RNA–Protein interactions for RNA: ENST00000475375.1

VPS36-203, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 2

Gene VPS36, Length 754 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-203ENST00000475375 DIS3LQ8TF46 1054 aaKnown RBP25.3■■□□□ 1.64
VPS36-203ENST00000475375 CDCA7LQ96GN5 454 aa25.3■■□□□ 1.64
VPS36-203ENST00000475375 NEUROD6Q96NK8 337 aa25.3■■□□□ 1.64
VPS36-203ENST00000475375 MEIS3Q99687 375 aa25.3■■□□□ 1.64
VPS36-203ENST00000475375 OSBPL5Q9H0X9 879 aaPredicted RBP25.3■■□□□ 1.64
VPS36-203ENST00000475375 PHIPQ8WWQ0 1821 aa25.3■■□□□ 1.64
VPS36-203ENST00000475375 HMGCRP04035 888 aa25.29■■□□□ 1.64
VPS36-203ENST00000475375 GCLCP48506 637 aaPredicted RBP25.29■■□□□ 1.64
VPS36-203ENST00000475375 HMGCS2P54868 508 aa25.29■■□□□ 1.64
VPS36-203ENST00000475375 GSTO1P78417 241 aa25.29■■□□□ 1.64
VPS36-203ENST00000475375 PABPC4Q13310 644 aaKnown RBP eCLIP25.29■■□□□ 1.64
VPS36-203ENST00000475375 GORABQ5T7V8 394 aa25.29■■□□□ 1.64
VPS36-203ENST00000475375 ZNF280CQ8ND82 737 aa25.29■■□□□ 1.64
VPS36-203ENST00000475375 SOX1O00570 391 aaPredicted RBP25.28■■□□□ 1.64
VPS36-203ENST00000475375 LDHCP07864 332 aa25.28■■□□□ 1.64
VPS36-203ENST00000475375 C7orf61Q8IZ16 206 aa25.28■■□□□ 1.64
VPS36-203ENST00000475375 LRCH3Q96II8 777 aa25.28■■□□□ 1.64
VPS36-203ENST00000475375 RAI14Q9P0K7 980 aa25.28■■□□□ 1.64
VPS36-203ENST00000475375 SRGAP3O43295 1099 aa25.27■■□□□ 1.64
VPS36-203ENST00000475375 NPM3O75607 178 aaKnown RBP25.27■■□□□ 1.64
VPS36-203ENST00000475375 USP17L5A8MUK1 530 aa25.26■■□□□ 1.63
VPS36-203ENST00000475375 PI16Q6UXB8 463 aa25.26■■□□□ 1.63
VPS36-203ENST00000475375 TBC1D9Q6ZT07 1266 aa25.26■■□□□ 1.63
VPS36-203ENST00000475375 ZNF384Q8TF68 577 aa25.26■■□□□ 1.63
VPS36-203ENST00000475375 TBC1D2Q9BYX2 928 aa25.26■■□□□ 1.63
VPS36-203ENST00000475375 ASCC2Q9H1I8 757 aaPredicted RBP25.26■■□□□ 1.63
VPS36-203ENST00000475375 HMX1Q9NP08 348 aaPredicted RBP25.26■■□□□ 1.63
VPS36-203ENST00000475375 HMG20BQ9P0W2 317 aa25.26■■□□□ 1.63
VPS36-203ENST00000475375 COL6A3P12111 3177 aa25.26■■□□□ 1.63
VPS36-203ENST00000475375 DOCK3Q8IZD9 2030 aa25.25■■□□□ 1.63
VPS36-203ENST00000475375 CAP2P40123 477 aa25.25■■□□□ 1.63
VPS36-203ENST00000475375 TEX11Q8IYF3 940 aa25.25■■□□□ 1.63
VPS36-203ENST00000475375 ANKLE1Q8NAG6 615 aa25.25■■□□□ 1.63
VPS36-203ENST00000475375 SPATA5Q8NB90 893 aa25.25■■□□□ 1.63
VPS36-203ENST00000475375 NSUN4Q96CB9 384 aaKnown RBP25.25■■□□□ 1.63
VPS36-203ENST00000475375 AS3MTQ9HBK9 375 aa25.25■■□□□ 1.63
VPS36-203ENST00000475375 ZMYND8Q9ULU4 1186 aaPredicted RBP25.25■■□□□ 1.63
VPS36-203ENST00000475375 RPTORQ8N122 1335 aa25.24■■□□□ 1.63
VPS36-203ENST00000475375 DLL1O00548 723 aa25.24■■□□□ 1.63
VPS36-203ENST00000475375 MAP4K4O95819 1239 aaPredicted RBP25.24■■□□□ 1.63
VPS36-203ENST00000475375 NOL10Q9BSC4 688 aaKnown RBP25.24■■□□□ 1.63
VPS36-203ENST00000475375 IRX3P78415 501 aaPredicted RBP25.23■■□□□ 1.63
VPS36-203ENST00000475375 TRIM32Q13049 653 aa25.23■■□□□ 1.63
VPS36-203ENST00000475375 NBPF3Q9H094 633 aa25.23■■□□□ 1.63
VPS36-203ENST00000475375 LRP2BPQ9P2M1 347 aa25.23■■□□□ 1.63
VPS36-203ENST00000475375 GNAI3P08754 354 aa25.22■■□□□ 1.63
VPS36-203ENST00000475375 CT47B1P0C2W7 299 aaPredicted RBP25.22■■□□□ 1.63
VPS36-203ENST00000475375 RRP1BQ14684 758 aaKnown RBP25.22■■□□□ 1.63
VPS36-203ENST00000475375 HERC5Q9UII4 1024 aaKnown RBP25.22■■□□□ 1.63
VPS36-203ENST00000475375 GJD2Q9UKL4 321 aa25.22■■□□□ 1.63
VPS36-203ENST00000475375 A0A0C4DFX4 3053 aa25.22■■□□□ 1.63
VPS36-203ENST00000475375 COL2A1P02458 1487 aaPredicted RBP25.21■■□□□ 1.63
VPS36-203ENST00000475375 LOC285556D6RIA3 1793 aa25.21■■□□□ 1.63
VPS36-203ENST00000475375 MTMR2Q13614 643 aa25.21■■□□□ 1.63
VPS36-203ENST00000475375 TMOD4Q9NZQ9 345 aa25.21■■□□□ 1.63
VPS36-203ENST00000475375 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.21■■□□□ 1.63
VPS36-203ENST00000475375 SYN1P17600 705 aa25.2■■□□□ 1.62
VPS36-203ENST00000475375 CYP2B6P20813 491 aa25.2■■□□□ 1.62
VPS36-203ENST00000475375 SH3D19Q5HYK7 790 aa25.2■■□□□ 1.62
VPS36-203ENST00000475375 SH3RF3Q8TEJ3 882 aaPredicted RBP25.2■■□□□ 1.62
VPS36-203ENST00000475375 GDF15Q99988 308 aa25.2■■□□□ 1.62
VPS36-203ENST00000475375 C11orf49Q9H6J7 331 aa25.2■■□□□ 1.62
VPS36-203ENST00000475375 TRIB2Q92519 343 aa25.19■■□□□ 1.62
VPS36-203ENST00000475375 TRIM34Q9BYJ4 488 aa25.19■■□□□ 1.62
VPS36-203ENST00000475375 PI4KBQ9UBF8 816 aa25.19■■□□□ 1.62
VPS36-203ENST00000475375 MORF4L1Q9UBU8 362 aa25.19■■□□□ 1.62
VPS36-203ENST00000475375 ALPK3Q96L96 1907 aa25.19■■□□□ 1.62
VPS36-203ENST00000475375 ATAD5Q96QE3 1844 aa25.19■■□□□ 1.62
VPS36-203ENST00000475375 ARID4AP29374 1257 aaPredicted RBP25.18■■□□□ 1.62
VPS36-203ENST00000475375 BMP8BP34820 402 aa25.18■■□□□ 1.62
VPS36-203ENST00000475375 TRMT2AQ8IZ69 625 aaKnown RBP25.18■■□□□ 1.62
VPS36-203ENST00000475375 ASNSP08243 561 aa25.17■■□□□ 1.62
VPS36-203ENST00000475375 PRKAR2AP13861 404 aaKnown RBP25.17■■□□□ 1.62
VPS36-203ENST00000475375 MCAMP43121 646 aa25.17■■□□□ 1.62
VPS36-203ENST00000475375 BACE1P56817 501 aa25.17■■□□□ 1.62
VPS36-203ENST00000475375 G3BP1Q13283 466 aaKnown RBP eCLIP25.17■■□□□ 1.62
VPS36-203ENST00000475375 MTX1Q13505 466 aa25.17■■□□□ 1.62
VPS36-203ENST00000475375 CCAR1Q8IX12 1150 aaKnown RBP25.17■■□□□ 1.62
VPS36-203ENST00000475375 P2RX7Q99572 595 aaKnown RBP25.17■■□□□ 1.62
VPS36-203ENST00000475375 NUDT12Q9BQG2 462 aa25.17■■□□□ 1.62
VPS36-203ENST00000475375 DHX36Q9H2U1 1008 aaKnown RBP25.17■■□□□ 1.62
VPS36-203ENST00000475375 AATFQ9NY61 560 aaKnown RBP eCLIP25.17■■□□□ 1.62
VPS36-203ENST00000475375 PEX10O60683 326 aa25.16■■□□□ 1.62
VPS36-203ENST00000475375 BAG3O95817 575 aa25.16■■□□□ 1.62
VPS36-203ENST00000475375 UQCRFS1P1P0C7P4 283 aa25.16■■□□□ 1.62
VPS36-203ENST00000475375 PDE3AQ14432 1141 aa25.16■■□□□ 1.62
VPS36-203ENST00000475375 NAA16Q6N069 864 aaPredicted RBP25.16■■□□□ 1.62
VPS36-203ENST00000475375 CRACR2BQ8N4Y2 399 aaPredicted RBP25.16■■□□□ 1.62
VPS36-203ENST00000475375 GPRC5AQ8NFJ5 357 aa25.16■■□□□ 1.62
VPS36-203ENST00000475375 WDR18Q9BV38 432 aa25.16■■□□□ 1.62
VPS36-203ENST00000475375 MAGEA10P43363 369 aaPredicted RBP25.15■■□□□ 1.62
VPS36-203ENST00000475375 MAPKAPK5Q8IW41 473 aa25.15■■□□□ 1.62
VPS36-203ENST00000475375 DEFB123Q8N688 67 aa25.15■■□□□ 1.62
VPS36-203ENST00000475375 SOCS4Q8WXH5 440 aa25.15■■□□□ 1.62
VPS36-203ENST00000475375 SNRKQ9NRH2 765 aa25.15■■□□□ 1.62
VPS36-203ENST00000475375 OGDHLQ9ULD0 1010 aa25.15■■□□□ 1.62
VPS36-203ENST00000475375 PLCG2P16885 1265 aa25.14■■□□□ 1.62
VPS36-203ENST00000475375 MNX1P50219 401 aaPredicted RBP25.14■■□□□ 1.62
VPS36-203ENST00000475375 RARSP54136 660 aaKnown RBP25.14■■□□□ 1.62
VPS36-203ENST00000475375 HERVK_113P62684 666 aa25.14■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 207.9 ms