RNA–Protein interactions for RNA: ENST00000471658.5

PSPC1-203, Transcript of paraspeckle component 1, humanhuman

TSL 1 (best)

Gene PSPC1, Length 1,647 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-203ENST00000471658 DHX36Q9H2U1 1008 aaKnown RBP22.78■■□□□ 1.24
PSPC1-203ENST00000471658 NEDD4P46934 1319 aa22.77■■□□□ 1.24
PSPC1-203ENST00000471658 FAM196BA6NMK8 535 aa22.77■■□□□ 1.24
PSPC1-203ENST00000471658 TNFAIP1Q13829 316 aa22.77■■□□□ 1.24
PSPC1-203ENST00000471658 APOBEC3FQ8IUX4 373 aaKnown RBP22.77■■□□□ 1.24
PSPC1-203ENST00000471658 STAG1Q8WVM7 1258 aa22.77■■□□□ 1.24
PSPC1-203ENST00000471658 ATRNL1Q5VV63 1379 aa22.77■■□□□ 1.23
PSPC1-203ENST00000471658 LAMA4Q16363 1823 aa22.76■■□□□ 1.23
PSPC1-203ENST00000471658 HLA-DOAP06340 250 aa22.76■■□□□ 1.23
PSPC1-203ENST00000471658 MFSD6Q6ZSS7 791 aa22.76■■□□□ 1.23
PSPC1-203ENST00000471658 PNMA8AQ86V59 439 aaPredicted RBP22.76■■□□□ 1.23
PSPC1-203ENST00000471658 DCPSQ96C86 337 aaKnown RBP22.76■■□□□ 1.23
PSPC1-203ENST00000471658 IL17RAQ96F46 866 aa22.76■■□□□ 1.23
PSPC1-203ENST00000471658 CSRNP1Q96S65 589 aa22.76■■□□□ 1.23
PSPC1-203ENST00000471658 ADM5C9JUS6 153 aa22.75■■□□□ 1.23
PSPC1-203ENST00000471658 GABPAQ06546 454 aa22.75■■□□□ 1.23
PSPC1-203ENST00000471658 RRP12Q5JTH9 1297 aaKnown RBP22.75■■□□□ 1.23
PSPC1-203ENST00000471658 UPF3BQ9BZI7 483 aaKnown RBP22.75■■□□□ 1.23
PSPC1-203ENST00000471658 TOMM22Q9NS69 142 aa22.75■■□□□ 1.23
PSPC1-203ENST00000471658 PI4KBQ9UBF8 816 aa22.75■■□□□ 1.23
PSPC1-203ENST00000471658 CLEC11AQ9Y240 323 aa22.75■■□□□ 1.23
PSPC1-203ENST00000471658 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.75■■□□□ 1.23
PSPC1-203ENST00000471658 LAMB1P07942 1786 aa22.75■■□□□ 1.23
PSPC1-203ENST00000471658 ROBO3Q96MS0 1386 aa22.75■■□□□ 1.23
PSPC1-203ENST00000471658 PITPNM2Q9BZ72 1349 aa22.75■■□□□ 1.23
PSPC1-203ENST00000471658 CDK8P49336 464 aa22.75■■□□□ 1.23
PSPC1-203ENST00000471658 KRT32Q14532 448 aa22.75■■□□□ 1.23
PSPC1-203ENST00000471658 NBPF12Q5TAG4 269 aaPredicted RBP22.75■■□□□ 1.23
PSPC1-203ENST00000471658 C16orf86Q6ZW13 317 aa22.75■■□□□ 1.23
PSPC1-203ENST00000471658 ZC3H15Q8WU90 426 aaKnown RBP22.75■■□□□ 1.23
PSPC1-203ENST00000471658 NEK1Q96PY6 1258 aa22.75■■□□□ 1.23
PSPC1-203ENST00000471658 DNAJC18Q9H819 358 aa22.75■■□□□ 1.23
PSPC1-203ENST00000471658 SERPINB13Q9UIV8 391 aa22.75■■□□□ 1.23
PSPC1-203ENST00000471658 POLR2AP24928 1970 aaKnown RBP22.74■■□□□ 1.23
PSPC1-203ENST00000471658 COL2A1P02458 1487 aaPredicted RBP22.74■■□□□ 1.23
PSPC1-203ENST00000471658 B4E1Z4 1266 aa22.74■■□□□ 1.23
PSPC1-203ENST00000471658 SLC3A2P08195 630 aaKnown RBP22.74■■□□□ 1.23
PSPC1-203ENST00000471658 FGRP09769 529 aa22.74■■□□□ 1.23
PSPC1-203ENST00000471658 CASTP20810 708 aaKnown RBP22.74■■□□□ 1.23
PSPC1-203ENST00000471658 SIPA1L1O43166 1804 aa22.74■■□□□ 1.23
PSPC1-203ENST00000471658 MIGA2Q7L4E1 593 aa22.73■■□□□ 1.23
PSPC1-203ENST00000471658 CHST3Q7LGC8 479 aa22.73■■□□□ 1.23
PSPC1-203ENST00000471658 USP48Q86UV5 1035 aa22.73■■□□□ 1.23
PSPC1-203ENST00000471658 TCEANC2Q96MN5 208 aa22.73■■□□□ 1.23
PSPC1-203ENST00000471658 RNF41Q9H4P4 317 aaPredicted RBP22.73■■□□□ 1.23
PSPC1-203ENST00000471658 CYB5R4Q7L1T6 521 aa22.72■■□□□ 1.23
PSPC1-203ENST00000471658 KRT26Q7Z3Y9 468 aa22.72■■□□□ 1.23
PSPC1-203ENST00000471658 FOXP4Q8IVH2 680 aaPredicted RBP22.72■■□□□ 1.23
PSPC1-203ENST00000471658 MB21D2Q8IYB1 491 aaPredicted RBP22.72■■□□□ 1.23
PSPC1-203ENST00000471658 CRACR2BQ8N4Y2 399 aaPredicted RBP22.72■■□□□ 1.23
PSPC1-203ENST00000471658 NCOA7Q8NI08 942 aa22.72■■□□□ 1.23
PSPC1-203ENST00000471658 TM6SF1Q9BZW5 370 aa22.72■■□□□ 1.23
PSPC1-203ENST00000471658 EHD4Q9H223 541 aa22.72■■□□□ 1.23
PSPC1-203ENST00000471658 MKNK2Q9HBH9 465 aa22.72■■□□□ 1.23
PSPC1-203ENST00000471658 ZSWIM6Q9HCJ5 1215 aa22.72■■□□□ 1.23
PSPC1-203ENST00000471658 SHMT1P34896 483 aa22.71■■□□□ 1.23
PSPC1-203ENST00000471658 PDE4BQ07343 736 aa22.71■■□□□ 1.23
PSPC1-203ENST00000471658 FAM47AQ5JRC9 791 aa22.71■■□□□ 1.23
PSPC1-203ENST00000471658 METTL16Q86W50 562 aaKnown RBP22.71■■□□□ 1.23
PSPC1-203ENST00000471658 SULF1Q8IWU6 871 aa22.71■■□□□ 1.23
PSPC1-203ENST00000471658 GLIS2Q9BZE0 524 aaPredicted RBP22.71■■□□□ 1.23
PSPC1-203ENST00000471658 ORC4O43929 436 aa22.71■■□□□ 1.23
PSPC1-203ENST00000471658 KDM4AO75164 1064 aa22.71■■□□□ 1.23
PSPC1-203ENST00000471658 RASA1P20936 1047 aa22.71■■□□□ 1.23
PSPC1-203ENST00000471658 PSMA5P28066 241 aa22.71■■□□□ 1.23
PSPC1-203ENST00000471658 TRDNQ13061 729 aa22.71■■□□□ 1.23
PSPC1-203ENST00000471658 MAP1SQ66K74 1059 aaPredicted RBP22.71■■□□□ 1.23
PSPC1-203ENST00000471658 BLOC1S2Q6QNY1 142 aa22.71■■□□□ 1.23
PSPC1-203ENST00000471658 ZSWIM5Q9P217 1185 aa22.71■■□□□ 1.23
PSPC1-203ENST00000471658 RANBP6O60518 1105 aaKnown RBP22.7■■□□□ 1.22
PSPC1-203ENST00000471658 ANTXR2P58335 489 aa22.7■■□□□ 1.22
PSPC1-203ENST00000471658 RUFY3Q7L099 469 aa22.7■■□□□ 1.22
PSPC1-203ENST00000471658 RALYLQ86SE5 291 aaKnown RBP22.7■■□□□ 1.22
PSPC1-203ENST00000471658 LRRC2Q9BYS8 371 aa22.7■■□□□ 1.22
PSPC1-203ENST00000471658 KRT23Q9C075 422 aa22.7■■□□□ 1.22
PSPC1-203ENST00000471658 CNNM2Q9H8M5 875 aa22.7■■□□□ 1.22
PSPC1-203ENST00000471658 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.7■■□□□ 1.22
PSPC1-203ENST00000471658 RBM19Q9Y4C8 960 aaKnown RBP22.7■■□□□ 1.22
PSPC1-203ENST00000471658 RPS6KB1P23443 525 aa22.69■■□□□ 1.22
PSPC1-203ENST00000471658 NEK4P51957 841 aa22.69■■□□□ 1.22
PSPC1-203ENST00000471658 RRP1BQ14684 758 aaKnown RBP22.69■■□□□ 1.22
PSPC1-203ENST00000471658 TRIM34Q9BYJ4 488 aa22.69■■□□□ 1.22
PSPC1-203ENST00000471658 FZD1Q9UP38 647 aa22.69■■□□□ 1.22
PSPC1-203ENST00000471658 PPP2R3BQ9Y5P8 575 aa22.69■■□□□ 1.22
PSPC1-203ENST00000471658 CYP46A1Q9Y6A2 500 aa22.69■■□□□ 1.22
PSPC1-203ENST00000471658 EXOSC10Q01780 885 aaKnown RBP22.68■■□□□ 1.22
PSPC1-203ENST00000471658 RABEP1Q15276 862 aa22.68■■□□□ 1.22
PSPC1-203ENST00000471658 SHROOM1Q2M3G4 852 aaPredicted RBP22.68■■□□□ 1.22
PSPC1-203ENST00000471658 ZNF444Q8N0Y2 327 aaPredicted RBP22.68■■□□□ 1.22
PSPC1-203ENST00000471658 SWAP70Q9UH65 585 aa22.68■■□□□ 1.22
PSPC1-203ENST00000471658 PCP11498 1178 aaKnown RBP22.68■■□□□ 1.22
PSPC1-203ENST00000471658 TFAP4Q01664 338 aa22.68■■□□□ 1.22
PSPC1-203ENST00000471658 FMR1Q06787 632 aaKnown RBP eCLIP22.68■■□□□ 1.22
PSPC1-203ENST00000471658 DHX32Q7L7V1 743 aaKnown RBP22.68■■□□□ 1.22
PSPC1-203ENST00000471658 ZKSCAN3Q9BRR0 538 aa22.68■■□□□ 1.22
PSPC1-203ENST00000471658 GPHNQ9NQX3 736 aaPredicted RBP22.68■■□□□ 1.22
PSPC1-203ENST00000471658 HERC5Q9UII4 1024 aaKnown RBP22.68■■□□□ 1.22
PSPC1-203ENST00000471658 PRC1O43663 620 aa22.67■■□□□ 1.22
PSPC1-203ENST00000471658 TBC1D12O60347 775 aa22.67■■□□□ 1.22
PSPC1-203ENST00000471658 AKR1B1P15121 316 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms