MRPL55-231	ENST00000492170	PI4KB	Q9UBF8	816 aa		18.78	■□□□□ 0.6
MRPL55-231	ENST00000492170	USP17L5	A8MUK1	530 aa		18.77	■□□□□ 0.6
MRPL55-231	ENST00000492170	TNPO2	O14787	897 aa	Known RBP	18.77	■□□□□ 0.6
MRPL55-231	ENST00000492170	ZBTB7B	O15156	539 aa	Predicted RBP	18.77	■□□□□ 0.6
MRPL55-231	ENST00000492170	CYP2E1	P05181	493 aa	Predicted RBP	18.77	■□□□□ 0.6
MRPL55-231	ENST00000492170	RLBP1	P12271	317 aa		18.77	■□□□□ 0.6
MRPL55-231	ENST00000492170	PPP4C	P60510	307 aa		18.77	■□□□□ 0.6
MRPL55-231	ENST00000492170	PABPC4	Q13310	644 aa	Known RBP eCLIP	18.77	■□□□□ 0.6	9e-7	■■■■□ 25.1
MRPL55-231	ENST00000492170	TREML2	Q5T2D2	321 aa		18.77	■□□□□ 0.6
MRPL55-231	ENST00000492170	AS3MT	Q9HBK9	375 aa		18.77	■□□□□ 0.6
MRPL55-231	ENST00000492170	GABRQ	Q9UN88	632 aa		18.77	■□□□□ 0.6
MRPL55-231	ENST00000492170	MGAM	O43451	1857 aa		18.77	■□□□□ 0.6
MRPL55-231	ENST00000492170	CCL5	P13501	91 aa		18.76	■□□□□ 0.59
MRPL55-231	ENST00000492170	ZAP70	P43403	619 aa		18.76	■□□□□ 0.59
MRPL55-231	ENST00000492170	FAM110C	Q1W6H9	321 aa		18.76	■□□□□ 0.59
MRPL55-231	ENST00000492170	MAPKAPK5	Q8IW41	473 aa		18.76	■□□□□ 0.59
MRPL55-231	ENST00000492170	ANKRD13C	Q8N6S4	541 aa		18.76	■□□□□ 0.59
MRPL55-231	ENST00000492170	TGFBRAP1	Q8WUH2	860 aa		18.76	■□□□□ 0.59
MRPL55-231	ENST00000492170	SHISA4	Q96DD7	197 aa		18.76	■□□□□ 0.59
MRPL55-231	ENST00000492170	RNF208	Q9H0X6	261 aa		18.76	■□□□□ 0.59
MRPL55-231	ENST00000492170	DBNL	Q9UJU6	430 aa	Known RBP	18.76	■□□□□ 0.59
MRPL55-231	ENST00000492170	FLT1	P17948	1338 aa		18.75	■□□□□ 0.59
MRPL55-231	ENST00000492170	ATAD5	Q96QE3	1844 aa		18.75	■□□□□ 0.59
MRPL55-231	ENST00000492170	GJB1	P08034	283 aa		18.75	■□□□□ 0.59
MRPL55-231	ENST00000492170	GJA8	P48165	433 aa		18.75	■□□□□ 0.59
MRPL55-231	ENST00000492170	FLT3LG	P49771	235 aa		18.75	■□□□□ 0.59
MRPL55-231	ENST00000492170	HMGCS2	P54868	508 aa		18.75	■□□□□ 0.59
MRPL55-231	ENST00000492170	RRP1B	Q14684	758 aa	Known RBP	18.75	■□□□□ 0.59
MRPL55-231	ENST00000492170	HABP4	Q5JVS0	413 aa	Known RBP	18.75	■□□□□ 0.59
MRPL55-231	ENST00000492170	ADGRA1	Q86SQ6	560 aa		18.75	■□□□□ 0.59
MRPL55-231	ENST00000492170	TRIM34	Q9BYJ4	488 aa		18.75	■□□□□ 0.59
MRPL55-231	ENST00000492170	PIH1D3	Q9NQM4	214 aa	Known RBP	18.75	■□□□□ 0.59
MRPL55-231	ENST00000492170	LOC285556	D6RIA3	1793 aa		18.75	■□□□□ 0.59
MRPL55-231	ENST00000492170	ADCY3	O60266	1144 aa		18.74	■□□□□ 0.59
MRPL55-231	ENST00000492170	ASNS	P08243	561 aa		18.74	■□□□□ 0.59
MRPL55-231	ENST00000492170	GCLC	P48506	637 aa	Predicted RBP	18.74	■□□□□ 0.59
MRPL55-231	ENST00000492170	IRF5	Q13568	498 aa		18.74	■□□□□ 0.59
MRPL55-231	ENST00000492170	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	18.74	■□□□□ 0.59
MRPL55-231	ENST00000492170	COA7	Q96BR5	231 aa		18.74	■□□□□ 0.59
MRPL55-231	ENST00000492170	CCDC8	Q9H0W5	538 aa	Predicted RBP	18.74	■□□□□ 0.59
MRPL55-231	ENST00000492170	TLR7	Q9NYK1	1049 aa	Known RBP	18.74	■□□□□ 0.59
MRPL55-231	ENST00000492170	HLA-DOA	P06340	250 aa		18.73	■□□□□ 0.59
MRPL55-231	ENST00000492170	SH3D19	Q5HYK7	790 aa		18.73	■□□□□ 0.59
MRPL55-231	ENST00000492170	CEP85	Q6P2H3	762 aa		18.73	■□□□□ 0.59
MRPL55-231	ENST00000492170	ERC1	Q8IUD2	1116 aa		18.73	■□□□□ 0.59
MRPL55-231	ENST00000492170	FOXP4	Q8IVH2	680 aa	Predicted RBP	18.73	■□□□□ 0.59
MRPL55-231	ENST00000492170	PXYLP1	Q8TE99	480 aa		18.73	■□□□□ 0.59
MRPL55-231	ENST00000492170	EAF2	Q96CJ1	260 aa	Predicted RBP	18.73	■□□□□ 0.59
MRPL55-231	ENST00000492170	IDH1	O75874	414 aa	Known RBP	18.72	■□□□□ 0.59
MRPL55-231	ENST00000492170	CYP7A1	P22680	504 aa		18.72	■□□□□ 0.59
MRPL55-231	ENST00000492170	CERS3	Q8IU89	383 aa		18.72	■□□□□ 0.59
MRPL55-231	ENST00000492170	WDR18	Q9BV38	432 aa		18.72	■□□□□ 0.59
MRPL55-231	ENST00000492170	GINM1	Q9NU53	330 aa		18.72	■□□□□ 0.59
MRPL55-231	ENST00000492170	TAOK2	Q9UL54	1235 aa		18.72	■□□□□ 0.59
MRPL55-231	ENST00000492170	SIPA1L1	O43166	1804 aa		18.72	■□□□□ 0.59
MRPL55-231	ENST00000492170	INHA	P05111	366 aa		18.71	■□□□□ 0.59
MRPL55-231	ENST00000492170	ELN	P15502	786 aa		18.71	■□□□□ 0.59
MRPL55-231	ENST00000492170	MTMR2	Q13614	643 aa		18.71	■□□□□ 0.59
MRPL55-231	ENST00000492170	METTL16	Q86W50	562 aa	Known RBP	18.71	■□□□□ 0.59
MRPL55-231	ENST00000492170	U2AF1L4	Q8WU68	220 aa	Known RBP	18.71	■□□□□ 0.59
MRPL55-231	ENST00000492170	UNC93B1	Q9H1C4	597 aa		18.71	■□□□□ 0.59
MRPL55-231	ENST00000492170	ASCC2	Q9H1I8	757 aa	Predicted RBP	18.71	■□□□□ 0.59
MRPL55-231	ENST00000492170	DNAJC18	Q9H819	358 aa		18.71	■□□□□ 0.59
MRPL55-231	ENST00000492170	TMOD4	Q9NZQ9	345 aa		18.71	■□□□□ 0.59
MRPL55-231	ENST00000492170	SAP30BP	Q9UHR5	308 aa	Known RBP	18.71	■□□□□ 0.59
MRPL55-231	ENST00000492170	PALD1	Q9ULE6	856 aa		18.71	■□□□□ 0.59
MRPL55-231	ENST00000492170	FOCAD	Q5VW36	1801 aa		18.7	■□□□□ 0.58
MRPL55-231	ENST00000492170	BACE1	P56817	501 aa		18.7	■□□□□ 0.58
MRPL55-231	ENST00000492170	DYNLL1	P63167	89 aa	Known RBP	18.7	■□□□□ 0.58
MRPL55-231	ENST00000492170	IRX3	P78415	501 aa	Predicted RBP	18.7	■□□□□ 0.58
MRPL55-231	ENST00000492170	AACS	Q86V21	672 aa		18.7	■□□□□ 0.58
MRPL55-231	ENST00000492170	HTATIP2	Q9BUP3	242 aa		18.7	■□□□□ 0.58
MRPL55-231	ENST00000492170	EXOC6B	Q9Y2D4	811 aa		18.7	■□□□□ 0.58
MRPL55-231	ENST00000492170	CDK5RAP2	Q96SN8	1893 aa		18.69	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms