RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 SMIM22K7EJ46 135 aa21■□□□□ 0.95
SMARCD3-212ENST00000485610 PDE4BQ07343 736 aa21■□□□□ 0.95
SMARCD3-212ENST00000485610 TRDNQ13061 729 aa21■□□□□ 0.95
SMARCD3-212ENST00000485610 RASA3Q14644 834 aa21■□□□□ 0.95
SMARCD3-212ENST00000485610 RALYLQ86SE5 291 aaKnown RBP21■□□□□ 0.95
SMARCD3-212ENST00000485610 ZC3H15Q8WU90 426 aaKnown RBP21■□□□□ 0.95
SMARCD3-212ENST00000485610 TMEM39BQ9GZU3 492 aa21■□□□□ 0.95
SMARCD3-212ENST00000485610 PI4KBQ9UBF8 816 aa21■□□□□ 0.95
SMARCD3-212ENST00000485610 SERPINB13Q9UIV8 391 aa21■□□□□ 0.95
SMARCD3-212ENST00000485610 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21■□□□□ 0.95
SMARCD3-212ENST00000485610 NEDD4P46934 1319 aa20.99■□□□□ 0.95
SMARCD3-212ENST00000485610 CASTP20810 708 aaKnown RBP20.99■□□□□ 0.95
SMARCD3-212ENST00000485610 C16orf86Q6ZW13 317 aa20.99■□□□□ 0.95
SMARCD3-212ENST00000485610 NCOA7Q8NI08 942 aa20.99■□□□□ 0.95
SMARCD3-212ENST00000485610 NEK1Q96PY6 1258 aa20.99■□□□□ 0.95
SMARCD3-212ENST00000485610 CSRNP1Q96S65 589 aa20.99■□□□□ 0.95
SMARCD3-212ENST00000485610 KRT23Q9C075 422 aa20.99■□□□□ 0.95
SMARCD3-212ENST00000485610 ZNF287Q9HBT7 754 aa20.99■□□□□ 0.95
SMARCD3-212ENST00000485610 PPP2R3BQ9Y5P8 575 aa20.99■□□□□ 0.95
SMARCD3-212ENST00000485610 ATAD5Q96QE3 1844 aa20.98■□□□□ 0.95
SMARCD3-212ENST00000485610 ORC4O43929 436 aa20.98■□□□□ 0.95
SMARCD3-212ENST00000485610 HMGB1P09429 215 aaKnown RBP20.98■□□□□ 0.95
SMARCD3-212ENST00000485610 FGRP09769 529 aa20.98■□□□□ 0.95
SMARCD3-212ENST00000485610 VEGFAP15692 232 aaPredicted RBP20.98■□□□□ 0.95
SMARCD3-212ENST00000485610 GABPAQ06546 454 aa20.98■□□□□ 0.95
SMARCD3-212ENST00000485610 EAPPQ56P03 285 aaPredicted RBP20.98■□□□□ 0.95
SMARCD3-212ENST00000485610 BLOC1S2Q6QNY1 142 aa20.98■□□□□ 0.95
SMARCD3-212ENST00000485610 STK11IPQ8N1F8 1099 aa20.98■□□□□ 0.95
SMARCD3-212ENST00000485610 DYNLL2Q96FJ2 89 aa20.98■□□□□ 0.95
SMARCD3-212ENST00000485610 DEFB129Q9H1M3 183 aa20.98■□□□□ 0.95
SMARCD3-212ENST00000485610 TACC3Q9Y6A5 838 aa20.98■□□□□ 0.95
SMARCD3-212ENST00000485610 GREB1LQ9C091 1923 aaPredicted RBP20.98■□□□□ 0.95
SMARCD3-212ENST00000485610 NT5C2P49902 561 aa20.97■□□□□ 0.95
SMARCD3-212ENST00000485610 DCPSQ96C86 337 aaKnown RBP20.97■□□□□ 0.95
SMARCD3-212ENST00000485610 ZSWIM6Q9HCJ5 1215 aa20.97■□□□□ 0.95
SMARCD3-212ENST00000485610 TOMM22Q9NS69 142 aa20.97■□□□□ 0.95
SMARCD3-212ENST00000485610 SWAP70Q9UH65 585 aa20.97■□□□□ 0.95
SMARCD3-212ENST00000485610 FOXP4Q8IVH2 680 aaPredicted RBP20.96■□□□□ 0.95
SMARCD3-212ENST00000485610 MB21D2Q8IYB1 491 aaPredicted RBP20.96■□□□□ 0.95
SMARCD3-212ENST00000485610 CRACR2BQ8N4Y2 399 aaPredicted RBP20.96■□□□□ 0.95
SMARCD3-212ENST00000485610 SLC44A5Q8NCS7 719 aa20.96■□□□□ 0.95
SMARCD3-212ENST00000485610 IL27Q8NEV9 243 aa20.96■□□□□ 0.95
SMARCD3-212ENST00000485610 TRIM34Q9BYJ4 488 aa20.96■□□□□ 0.95
SMARCD3-212ENST00000485610 UPF3BQ9BZI7 483 aaKnown RBP20.96■□□□□ 0.95
SMARCD3-212ENST00000485610 RRAGCQ9HB90 399 aa20.96■□□□□ 0.95
SMARCD3-212ENST00000485610 PGAP2Q9UHJ9 254 aa20.96■□□□□ 0.95
SMARCD3-212ENST00000485610 SCAF8Q9UPN6 1271 aaKnown RBP20.96■□□□□ 0.95
SMARCD3-212ENST00000485610 CYP46A1Q9Y6A2 500 aa20.96■□□□□ 0.95
SMARCD3-212ENST00000485610 B4E1Z4 1266 aa20.95■□□□□ 0.94
SMARCD3-212ENST00000485610 CDK8P49336 464 aa20.95■□□□□ 0.94
SMARCD3-212ENST00000485610 RRP12Q5JTH9 1297 aaKnown RBP20.95■□□□□ 0.94
SMARCD3-212ENST00000485610 RUFY3Q7L099 469 aa20.95■□□□□ 0.94
SMARCD3-212ENST00000485610 METTL16Q86W50 562 aaKnown RBP20.95■□□□□ 0.94
SMARCD3-212ENST00000485610 SULF1Q8IWU6 871 aa20.95■□□□□ 0.94
SMARCD3-212ENST00000485610 ESR2Q92731 530 aa20.95■□□□□ 0.94
SMARCD3-212ENST00000485610 TEPSINQ96N21 525 aa20.95■□□□□ 0.94
SMARCD3-212ENST00000485610 MKNK2Q9HBH9 465 aa20.95■□□□□ 0.94
SMARCD3-212ENST00000485610 INCENPQ9NQS7 918 aa20.95■□□□□ 0.94
SMARCD3-212ENST00000485610 HERC5Q9UII4 1024 aaKnown RBP20.95■□□□□ 0.94
SMARCD3-212ENST00000485610 PRDM1O75626 825 aa20.94■□□□□ 0.94
SMARCD3-212ENST00000485610 RPS6KB1P23443 525 aa20.94■□□□□ 0.94
SMARCD3-212ENST00000485610 NMRK2Q9NPI5 230 aa20.94■□□□□ 0.94
SMARCD3-212ENST00000485610 WDR19Q8NEZ3 1342 aa20.94■□□□□ 0.94
SMARCD3-212ENST00000485610 KDM4AO75164 1064 aa20.94■□□□□ 0.94
SMARCD3-212ENST00000485610 CPA1P15085 419 aa20.94■□□□□ 0.94
SMARCD3-212ENST00000485610 NEK4P51957 841 aa20.94■□□□□ 0.94
SMARCD3-212ENST00000485610 DHX32Q7L7V1 743 aaKnown RBP20.94■□□□□ 0.94
SMARCD3-212ENST00000485610 CDAN1Q8IWY9 1227 aa20.94■□□□□ 0.94
SMARCD3-212ENST00000485610 ZNF526Q8TF50 670 aaPredicted RBP20.94■□□□□ 0.94
SMARCD3-212ENST00000485610 HOOK2Q96ED9 719 aa20.94■□□□□ 0.94
SMARCD3-212ENST00000485610 DNAJC18Q9H819 358 aa20.94■□□□□ 0.94
SMARCD3-212ENST00000485610 RBM19Q9Y4C8 960 aaKnown RBP20.94■□□□□ 0.94
SMARCD3-212ENST00000485610 RASA1P20936 1047 aa20.93■□□□□ 0.94
SMARCD3-212ENST00000485610 MCM5P33992 734 aa20.93■□□□□ 0.94
SMARCD3-212ENST00000485610 COL9A3Q14050 684 aaPredicted RBP20.93■□□□□ 0.94
SMARCD3-212ENST00000485610 KRT26Q7Z3Y9 468 aa20.93■□□□□ 0.94
SMARCD3-212ENST00000485610 MYH4Q9Y623 1939 aa20.93■□□□□ 0.94
SMARCD3-212ENST00000485610 DOCK1Q14185 1865 aa20.93■□□□□ 0.94
SMARCD3-212ENST00000485610 ST18O60284 1047 aa20.92■□□□□ 0.94
SMARCD3-212ENST00000485610 TBC1D12O60347 775 aa20.92■□□□□ 0.94
SMARCD3-212ENST00000485610 RANBP6O60518 1105 aaKnown RBP20.92■□□□□ 0.94
SMARCD3-212ENST00000485610 SHMT1P34896 483 aa20.92■□□□□ 0.94
SMARCD3-212ENST00000485610 PLIN4Q96Q06 1357 aa20.91■□□□□ 0.94
SMARCD3-212ENST00000485610 FAM196BA6NMK8 535 aa20.91■□□□□ 0.94
SMARCD3-212ENST00000485610 ADM5C9JUS6 153 aa20.91■□□□□ 0.94
SMARCD3-212ENST00000485610 PRC1O43663 620 aa20.91■□□□□ 0.94
SMARCD3-212ENST00000485610 ANTXR2P58335 489 aa20.91■□□□□ 0.94
SMARCD3-212ENST00000485610 LDHDQ86WU2 507 aa20.91■□□□□ 0.94
SMARCD3-212ENST00000485610 ZNF444Q8N0Y2 327 aaPredicted RBP20.91■□□□□ 0.94
SMARCD3-212ENST00000485610 TTC14Q96N46 770 aa20.91■□□□□ 0.94
SMARCD3-212ENST00000485610 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.91■□□□□ 0.94
SMARCD3-212ENST00000485610 PDRG1Q9NUG6 133 aa20.91■□□□□ 0.94
SMARCD3-212ENST00000485610 CLEC11AQ9Y240 323 aa20.91■□□□□ 0.94
SMARCD3-212ENST00000485610 OTOFQ9HC10 1997 aa20.91■□□□□ 0.94
SMARCD3-212ENST00000485610 SSC5DA1L4H1 1573 aa20.91■□□□□ 0.94
SMARCD3-212ENST00000485610 PAPPA2Q9BXP8 1791 aa20.91■□□□□ 0.94
SMARCD3-212ENST00000485610 TSPY2A6NKD2 308 aa20.9■□□□□ 0.94
SMARCD3-212ENST00000485610 EXOSC10Q01780 885 aaKnown RBP20.9■□□□□ 0.94
SMARCD3-212ENST00000485610 NBPF12Q5TAG4 269 aaPredicted RBP20.9■□□□□ 0.94
SMARCD3-212ENST00000485610 DCAF15Q66K64 600 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms