RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 MTFR1Q15390 333 aa15.05■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 CCDC158Q5M9N0 1113 aa15.05■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 CCDC84Q86UT8 332 aaPredicted RBP15.05■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 TEX11Q8IYF3 940 aa15.05■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 SH3RF3Q8TEJ3 882 aaPredicted RBP15.05■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 EAF2Q96CJ1 260 aaPredicted RBP15.05■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 C1orf115Q9H7X2 142 aa15.05■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 SNRKQ9NRH2 765 aa15.05■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 HERC5Q9UII4 1024 aaKnown RBP15.05■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 DBNLQ9UJU6 430 aaKnown RBP15.05■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 AGTPBP1Q9UPW5 1226 aa15.05■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 TRIM75PA6NK02 468 aa15.04■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 FMNL1O95466 1100 aaPredicted RBP15.04■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 GRK4P32298 578 aa15.04■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 SLC4A8Q2Y0W8 1093 aa15.04■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 SH3D19Q5HYK7 790 aa15.04■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 TTC39AQ5SRH9 613 aa15.04■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 GADL1Q6ZQY3 521 aa15.04■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 UBE2Q1Q7Z7E8 422 aa15.04■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 PROCA1Q8NCQ7 364 aaPredicted RBP15.04■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 SHISA4Q96DD7 197 aa15.04■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 TBC1D2Q9BYX2 928 aa15.04■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 DHX36Q9H2U1 1008 aaKnown RBP15.04■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 PI4KBQ9UBF8 816 aa15.04■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 GABRQQ9UN88 632 aa15.04■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 ZBED9Q6R2W3 1325 aa15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 MYPNQ86TC9 1320 aa15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 PLCG2P16885 1265 aa15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 ZAP70P43403 619 aa15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 FCGRTP55899 365 aa15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 PRKCZQ05513 592 aa15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 SPP2Q13103 211 aa15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 TREML2Q5T2D2 321 aa15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 NAA16Q6N069 864 aaPredicted RBP15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 CEP85Q6P2H3 762 aa15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 ZNF280CQ8ND82 737 aa15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 DNAJC18Q9H819 358 aa15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 PIH1D3Q9NQM4 214 aaKnown RBP15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 AATFQ9NY61 560 aaKnown RBP eCLIP15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 TLR7Q9NYK1 1049 aaKnown RBP15.03■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 ECM2O94769 699 aaPredicted RBP15.02■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 BAG3O95817 575 aa15.02■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 JAG1P78504 1218 aa15.02■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 FOXP4Q8IVH2 680 aaPredicted RBP15.02■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 ITPRIPQ8IWB1 547 aa15.02■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 FTSJ3Q8IY81 847 aaKnown RBP15.02■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 RAET1EQ8TD07 263 aa15.02■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 TGFBRAP1Q8WUH2 860 aa15.02■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 GCC1Q96CN9 775 aa15.02■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 WDR18Q9BV38 432 aa15.02■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 PCDH10Q9P2E7 1040 aa15.02■□□□□ -0
MSH5-SAPCD1-205ENST00000476085 FLT1P17948 1338 aa15.01□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 USP17L5A8MUK1 530 aa15.01□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 GJB1P08034 283 aa15.01□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 GJA8P48165 433 aa15.01□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 IRF5Q13568 498 aa15.01□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 DIEXFQ68CQ4 756 aaKnown RBP15.01□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 PXYLP1Q8TE99 480 aa15.01□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 CCDC8Q9H0W5 538 aaPredicted RBP15.01□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 MYH1P12882 1939 aa15.01□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 MYCP01106 439 aaPredicted RBP15□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 CCL5P13501 91 aa15□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 FLT3LGP49771 235 aa15□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 OS9Q13438 667 aaPredicted RBP15□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 FAM110CQ1W6H9 321 aa15□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 HABP4Q5JVS0 413 aaKnown RBP15□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 SLAIN1Q8ND83 568 aa15□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 RANBP2P49792 3224 aaKnown RBP15□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 HOXA7P31268 230 aaPredicted RBP14.99□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 HMGCS2P54868 508 aa14.99□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 BACE1P56817 501 aa14.99□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 DYNLL1P63167 89 aaKnown RBP14.99□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 TMED8Q6PL24 325 aaPredicted RBP14.99□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 MAPKAPK5Q8IW41 473 aa14.99□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 ANKRD13CQ8N6S4 541 aa14.99□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 NKX2-3Q8TAU0 364 aa14.99□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 PANK1Q8TE04 598 aa14.99□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 SMCR8Q8TEV9 937 aaPredicted RBP14.99□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 GINM1Q9NU53 330 aa14.99□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 GJD2Q9UKL4 321 aa14.99□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 PALD1Q9ULE6 856 aa14.99□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 PLXNB2O15031 1838 aa14.99□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 ADCY3O60266 1144 aa14.98□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 ASNSP08243 561 aa14.98□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 GCLCP48506 637 aaPredicted RBP14.98□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 SHROOM1Q2M3G4 852 aaPredicted RBP14.98□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 NOL10Q9BSC4 688 aaKnown RBP14.98□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 ASCC2Q9H1I8 757 aaPredicted RBP14.98□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 ANTXR1Q9H6X2 564 aa14.98□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 PNMA3Q9UL41 463 aa14.98□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 TRIOBPQ9H2D6 2365 aa14.98□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 CYP7A1P22680 504 aa14.97□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 UBXN2AP68543 259 aa14.97□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 TATDN1Q6P1N9 297 aa14.97□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 CERS3Q8IU89 383 aa14.97□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 RNF208Q9H0X6 261 aa14.97□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 AS3MTQ9HBK9 375 aa14.97□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 MORF4L1Q9UBU8 362 aa14.97□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 EXOC6BQ9Y2D4 811 aa14.97□□□□□ -0.01
MSH5-SAPCD1-205ENST00000476085 C19orf81C9J6K1 198 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms