RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 NBPF9Q3BBW0 867 aa16.71■□□□□ 0.27
CUX1-209ENST00000487284 TBC1D10BQ4KMP7 808 aaPredicted RBP16.71■□□□□ 0.27
CUX1-209ENST00000487284 MAPKAPK5Q8IW41 473 aa16.71■□□□□ 0.27
CUX1-209ENST00000487284 ANAPC4Q9UJX5 808 aa16.71■□□□□ 0.27
CUX1-209ENST00000487284 FLT1P17948 1338 aa16.7■□□□□ 0.26
CUX1-209ENST00000487284 NEDD4P46934 1319 aa16.7■□□□□ 0.26
CUX1-209ENST00000487284 CLRN2A0PK11 232 aa16.7■□□□□ 0.26
CUX1-209ENST00000487284 GLTPD2A6NH11 291 aa16.7■□□□□ 0.26
CUX1-209ENST00000487284 WNT10BO00744 389 aa16.7■□□□□ 0.26
CUX1-209ENST00000487284 EPS15P42566 896 aa16.7■□□□□ 0.26
CUX1-209ENST00000487284 NFIAQ12857 509 aa16.7■□□□□ 0.26
CUX1-209ENST00000487284 AKNAD1Q5T1N1 836 aa16.7■□□□□ 0.26
CUX1-209ENST00000487284 CHST3Q7LGC8 479 aa16.7■□□□□ 0.26
CUX1-209ENST00000487284 STAG1Q8WVM7 1258 aa16.7■□□□□ 0.26
CUX1-209ENST00000487284 ZNF274Q96GC6 653 aaPredicted RBP16.7■□□□□ 0.26
CUX1-209ENST00000487284 CNNM2Q9H8M5 875 aa16.7■□□□□ 0.26
CUX1-209ENST00000487284 MKRN1Q9UHC7 482 aaKnown RBP16.7■□□□□ 0.26
CUX1-209ENST00000487284 WDR33Q9C0J8 1336 aaKnown RBP16.69■□□□□ 0.26
CUX1-209ENST00000487284 BAG4O95429 457 aaKnown RBP16.69■□□□□ 0.26
CUX1-209ENST00000487284 GJB2P29033 226 aa16.69■□□□□ 0.26
CUX1-209ENST00000487284 CTDSPL2Q05D32 466 aa16.69■□□□□ 0.26
CUX1-209ENST00000487284 APOBRQ0VD83 1088 aa16.69■□□□□ 0.26
CUX1-209ENST00000487284 PICALMQ13492 652 aa16.69■□□□□ 0.26
CUX1-209ENST00000487284 TRPM4Q8TD43 1214 aa16.69■□□□□ 0.26
CUX1-209ENST00000487284 DDX4Q9NQI0 724 aaKnown RBP16.69■□□□□ 0.26
CUX1-209ENST00000487284 LMOD1P29536 600 aaPredicted RBP16.68■□□□□ 0.26
CUX1-209ENST00000487284 PPARAQ07869 468 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 STK3Q13188 491 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 KIF4BQ2VIQ3 1234 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 SPDYE2Q495Y8 402 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 L3MBTL3Q96JM7 780 aaPredicted RBP16.68■□□□□ 0.26
CUX1-209ENST00000487284 ZNF70Q9UC06 446 aaPredicted RBP16.68■□□□□ 0.26
CUX1-209ENST00000487284 TACC3Q9Y6A5 838 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 CYP2D7A0A087X1C5 515 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 B4E1Z4 1266 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 USP17L12C9JPN9 530 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 USP17L21D6R901 530 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 SMIM22K7EJ46 135 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 SYT1P21579 422 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 EVX2Q03828 476 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 SLC4A8Q2Y0W8 1093 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 CTR9Q6PD62 1173 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 MFSD6Q6ZSS7 791 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 CYB5R4Q7L1T6 521 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 NKX2-3Q8TAU0 364 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 TMEM87BQ96K49 555 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 LLPHQ9BRT6 129 aaKnown RBP16.68■□□□□ 0.26
CUX1-209ENST00000487284 IDI2Q9BXS1 227 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 KRT23Q9C075 422 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 RNF41Q9H4P4 317 aaPredicted RBP16.68■□□□□ 0.26
CUX1-209ENST00000487284 MCM9Q9NXL9 1143 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 FAM198AQ9UFP1 575 aa16.68■□□□□ 0.26
CUX1-209ENST00000487284 SAP30BPQ9UHR5 308 aaKnown RBP16.68■□□□□ 0.26
CUX1-209ENST00000487284 SCN4AP35499 1836 aa16.67■□□□□ 0.26
CUX1-209ENST00000487284 ASTN2O75129 1339 aaPredicted RBP16.67■□□□□ 0.26
CUX1-209ENST00000487284 WDR90Q96KV7 1748 aa16.67■□□□□ 0.26
CUX1-209ENST00000487284 MINDY4BA8MYZ0 360 aa16.67■□□□□ 0.26
CUX1-209ENST00000487284 MYO1BO43795 1136 aa16.67■□□□□ 0.26
CUX1-209ENST00000487284 CYP2D6P10635 497 aa16.67■□□□□ 0.26
CUX1-209ENST00000487284 PDIA4P13667 645 aaKnown RBP16.67■□□□□ 0.26
CUX1-209ENST00000487284 PDIA3P30101 505 aaKnown RBP16.67■□□□□ 0.26
CUX1-209ENST00000487284 SCRN1Q12765 414 aa16.67■□□□□ 0.26
CUX1-209ENST00000487284 VEZTQ9HBM0 779 aa16.67■□□□□ 0.26
CUX1-209ENST00000487284 GPHNQ9NQX3 736 aaPredicted RBP16.67■□□□□ 0.26
CUX1-209ENST00000487284 TMOD2Q9NZR1 351 aa16.67■□□□□ 0.26
CUX1-209ENST00000487284 MYH8P13535 1937 aa16.66■□□□□ 0.26
CUX1-209ENST00000487284 SH2B2O14492 632 aaPredicted RBP16.66■□□□□ 0.26
CUX1-209ENST00000487284 STX6O43752 255 aa16.66■□□□□ 0.26
CUX1-209ENST00000487284 PTMSP20962 102 aa16.66■□□□□ 0.26
CUX1-209ENST00000487284 TCP10Q12799 353 aa16.66■□□□□ 0.26
CUX1-209ENST00000487284 ZFPM1Q8IX07 1006 aa16.66■□□□□ 0.26
CUX1-209ENST00000487284 CHMP4CQ96CF2 233 aa16.66■□□□□ 0.26
CUX1-209ENST00000487284 MTA3Q9BTC8 594 aa16.66■□□□□ 0.26
CUX1-209ENST00000487284 OSBPL5Q9H0X9 879 aaPredicted RBP16.66■□□□□ 0.26
CUX1-209ENST00000487284 ADARB2Q9NS39 739 aaKnown RBP16.66■□□□□ 0.26
CUX1-209ENST00000487284 ARPP21Q9UBL0 812 aaPredicted RBP16.66■□□□□ 0.26
CUX1-209ENST00000487284 ANGEL1Q9UNK9 670 aaKnown RBP16.66■□□□□ 0.26
CUX1-209ENST00000487284 MYH6P13533 1939 aa16.65■□□□□ 0.26
CUX1-209ENST00000487284 TCP10L2B9ZVM9 353 aa16.65■□□□□ 0.26
CUX1-209ENST00000487284 ZSCAN22P10073 491 aaPredicted RBP16.65■□□□□ 0.26
CUX1-209ENST00000487284 PCP11498 1178 aaKnown RBP16.65■□□□□ 0.26
CUX1-209ENST00000487284 HIRAP54198 1017 aaPredicted RBP16.65■□□□□ 0.26
CUX1-209ENST00000487284 SBK1Q52WX2 424 aa16.65■□□□□ 0.26
CUX1-209ENST00000487284 SMARCC2Q8TAQ2 1214 aa16.65■□□□□ 0.26
CUX1-209ENST00000487284 INCENPQ9NQS7 918 aa16.65■□□□□ 0.26
CUX1-209ENST00000487284 HACL1Q9UJ83 578 aa16.65■□□□□ 0.26
CUX1-209ENST00000487284 BRPF3Q9ULD4 1205 aa16.65■□□□□ 0.26
CUX1-209ENST00000487284 SIPA1L1O43166 1804 aa16.64■□□□□ 0.26
CUX1-209ENST00000487284 KDM4AO75164 1064 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 NPM3O75607 178 aaKnown RBP16.64■□□□□ 0.25
CUX1-209ENST00000487284 FGRP09769 529 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 PDCP20941 246 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 C12orf60Q5U649 245 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 STK11IPQ8N1F8 1099 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 IGDCC4Q8TDY8 1250 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 ZSWIM5Q9P217 1185 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 CNTNAP1P78357 1384 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 KLF18A0A0U1RQI7 1052 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 POTECB2RU33 542 aa16.64■□□□□ 0.25
CUX1-209ENST00000487284 GOLGA6L22H0YM25 854 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms