RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 HMG20BQ9P0W2 317 aa16.09■□□□□ 0.17
HDAC6-227ENST00000485102 ZBTB7BO15156 539 aaPredicted RBP16.08■□□□□ 0.16
HDAC6-227ENST00000485102 INHAP05111 366 aa16.08■□□□□ 0.16
HDAC6-227ENST00000485102 SLURP2P0DP57 97 aa16.08■□□□□ 0.16
HDAC6-227ENST00000485102 ARID4AP29374 1257 aaPredicted RBP16.08■□□□□ 0.16
HDAC6-227ENST00000485102 CAP2P40123 477 aa16.08■□□□□ 0.16
HDAC6-227ENST00000485102 PICALMQ13492 652 aa16.08■□□□□ 0.16
HDAC6-227ENST00000485102 SH3D19Q5HYK7 790 aa16.08■□□□□ 0.16
HDAC6-227ENST00000485102 SPATA5Q8NB90 893 aa16.08■□□□□ 0.16
HDAC6-227ENST00000485102 ZNF280CQ8ND82 737 aa16.08■□□□□ 0.16
HDAC6-227ENST00000485102 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.08■□□□□ 0.16
HDAC6-227ENST00000485102 IGSF3O75054 1194 aa16.07■□□□□ 0.16
HDAC6-227ENST00000485102 ELNP15502 786 aa16.07■□□□□ 0.16
HDAC6-227ENST00000485102 SPP2Q13103 211 aa16.07■□□□□ 0.16
HDAC6-227ENST00000485102 PABPC4Q13310 644 aaKnown RBP eCLIP16.07■□□□□ 0.16
HDAC6-227ENST00000485102 TREML2Q5T2D2 321 aa16.07■□□□□ 0.16
HDAC6-227ENST00000485102 HERC5Q9UII4 1024 aaKnown RBP16.07■□□□□ 0.16
HDAC6-227ENST00000485102 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.07■□□□□ 0.16
HDAC6-227ENST00000485102 LAMA3Q16787 3333 aa16.07■□□□□ 0.16
HDAC6-227ENST00000485102 ANKRD13CQ8N6S4 541 aa16.06■□□□□ 0.16
HDAC6-227ENST00000485102 NEUROD6Q96NK8 337 aa16.06■□□□□ 0.16
HDAC6-227ENST00000485102 GJD2Q9UKL4 321 aa16.06■□□□□ 0.16
HDAC6-227ENST00000485102 USP17L5A8MUK1 530 aa16.05■□□□□ 0.16
HDAC6-227ENST00000485102 TFRCP02786 760 aaKnown RBP16.05■□□□□ 0.16
HDAC6-227ENST00000485102 UQCRFS1P1P0C7P4 283 aa16.05■□□□□ 0.16
HDAC6-227ENST00000485102 CCDC84Q86UT8 332 aaPredicted RBP16.05■□□□□ 0.16
HDAC6-227ENST00000485102 METTL16Q86W50 562 aaKnown RBP16.05■□□□□ 0.16
HDAC6-227ENST00000485102 ANKLE1Q8NAG6 615 aa16.05■□□□□ 0.16
HDAC6-227ENST00000485102 DEFB118Q96PH6 123 aa16.05■□□□□ 0.16
HDAC6-227ENST00000485102 WDR18Q9BV38 432 aa16.05■□□□□ 0.16
HDAC6-227ENST00000485102 DHX36Q9H2U1 1008 aaKnown RBP16.05■□□□□ 0.16
HDAC6-227ENST00000485102 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.05■□□□□ 0.16
HDAC6-227ENST00000485102 PI4KBQ9UBF8 816 aa16.05■□□□□ 0.16
HDAC6-227ENST00000485102 LOC285556D6RIA3 1793 aa16.05■□□□□ 0.16
HDAC6-227ENST00000485102 IPO8O15397 1037 aaKnown RBP16.04■□□□□ 0.16
HDAC6-227ENST00000485102 HOXA7P31268 230 aaPredicted RBP16.04■□□□□ 0.16
HDAC6-227ENST00000485102 PPP4CP60510 307 aa16.04■□□□□ 0.16
HDAC6-227ENST00000485102 GORABQ5T7V8 394 aa16.04■□□□□ 0.16
HDAC6-227ENST00000485102 TBC1D9Q6ZT07 1266 aa16.04■□□□□ 0.16
HDAC6-227ENST00000485102 AS3MTQ9HBK9 375 aa16.04■□□□□ 0.16
HDAC6-227ENST00000485102 GPR108Q9NPR9 543 aa16.04■□□□□ 0.16
HDAC6-227ENST00000485102 GINM1Q9NU53 330 aa16.04■□□□□ 0.16
HDAC6-227ENST00000485102 MORF4L1Q9UBU8 362 aa16.04■□□□□ 0.16
HDAC6-227ENST00000485102 CCER2I3L3R5 266 aa16.03■□□□□ 0.16
HDAC6-227ENST00000485102 EVI5O60447 810 aa16.03■□□□□ 0.16
HDAC6-227ENST00000485102 GNAI2P04899 355 aa16.03■□□□□ 0.16
HDAC6-227ENST00000485102 MCAMP43121 646 aa16.03■□□□□ 0.16
HDAC6-227ENST00000485102 HMGCS2P54868 508 aa16.03■□□□□ 0.16
HDAC6-227ENST00000485102 G3BP1Q13283 466 aaKnown RBP eCLIP16.03■□□□□ 0.16
HDAC6-227ENST00000485102 RRP1BQ14684 758 aaKnown RBP16.03■□□□□ 0.16
HDAC6-227ENST00000485102 PI16Q6UXB8 463 aa16.03■□□□□ 0.16
HDAC6-227ENST00000485102 FOXP4Q8IVH2 680 aaPredicted RBP16.03■□□□□ 0.16
HDAC6-227ENST00000485102 TEX11Q8IYF3 940 aa16.03■□□□□ 0.16
HDAC6-227ENST00000485102 ASCC2Q9H1I8 757 aaPredicted RBP16.03■□□□□ 0.16
HDAC6-227ENST00000485102 RAI14Q9P0K7 980 aa16.03■□□□□ 0.16
HDAC6-227ENST00000485102 RPTORQ8N122 1335 aa16.02■□□□□ 0.16
HDAC6-227ENST00000485102 FAM196BA6NMK8 535 aa16.02■□□□□ 0.16
HDAC6-227ENST00000485102 BAG3O95817 575 aa16.02■□□□□ 0.16
HDAC6-227ENST00000485102 HMGCRP04035 888 aa16.02■□□□□ 0.16
HDAC6-227ENST00000485102 ASNSP08243 561 aa16.02■□□□□ 0.16
HDAC6-227ENST00000485102 PLCG2P16885 1265 aa16.02■□□□□ 0.16
HDAC6-227ENST00000485102 BACE1P56817 501 aa16.02■□□□□ 0.16
HDAC6-227ENST00000485102 NECAB2Q7Z6G3 386 aa16.02■□□□□ 0.16
HDAC6-227ENST00000485102 PAWRQ96IZ0 340 aaKnown RBP16.02■□□□□ 0.16
HDAC6-227ENST00000485102 ZNF512BQ96KM6 892 aaPredicted RBP16.02■□□□□ 0.16
HDAC6-227ENST00000485102 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.02■□□□□ 0.16
HDAC6-227ENST00000485102 LRP2BPQ9P2M1 347 aa16.02■□□□□ 0.16
HDAC6-227ENST00000485102 ATAD5Q96QE3 1844 aa16.02■□□□□ 0.16
HDAC6-227ENST00000485102 PNMA6EA0A0J9YXQ4 647 aa16.01■□□□□ 0.15
HDAC6-227ENST00000485102 C19orf81C9J6K1 198 aa16.01■□□□□ 0.15
HDAC6-227ENST00000485102 TRIM27P14373 513 aa16.01■□□□□ 0.15
HDAC6-227ENST00000485102 ATF7IPQ6VMQ6 1270 aa16.01■□□□□ 0.15
HDAC6-227ENST00000485102 XRCC5P13010 732 aaKnown RBP16■□□□□ 0.15
HDAC6-227ENST00000485102 BMP8BP34820 402 aa16■□□□□ 0.15
HDAC6-227ENST00000485102 SH3RF3Q8TEJ3 882 aaPredicted RBP16■□□□□ 0.15
HDAC6-227ENST00000485102 HMX1Q9NP08 348 aaPredicted RBP16■□□□□ 0.15
HDAC6-227ENST00000485102 POLA2Q14181 598 aa15.99■□□□□ 0.15
HDAC6-227ENST00000485102 MAP3K21Q5TCX8 1036 aa15.99■□□□□ 0.15
HDAC6-227ENST00000485102 NAA16Q6N069 864 aaPredicted RBP15.99■□□□□ 0.15
HDAC6-227ENST00000485102 GDF15Q99988 308 aa15.99■□□□□ 0.15
HDAC6-227ENST00000485102 NOL10Q9BSC4 688 aaKnown RBP15.99■□□□□ 0.15
HDAC6-227ENST00000485102 OGDHLQ9ULD0 1010 aa15.99■□□□□ 0.15
HDAC6-227ENST00000485102 ALPK3Q96L96 1907 aa15.99■□□□□ 0.15
HDAC6-227ENST00000485102 SIPA1L1O43166 1804 aa15.98■□□□□ 0.15
HDAC6-227ENST00000485102 MNX1P50219 401 aaPredicted RBP15.98■□□□□ 0.15
HDAC6-227ENST00000485102 CCDC158Q5M9N0 1113 aa15.98■□□□□ 0.15
HDAC6-227ENST00000485102 GPR153Q6NV75 609 aa15.98■□□□□ 0.15
HDAC6-227ENST00000485102 SSH3Q8TE77 659 aa15.98■□□□□ 0.15
HDAC6-227ENST00000485102 P2RX7Q99572 595 aaKnown RBP15.98■□□□□ 0.15
HDAC6-227ENST00000485102 NBPF3Q9H094 633 aa15.98■□□□□ 0.15
HDAC6-227ENST00000485102 DNAJC18Q9H819 358 aa15.98■□□□□ 0.15
HDAC6-227ENST00000485102 AATFQ9NY61 560 aaKnown RBP eCLIP15.98■□□□□ 0.15
HDAC6-227ENST00000485102 TMOD4Q9NZQ9 345 aa15.98■□□□□ 0.15
HDAC6-227ENST00000485102 TAOK2Q9UL54 1235 aa15.98■□□□□ 0.15
HDAC6-227ENST00000485102 PLXNB2O15031 1838 aa15.98■□□□□ 0.15
HDAC6-227ENST00000485102 USP17L10C9JJH3 530 aa15.97■□□□□ 0.15
HDAC6-227ENST00000485102 CYP2E1P05181 493 aaPredicted RBP15.97■□□□□ 0.15
HDAC6-227ENST00000485102 HERVK_113P62684 666 aa15.97■□□□□ 0.15
HDAC6-227ENST00000485102 IRX3P78415 501 aaPredicted RBP15.97■□□□□ 0.15
HDAC6-227ENST00000485102 MTMR2Q13614 643 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms