RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 NDUFA8P51970 172 aa12.78□□□□□ -0.36
HLA-DMB-260ENST00000477537 STX1AQ16623 288 aa12.78□□□□□ -0.36
HLA-DMB-260ENST00000477537 ZNF654Q8IZM8 581 aa12.78□□□□□ -0.36
HLA-DMB-260ENST00000477537 FMR1NBQ8N0W7 255 aaPredicted RBP12.78□□□□□ -0.36
HLA-DMB-260ENST00000477537 NUP133Q8WUM0 1156 aa12.78□□□□□ -0.36
HLA-DMB-260ENST00000477537 WASF1Q92558 559 aa12.78□□□□□ -0.36
HLA-DMB-260ENST00000477537 ZNF830Q96NB3 372 aaPredicted RBP12.78□□□□□ -0.36
HLA-DMB-260ENST00000477537 DUOX1Q9NRD9 1551 aa12.78□□□□□ -0.36
HLA-DMB-260ENST00000477537 OFD1O75665 1012 aa12.78□□□□□ -0.36
HLA-DMB-260ENST00000477537 CAVIN2O95810 425 aa12.78□□□□□ -0.36
HLA-DMB-260ENST00000477537 NFIXQ14938 502 aa12.78□□□□□ -0.36
HLA-DMB-260ENST00000477537 TRIM22Q8IYM9 498 aa12.78□□□□□ -0.36
HLA-DMB-260ENST00000477537 TDRD7Q8NHU6 1098 aaKnown RBP12.78□□□□□ -0.36
HLA-DMB-260ENST00000477537 CCDC88AQ3V6T2 1871 aa12.77□□□□□ -0.36
HLA-DMB-260ENST00000477537 TNKSO95271 1327 aa12.77□□□□□ -0.36
HLA-DMB-260ENST00000477537 GUCY1A2P33402 732 aa12.77□□□□□ -0.37
HLA-DMB-260ENST00000477537 SF3B2Q13435 895 aaKnown RBP12.77□□□□□ -0.37
HLA-DMB-260ENST00000477537 SLC39A14Q15043 492 aa12.77□□□□□ -0.37
HLA-DMB-260ENST00000477537 SEC23AQ15436 765 aa12.77□□□□□ -0.37
HLA-DMB-260ENST00000477537 TXNRD3Q86VQ6 643 aa12.77□□□□□ -0.37
HLA-DMB-260ENST00000477537 CAMKK2Q96RR4 588 aa12.77□□□□□ -0.37
HLA-DMB-260ENST00000477537 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.77□□□□□ -0.37
HLA-DMB-260ENST00000477537 AATFQ9NY61 560 aaKnown RBP eCLIP12.77□□□□□ -0.37
HLA-DMB-260ENST00000477537 JAG2Q9Y219 1238 aa12.77□□□□□ -0.37
HLA-DMB-260ENST00000477537 MAST2Q6P0Q8 1798 aa12.77□□□□□ -0.37
HLA-DMB-260ENST00000477537 CCDC196A0A1B0GTZ2 297 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 U2AF2P26368 475 aaKnown RBP eCLIP12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 MARCKSP29966 332 aaPredicted RBP12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 PRDX5P30044 214 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 RCAN1P53805 252 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 KIAA2012Q0VF49 1180 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 SLC27A3Q5K4L6 730 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 AXDND1Q5T1B0 1012 aaPredicted RBP12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 CTR9Q6PD62 1173 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 C11orf57Q6ZUT1 292 aaPredicted RBP12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 CMTR1Q8N1G2 835 aaKnown RBP12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 CCDC82Q8N4S0 544 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 CNBD1Q8NA66 436 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 FANCBQ8NB91 859 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 SPC24Q8NBT2 197 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 SDF4Q9BRK5 362 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 TTC12Q9H892 705 aaPredicted RBP12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 ANKIB1Q9P2G1 1089 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 MYH6P13533 1939 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 IRS2Q9Y4H2 1338 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 USP17L12C9JPN9 530 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 USP17L21D6R901 530 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 GRAPQ13588 217 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 ZNF827Q17R98 1081 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 NBPF11Q86T75 865 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 SLC51AQ86UW1 340 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 CRACR2BQ8N4Y2 399 aaPredicted RBP12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 GRAPLQ8TC17 118 aaPredicted RBP12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 ZSCAN10Q96SZ4 725 aaPredicted RBP12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 CRNKL1Q9BZJ0 848 aaKnown RBP12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 UBR3Q6ZT12 1888 aa12.76□□□□□ -0.37
HLA-DMB-260ENST00000477537 RGPD3A6NKT7 1758 aaPredicted RBP12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 LAMB1P07942 1786 aa12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 RGPD4Q7Z3J3 1758 aa12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 PRDM1O75626 825 aa12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 WDHD1O75717 1129 aaPredicted RBP12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 DEXIO95424 95 aa12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 CMA1P23946 247 aa12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 PTPAQ15257 358 aa12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 SAFBQ15424 915 aaKnown RBP eCLIP12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 ENAHQ8N8S7 591 aaPredicted RBP12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 ERCC4Q92889 916 aaPredicted RBP12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 UPF1Q92900 1129 aaKnown RBP eCLIP12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 ANO10Q9NW15 660 aa12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 KCNJ14Q9UNX9 436 aa12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 MROH7-TTC4A0A0A0MT08 1334 aa12.75□□□□□ -0.37
HLA-DMB-260ENST00000477537 A0A087WWV3 80 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 GOLGA6L6A8MZA4 724 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 PPP6R2O75170 966 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 MMP1P03956 469 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 FGRP09769 529 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 PCP11498 1178 aaKnown RBP12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 PFKFB1P16118 471 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 BAG6P46379 1132 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 ZNF75DP51815 510 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 IQCB1Q15051 598 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 IFIT1BQ5T764 474 aaKnown RBP12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 SPTY2D1Q68D10 685 aaPredicted RBP12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 DZIP1Q86YF9 867 aaKnown RBP12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 JMYQ8N9B5 988 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 MAP3K14Q99558 947 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 TRIM5Q9C035 493 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 ANO8Q9HCE9 1232 aaPredicted RBP12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 DCP1AQ9NPI6 582 aaPredicted RBP12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 DLEC1Q9Y238 1755 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 BTBD18B2RXH4 712 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 GOLGA6L19H0YKK7 550 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 ZNF202O95125 648 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 EVX2Q03828 476 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 IQCA1Q86XH1 822 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 NOSTRINQ8IVI9 506 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 ATP8A2Q9NTI2 1148 aa12.74□□□□□ -0.37
HLA-DMB-260ENST00000477537 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms