RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 NECAB1Q8N987 351 aa25.48■■□□□ 1.67
SMC4-221ENST00000489573 IDI2Q9BXS1 227 aa25.48■■□□□ 1.67
SMC4-221ENST00000489573 OSBPL5Q9H0X9 879 aaPredicted RBP25.48■■□□□ 1.67
SMC4-221ENST00000489573 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.48■■□□□ 1.67
SMC4-221ENST00000489573 MYH1P12882 1939 aa25.48■■□□□ 1.67
SMC4-221ENST00000489573 LMNB1P20700 586 aa25.48■■□□□ 1.67
SMC4-221ENST00000489573 PLCD1P51178 756 aa25.48■■□□□ 1.67
SMC4-221ENST00000489573 SART3Q15020 963 aaKnown RBP25.48■■□□□ 1.67
SMC4-221ENST00000489573 TMEM67Q5HYA8 995 aa25.48■■□□□ 1.67
SMC4-221ENST00000489573 IGDCC4Q8TDY8 1250 aa25.48■■□□□ 1.67
SMC4-221ENST00000489573 ZNF274Q96GC6 653 aaPredicted RBP25.48■■□□□ 1.67
SMC4-221ENST00000489573 SPDYE2BA6NHP3 402 aa25.47■■□□□ 1.67
SMC4-221ENST00000489573 IFIT3O14879 490 aaKnown RBP25.47■■□□□ 1.67
SMC4-221ENST00000489573 RANBP6O60518 1105 aaKnown RBP25.47■■□□□ 1.67
SMC4-221ENST00000489573 SPDYE6P0CI01 402 aa25.47■■□□□ 1.67
SMC4-221ENST00000489573 NFIAQ12857 509 aa25.47■■□□□ 1.67
SMC4-221ENST00000489573 STK3Q13188 491 aa25.47■■□□□ 1.67
SMC4-221ENST00000489573 DLGAP5Q15398 846 aa25.47■■□□□ 1.67
SMC4-221ENST00000489573 DYNLL2Q96FJ2 89 aa25.47■■□□□ 1.67
SMC4-221ENST00000489573 PFKFB2O60825 505 aa25.46■■□□□ 1.67
SMC4-221ENST00000489573 NPM3O75607 178 aaKnown RBP25.46■■□□□ 1.67
SMC4-221ENST00000489573 MMP14P50281 582 aa25.46■■□□□ 1.67
SMC4-221ENST00000489573 TTC6Q86TZ1 520 aa25.46■■□□□ 1.67
SMC4-221ENST00000489573 GTF3C6Q969F1 213 aa25.46■■□□□ 1.67
SMC4-221ENST00000489573 PRMT6Q96LA8 375 aaPredicted RBP25.46■■□□□ 1.67
SMC4-221ENST00000489573 UBAC1Q9BSL1 405 aa25.46■■□□□ 1.67
SMC4-221ENST00000489573 TDRD3Q9H7E2 651 aaKnown RBP25.46■■□□□ 1.67
SMC4-221ENST00000489573 KLF18A0A0U1RQI7 1052 aa25.45■■□□□ 1.66
SMC4-221ENST00000489573 ERICH2A1L162 156 aa25.45■■□□□ 1.66
SMC4-221ENST00000489573 LIFRP42702 1097 aa25.45■■□□□ 1.66
SMC4-221ENST00000489573 C16orf86Q6ZW13 317 aa25.45■■□□□ 1.66
SMC4-221ENST00000489573 MTMR14Q8NCE2 650 aa25.45■■□□□ 1.66
SMC4-221ENST00000489573 LY9Q9HBG7 655 aa25.45■■□□□ 1.66
SMC4-221ENST00000489573 ZNF287Q9HBT7 754 aa25.45■■□□□ 1.66
SMC4-221ENST00000489573 NAP1L2Q9ULW6 460 aaPredicted RBP25.45■■□□□ 1.66
SMC4-221ENST00000489573 CACNB3P54284 484 aa25.44■■□□□ 1.66
SMC4-221ENST00000489573 TMOD2Q9NZR1 351 aa25.44■■□□□ 1.66
SMC4-221ENST00000489573 BRPF3Q9ULD4 1205 aa25.44■■□□□ 1.66
SMC4-221ENST00000489573 YBX3P16989 372 aaKnown RBP eCLIP25.44■■□□□ 1.66
SMC4-221ENST00000489573 PDIA3P30101 505 aaKnown RBP25.44■■□□□ 1.66
SMC4-221ENST00000489573 SGMS1Q86VZ5 419 aa25.44■■□□□ 1.66
SMC4-221ENST00000489573 IQCA1Q86XH1 822 aa25.44■■□□□ 1.66
SMC4-221ENST00000489573 ZKSCAN3Q9BRR0 538 aa25.44■■□□□ 1.66
SMC4-221ENST00000489573 MKNK2Q9HBH9 465 aa25.44■■□□□ 1.66
SMC4-221ENST00000489573 FAM198AQ9UFP1 575 aa25.44■■□□□ 1.66
SMC4-221ENST00000489573 ZNF541Q9H0D2 1346 aa25.43■■□□□ 1.66
SMC4-221ENST00000489573 WTAPQ15007 396 aa25.43■■□□□ 1.66
SMC4-221ENST00000489573 SMC3Q9UQE7 1217 aa25.43■■□□□ 1.66
SMC4-221ENST00000489573 GOLGA8BA8MQT2 603 aa25.42■■□□□ 1.66
SMC4-221ENST00000489573 HLA-DOAP06340 250 aa25.42■■□□□ 1.66
SMC4-221ENST00000489573 GMPSP49915 693 aaPredicted RBP25.42■■□□□ 1.66
SMC4-221ENST00000489573 ZNF280AP59817 542 aaPredicted RBP25.42■■□□□ 1.66
SMC4-221ENST00000489573 SCRN1Q12765 414 aa25.42■■□□□ 1.66
SMC4-221ENST00000489573 NFXL1Q6ZNB6 911 aa25.42■■□□□ 1.66
SMC4-221ENST00000489573 SLC44A5Q8NCS7 719 aa25.42■■□□□ 1.66
SMC4-221ENST00000489573 DPF2Q92785 391 aa25.42■■□□□ 1.66
SMC4-221ENST00000489573 ZSCAN10Q96SZ4 725 aaPredicted RBP25.42■■□□□ 1.66
SMC4-221ENST00000489573 GJA3Q9Y6H8 435 aa25.42■■□□□ 1.66
SMC4-221ENST00000489573 TNKSO95271 1327 aa25.42■■□□□ 1.66
SMC4-221ENST00000489573 DICER1Q9UPY3 1922 aaKnown RBP25.41■■□□□ 1.66
SMC4-221ENST00000489573 TSPY2A6NKD2 308 aa25.41■■□□□ 1.66
SMC4-221ENST00000489573 ENTPD3O75355 529 aa25.41■■□□□ 1.66
SMC4-221ENST00000489573 CDK8P49336 464 aa25.41■■□□□ 1.66
SMC4-221ENST00000489573 TMTC2Q8N394 836 aa25.41■■□□□ 1.66
SMC4-221ENST00000489573 CHMP4CQ96CF2 233 aa25.41■■□□□ 1.66
SMC4-221ENST00000489573 ZBED3Q96IU2 234 aaPredicted RBP25.41■■□□□ 1.66
SMC4-221ENST00000489573 DHX36Q9H2U1 1008 aaKnown RBP25.41■■□□□ 1.66
SMC4-221ENST00000489573 SENP2Q9HC62 589 aa25.41■■□□□ 1.66
SMC4-221ENST00000489573 GOLGB1Q14789 3259 aaKnown RBP25.4■■□□□ 1.66
SMC4-221ENST00000489573 CCDC69A6NI79 296 aa25.4■■□□□ 1.66
SMC4-221ENST00000489573 TCP10Q12799 353 aa25.4■■□□□ 1.66
SMC4-221ENST00000489573 SEC23AQ15436 765 aa25.4■■□□□ 1.66
SMC4-221ENST00000489573 SPDYE2Q495Y8 402 aa25.4■■□□□ 1.66
SMC4-221ENST00000489573 FAM47AQ5JRC9 791 aa25.4■■□□□ 1.66
SMC4-221ENST00000489573 MYOZ2Q9NPC6 264 aa25.4■■□□□ 1.66
SMC4-221ENST00000489573 ZNF70Q9UC06 446 aaPredicted RBP25.4■■□□□ 1.66
SMC4-221ENST00000489573 RASA1P20936 1047 aa25.39■■□□□ 1.66
SMC4-221ENST00000489573 GABPAQ06546 454 aa25.39■■□□□ 1.66
SMC4-221ENST00000489573 APOA5Q6Q788 366 aa25.39■■□□□ 1.66
SMC4-221ENST00000489573 ZFPM1Q8IX07 1006 aa25.39■■□□□ 1.66
SMC4-221ENST00000489573 ZNF444Q8N0Y2 327 aaPredicted RBP25.39■■□□□ 1.66
SMC4-221ENST00000489573 EHD4Q9H223 541 aa25.39■■□□□ 1.66
SMC4-221ENST00000489573 SERPINB13Q9UIV8 391 aa25.39■■□□□ 1.66
SMC4-221ENST00000489573 COL2A1P02458 1487 aaPredicted RBP25.39■■□□□ 1.66
SMC4-221ENST00000489573 CCT2P78371 535 aaKnown RBP25.39■■□□□ 1.65
SMC4-221ENST00000489573 TFAP4Q01664 338 aa25.39■■□□□ 1.65
SMC4-221ENST00000489573 LLPHQ9BRT6 129 aaKnown RBP25.39■■□□□ 1.65
SMC4-221ENST00000489573 SWAP70Q9UH65 585 aa25.39■■□□□ 1.65
SMC4-221ENST00000489573 HPS5Q9UPZ3 1129 aa25.39■■□□□ 1.65
SMC4-221ENST00000489573 SBF1O95248 1867 aa25.38■■□□□ 1.65
SMC4-221ENST00000489573 SHTN1A0MZ66 631 aa25.38■■□□□ 1.65
SMC4-221ENST00000489573 CLRN2A0PK11 232 aa25.38■■□□□ 1.65
SMC4-221ENST00000489573 MYO1BO43795 1136 aa25.38■■□□□ 1.65
SMC4-221ENST00000489573 NUCB2P80303 420 aa25.38■■□□□ 1.65
SMC4-221ENST00000489573 MICALL2Q8IY33 904 aa25.38■■□□□ 1.65
SMC4-221ENST00000489573 ENAHQ8N8S7 591 aaPredicted RBP25.38■■□□□ 1.65
SMC4-221ENST00000489573 SLC12A7Q9Y666 1083 aa25.38■■□□□ 1.65
SMC4-221ENST00000489573 ATRNL1Q5VV63 1379 aa25.37■■□□□ 1.65
SMC4-221ENST00000489573 ZBTB43O43298 467 aa25.37■■□□□ 1.65
SMC4-221ENST00000489573 TSPY3P0CV98 308 aa25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms