RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SYT9Q86SS6 491 aa8.93□□□□□ -0.98
CCDC88A-213ENST00000476903 IL27Q8NEV9 243 aa8.93□□□□□ -0.98
CCDC88A-213ENST00000476903 MIS18AQ9NYP9 233 aa8.93□□□□□ -0.98
CCDC88A-213ENST00000476903 CACNA1SQ13698 1873 aa8.92□□□□□ -0.98
CCDC88A-213ENST00000476903 NUP98P52948 1817 aa8.92□□□□□ -0.98
CCDC88A-213ENST00000476903 SPDYE3A6NKU9 549 aa8.92□□□□□ -0.98
CCDC88A-213ENST00000476903 PIP4K2AP48426 406 aaPredicted RBP8.92□□□□□ -0.98
CCDC88A-213ENST00000476903 RIPK4P57078 832 aa8.92□□□□□ -0.98
CCDC88A-213ENST00000476903 WDR43Q15061 677 aaKnown RBP eCLIP8.92□□□□□ -0.98
CCDC88A-213ENST00000476903 PRRT3Q5FWE3 981 aa8.92□□□□□ -0.98
CCDC88A-213ENST00000476903 C7orf43Q8WVR3 580 aa8.92□□□□□ -0.98
CCDC88A-213ENST00000476903 SETDB2Q96T68 719 aa8.92□□□□□ -0.98
CCDC88A-213ENST00000476903 THUMPD2Q9BTF0 503 aaKnown RBP8.92□□□□□ -0.98
CCDC88A-213ENST00000476903 ZNF652Q9Y2D9 606 aa8.92□□□□□ -0.98
CCDC88A-213ENST00000476903 CCDC88AQ3V6T2 1871 aa8.91□□□□□ -0.98
CCDC88A-213ENST00000476903 COL11A2P13942 1736 aaPredicted RBP8.91□□□□□ -0.98
CCDC88A-213ENST00000476903 A6NJY4 79 aa8.91□□□□□ -0.98
CCDC88A-213ENST00000476903 NPHP1O15259 732 aa8.91□□□□□ -0.98
CCDC88A-213ENST00000476903 SIN3BO75182 1162 aa8.91□□□□□ -0.98
CCDC88A-213ENST00000476903 NID1P14543 1247 aa8.91□□□□□ -0.98
CCDC88A-213ENST00000476903 TMPOP42166 694 aaKnown RBP8.91□□□□□ -0.98
CCDC88A-213ENST00000476903 C1QTNF8P60827 252 aa8.91□□□□□ -0.98
CCDC88A-213ENST00000476903 EIF4A1P60842 406 aaKnown RBP8.91□□□□□ -0.98
CCDC88A-213ENST00000476903 CLEC4GQ6UXB4 293 aa8.91□□□□□ -0.98
CCDC88A-213ENST00000476903 C8orf86Q6ZUL3 223 aa8.91□□□□□ -0.98
CCDC88A-213ENST00000476903 C2CD5Q86YS7 1000 aa8.91□□□□□ -0.98
CCDC88A-213ENST00000476903 SERTAD1Q9UHV2 236 aa8.91□□□□□ -0.98
CCDC88A-213ENST00000476903 ARFGEF2Q9Y6D5 1785 aa8.91□□□□□ -0.98
CCDC88A-213ENST00000476903 H0YIN7 160 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 M0R082 166 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 ALBP02768 609 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 ALAS2P22557 587 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 PDE6BP35913 854 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 TXLNAP40222 546 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 ST5P78524 1137 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 CCDC146Q8IYE0 955 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 MICALL1Q8N3F8 863 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 CNBD1Q8NA66 436 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 ZNF417Q8TAU3 575 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 ZNF526Q8TF50 670 aaPredicted RBP8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 TNFRSF25Q93038 417 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 RUNDC1Q96C34 613 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 ZNF587Q96SQ5 575 aaPredicted RBP8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 BRIP1Q9BX63 1249 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 PRKRIP1Q9H875 184 aaPredicted RBP8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 BABAM1Q9NWV8 329 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 TSPYL4Q9UJ04 414 aa8.9□□□□□ -0.98
CCDC88A-213ENST00000476903 GRIK4Q16099 956 aa8.89□□□□□ -0.99
CCDC88A-213ENST00000476903 PRR5LQ6MZQ0 368 aa8.89□□□□□ -0.99
CCDC88A-213ENST00000476903 TTLL6Q8N841 843 aa8.89□□□□□ -0.99
CCDC88A-213ENST00000476903 ZDHHC1Q8WTX9 485 aa8.89□□□□□ -0.99
CCDC88A-213ENST00000476903 SLC30A3Q99726 388 aa8.89□□□□□ -0.99
CCDC88A-213ENST00000476903 FER1L6Q2WGJ9 1857 aa8.88□□□□□ -0.99
CCDC88A-213ENST00000476903 NEUROD2Q15784 382 aa8.88□□□□□ -0.99
CCDC88A-213ENST00000476903 C9orf131Q5VYM1 1079 aa8.88□□□□□ -0.99
CCDC88A-213ENST00000476903 KIF6Q6ZMV9 814 aa8.88□□□□□ -0.99
CCDC88A-213ENST00000476903 C20orf204Q6ZNR8 217 aa8.88□□□□□ -0.99
CCDC88A-213ENST00000476903 NBPF5PQ86XG9 351 aaPredicted RBP8.88□□□□□ -0.99
CCDC88A-213ENST00000476903 ZNF622Q969S3 477 aaKnown RBP eCLIP8.88□□□□□ -0.99
CCDC88A-213ENST00000476903 NIP7Q9Y221 180 aaKnown RBP eCLIP8.88□□□□□ -0.99
CCDC88A-213ENST00000476903 RRP7AQ9Y3A4 280 aaKnown RBP8.88□□□□□ -0.99
CCDC88A-213ENST00000476903 DICER1Q9UPY3 1922 aaKnown RBP8.88□□□□□ -0.99
CCDC88A-213ENST00000476903 SLX4Q8IY92 1834 aa8.87□□□□□ -0.99
CCDC88A-213ENST00000476903 MAP3K15Q6ZN16 1313 aa8.87□□□□□ -0.99
CCDC88A-213ENST00000476903 ERVV-1B6SEH8 477 aa8.87□□□□□ -0.99
CCDC88A-213ENST00000476903 H2AFB1P0C5Y9 115 aa8.87□□□□□ -0.99
CCDC88A-213ENST00000476903 H2AFB2P0C5Z0 115 aa8.87□□□□□ -0.99
CCDC88A-213ENST00000476903 PRKCSHP14314 528 aaPredicted RBP8.87□□□□□ -0.99
CCDC88A-213ENST00000476903 MYL6BP14649 208 aa8.87□□□□□ -0.99
CCDC88A-213ENST00000476903 TPRNQ4KMQ1 711 aa8.87□□□□□ -0.99
CCDC88A-213ENST00000476903 TPTE2Q6XPS3 522 aa8.87□□□□□ -0.99
CCDC88A-213ENST00000476903 NGEFQ8N5V2 710 aa8.87□□□□□ -0.99
CCDC88A-213ENST00000476903 RNF181Q9P0P0 153 aa8.87□□□□□ -0.99
CCDC88A-213ENST00000476903 PCDHGA11Q9Y5H2 935 aa8.87□□□□□ -0.99
CCDC88A-213ENST00000476903 TIAM2Q8IVF5 1701 aa8.87□□□□□ -0.99
CCDC88A-213ENST00000476903 TNRC6CQ9HCJ0 1690 aaKnown RBP8.87□□□□□ -0.99
CCDC88A-213ENST00000476903 APBB1O00213 710 aa8.86□□□□□ -0.99
CCDC88A-213ENST00000476903 SRGNP10124 158 aa8.86□□□□□ -0.99
CCDC88A-213ENST00000476903 SFSWAPQ12872 951 aaKnown RBP8.86□□□□□ -0.99
CCDC88A-213ENST00000476903 TRIM28Q13263 835 aaKnown RBP8.86□□□□□ -0.99
CCDC88A-213ENST00000476903 ADGRE1Q14246 886 aa8.86□□□□□ -0.99
CCDC88A-213ENST00000476903 HLFQ16534 295 aa8.86□□□□□ -0.99
CCDC88A-213ENST00000476903 MAP7D1Q3KQU3 841 aa8.86□□□□□ -0.99
CCDC88A-213ENST00000476903 STYK1Q6J9G0 422 aa8.86□□□□□ -0.99
CCDC88A-213ENST00000476903 PLPP7Q8NBV4 271 aa8.86□□□□□ -0.99
CCDC88A-213ENST00000476903 MASTLQ96GX5 879 aa8.86□□□□□ -0.99
CCDC88A-213ENST00000476903 NACC1Q96RE7 527 aa8.86□□□□□ -0.99
CCDC88A-213ENST00000476903 GJA3Q9Y6H8 435 aa8.86□□□□□ -0.99
CCDC88A-213ENST00000476903 ANKRD36CQ5JPF3 1778 aa8.86□□□□□ -0.99
CCDC88A-213ENST00000476903 EML1O00423 815 aa8.85□□□□□ -0.99
CCDC88A-213ENST00000476903 CHL1O00533 1208 aa8.85□□□□□ -0.99
CCDC88A-213ENST00000476903 HYAL3O43820 417 aaPredicted RBP8.85□□□□□ -0.99
CCDC88A-213ENST00000476903 SELPP16109 830 aa8.85□□□□□ -0.99
CCDC88A-213ENST00000476903 EIF2S2P20042 333 aaKnown RBP8.85□□□□□ -0.99
CCDC88A-213ENST00000476903 LMNB1P20700 586 aa8.85□□□□□ -0.99
CCDC88A-213ENST00000476903 LRP8Q14114 963 aa8.85□□□□□ -0.99
CCDC88A-213ENST00000476903 NYXQ9GZU5 481 aa8.85□□□□□ -0.99
CCDC88A-213ENST00000476903 LAS1LQ9Y4W2 734 aaKnown RBP8.85□□□□□ -0.99
CCDC88A-213ENST00000476903 KDM2BQ8NHM5 1336 aa8.84□□□□□ -0.99
CCDC88A-213ENST00000476903 FAM177BA6PVY3 158 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms