RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 WDR19Q8NEZ3 1342 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 ZC3H4Q9UPT8 1303 aaKnown RBP9.78□□□□□ -0.84
USP4-210ENST00000483212 CNTNAP1P78357 1384 aa9.77□□□□□ -0.84
USP4-210ENST00000483212 ATRNL1Q5VV63 1379 aa9.77□□□□□ -0.84
USP4-210ENST00000483212 ORC4O43929 436 aa9.77□□□□□ -0.85
USP4-210ENST00000483212 ENTPD3O75355 529 aa9.77□□□□□ -0.85
USP4-210ENST00000483212 DDNO94850 711 aaPredicted RBP9.77□□□□□ -0.85
USP4-210ENST00000483212 HMGB1P09429 215 aaKnown RBP9.77□□□□□ -0.85
USP4-210ENST00000483212 PCP11498 1178 aaKnown RBP9.77□□□□□ -0.85
USP4-210ENST00000483212 AK2P54819 239 aa9.77□□□□□ -0.85
USP4-210ENST00000483212 GABPAQ06546 454 aa9.77□□□□□ -0.85
USP4-210ENST00000483212 PICALMQ13492 652 aa9.77□□□□□ -0.85
USP4-210ENST00000483212 TOB2Q14106 344 aaPredicted RBP9.77□□□□□ -0.85
USP4-210ENST00000483212 NBPF9Q3BBW0 867 aa9.77□□□□□ -0.85
USP4-210ENST00000483212 FKBP1CQ5VVH2 108 aa9.77□□□□□ -0.85
USP4-210ENST00000483212 CYB5R4Q7L1T6 521 aa9.77□□□□□ -0.85
USP4-210ENST00000483212 DHX32Q7L7V1 743 aaKnown RBP9.77□□□□□ -0.85
USP4-210ENST00000483212 FBXL16Q8N461 479 aa9.77□□□□□ -0.85
USP4-210ENST00000483212 NCOA7Q8NI08 942 aa9.77□□□□□ -0.85
USP4-210ENST00000483212 DDRGK1Q96HY6 314 aa9.77□□□□□ -0.85
USP4-210ENST00000483212 TCEANC2Q96MN5 208 aa9.77□□□□□ -0.85
USP4-210ENST00000483212 IPO9Q96P70 1041 aaKnown RBP9.77□□□□□ -0.85
USP4-210ENST00000483212 PDRG1Q9NUG6 133 aa9.77□□□□□ -0.85
USP4-210ENST00000483212 PGAP2Q9UHJ9 254 aa9.77□□□□□ -0.85
USP4-210ENST00000483212 MYH1P12882 1939 aa9.76□□□□□ -0.85
USP4-210ENST00000483212 CLRN2A0PK11 232 aa9.76□□□□□ -0.85
USP4-210ENST00000483212 DDTLA6NHG4 134 aaPredicted RBP9.76□□□□□ -0.85
USP4-210ENST00000483212 B4E1Z4 1266 aa9.76□□□□□ -0.85
USP4-210ENST00000483212 ST18O60284 1047 aa9.76□□□□□ -0.85
USP4-210ENST00000483212 KIF4BQ2VIQ3 1234 aa9.76□□□□□ -0.85
USP4-210ENST00000483212 MFSD6Q6ZSS7 791 aa9.76□□□□□ -0.85
USP4-210ENST00000483212 C16orf86Q6ZW13 317 aa9.76□□□□□ -0.85
USP4-210ENST00000483212 SAMD7Q7Z3H4 446 aa9.76□□□□□ -0.85
USP4-210ENST00000483212 TRPM4Q8TD43 1214 aa9.76□□□□□ -0.85
USP4-210ENST00000483212 DYNLL2Q96FJ2 89 aa9.76□□□□□ -0.85
USP4-210ENST00000483212 L3MBTL3Q96JM7 780 aaPredicted RBP9.76□□□□□ -0.85
USP4-210ENST00000483212 RNF41Q9H4P4 317 aaPredicted RBP9.76□□□□□ -0.85
USP4-210ENST00000483212 CNNM2Q9H8M5 875 aa9.76□□□□□ -0.85
USP4-210ENST00000483212 ASTN2O75129 1339 aaPredicted RBP9.76□□□□□ -0.85
USP4-210ENST00000483212 K7ELQ4 463 aaPredicted RBP9.75□□□□□ -0.85
USP4-210ENST00000483212 PRC1O43663 620 aa9.75□□□□□ -0.85
USP4-210ENST00000483212 POLR3DP05423 398 aaPredicted RBP9.75□□□□□ -0.85
USP4-210ENST00000483212 EPS15P42566 896 aa9.75□□□□□ -0.85
USP4-210ENST00000483212 MCM2P49736 904 aa9.75□□□□□ -0.85
USP4-210ENST00000483212 NT5C2P49902 561 aa9.75□□□□□ -0.85
USP4-210ENST00000483212 HIRAP54198 1017 aaPredicted RBP9.75□□□□□ -0.85
USP4-210ENST00000483212 EVCP57679 992 aa9.75□□□□□ -0.85
USP4-210ENST00000483212 ST3GAL1Q11201 340 aa9.75□□□□□ -0.85
USP4-210ENST00000483212 SLC4A8Q2Y0W8 1093 aa9.75□□□□□ -0.85
USP4-210ENST00000483212 TBC1D10BQ4KMP7 808 aaPredicted RBP9.75□□□□□ -0.85
USP4-210ENST00000483212 TTC6Q86TZ1 520 aa9.75□□□□□ -0.85
USP4-210ENST00000483212 METTL16Q86W50 562 aaKnown RBP9.75□□□□□ -0.85
USP4-210ENST00000483212 SLC44A5Q8NCS7 719 aa9.75□□□□□ -0.85
USP4-210ENST00000483212 FAM151AQ8WW52 585 aa9.75□□□□□ -0.85
USP4-210ENST00000483212 KRT23Q9C075 422 aa9.75□□□□□ -0.85
USP4-210ENST00000483212 EHD4Q9H223 541 aa9.75□□□□□ -0.85
USP4-210ENST00000483212 DNAJC18Q9H819 358 aa9.75□□□□□ -0.85
USP4-210ENST00000483212 GPHNQ9NQX3 736 aaPredicted RBP9.75□□□□□ -0.85
USP4-210ENST00000483212 ZSWIM5Q9P217 1185 aa9.75□□□□□ -0.85
USP4-210ENST00000483212 WDR90Q96KV7 1748 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 TCP10L2B9ZVM9 353 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 H7C1D1 291 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 SH2B2O14492 632 aaPredicted RBP9.74□□□□□ -0.85
USP4-210ENST00000483212 KDM4AO75164 1064 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 PRDM1O75626 825 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 LARGE1O95461 756 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 SLURP2P0DP57 97 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 RASA1P20936 1047 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 MCM5P33992 734 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 SLC4A3P48751 1232 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 TCP10Q12799 353 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 TRDNQ13061 729 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 Q6ZUG5 572 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 CHST3Q7LGC8 479 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 RALYLQ86SE5 291 aaKnown RBP9.74□□□□□ -0.85
USP4-210ENST00000483212 FAM83AQ86UY5 434 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 HSCBQ8IWL3 235 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 STK11IPQ8N1F8 1099 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 IGDCC4Q8TDY8 1250 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 MTA3Q9BTC8 594 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 LRRC2Q9BYS8 371 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 DHX36Q9H2U1 1008 aaKnown RBP9.74□□□□□ -0.85
USP4-210ENST00000483212 TAOK2Q9UL54 1235 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 TPCN1Q9ULQ1 816 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 PLIN4Q96Q06 1357 aa9.74□□□□□ -0.85
USP4-210ENST00000483212 GLTPD2A6NH11 291 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 POTECB2RU33 542 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 SLC3A2P08195 630 aaKnown RBP9.73□□□□□ -0.85
USP4-210ENST00000483212 SHMT1P34896 483 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 CDK8P49336 464 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 PDE4BQ07343 736 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 CUL4AQ13619 759 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 BECN1Q14457 450 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 SEC23AQ15436 765 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 RBM26Q5T8P6 1007 aaKnown RBP9.73□□□□□ -0.85
USP4-210ENST00000483212 CDAN1Q8IWY9 1227 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 AMOTL1Q8IY63 956 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 ESR2Q92731 530 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 BRF1Q92994 677 aa9.73□□□□□ -0.85
USP4-210ENST00000483212 TMX3Q96JJ7 454 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms