RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 GCC1Q96CN9 775 aa25.88■■□□□ 1.73
COL9A3-207ENST00000467819 NOL10Q9BSC4 688 aaKnown RBP25.88■■□□□ 1.73
COL9A3-207ENST00000467819 GPR108Q9NPR9 543 aa25.88■■□□□ 1.73
COL9A3-207ENST00000467819 DOCK3Q8IZD9 2030 aa25.87■■□□□ 1.73
COL9A3-207ENST00000467819 SURF6O75683 361 aaKnown RBP25.87■■□□□ 1.73
COL9A3-207ENST00000467819 PRKCZQ05513 592 aa25.87■■□□□ 1.73
COL9A3-207ENST00000467819 CCDC158Q5M9N0 1113 aa25.87■■□□□ 1.73
COL9A3-207ENST00000467819 ITPRIPQ8IWB1 547 aa25.87■■□□□ 1.73
COL9A3-207ENST00000467819 SH3RF3Q8TEJ3 882 aaPredicted RBP25.87■■□□□ 1.73
COL9A3-207ENST00000467819 SLC45A1Q9Y2W3 748 aa25.87■■□□□ 1.73
COL9A3-207ENST00000467819 NAA16Q6N069 864 aaPredicted RBP25.86■■□□□ 1.73
COL9A3-207ENST00000467819 SMCR8Q8TEV9 937 aaPredicted RBP25.86■■□□□ 1.73
COL9A3-207ENST00000467819 AATFQ9NY61 560 aaKnown RBP eCLIP25.86■■□□□ 1.73
COL9A3-207ENST00000467819 MIER1Q8N108 512 aa25.85■■□□□ 1.73
COL9A3-207ENST00000467819 BIN2Q9UBW5 565 aaPredicted RBP25.85■■□□□ 1.73
COL9A3-207ENST00000467819 GABRQQ9UN88 632 aa25.85■■□□□ 1.73
COL9A3-207ENST00000467819 AGTPBP1Q9UPW5 1226 aa25.85■■□□□ 1.73
COL9A3-207ENST00000467819 RLBP1P12271 317 aa25.84■■□□□ 1.73
COL9A3-207ENST00000467819 CYP2E1P05181 493 aaPredicted RBP25.83■■□□□ 1.73
COL9A3-207ENST00000467819 SPP2Q13103 211 aa25.83■■□□□ 1.73
COL9A3-207ENST00000467819 TREML2Q5T2D2 321 aa25.83■■□□□ 1.73
COL9A3-207ENST00000467819 BAG3O95817 575 aa25.82■■□□□ 1.72
COL9A3-207ENST00000467819 CAP2P40123 477 aa25.82■■□□□ 1.72
COL9A3-207ENST00000467819 RRP1BQ14684 758 aaKnown RBP25.82■■□□□ 1.72
COL9A3-207ENST00000467819 SHISA4Q96DD7 197 aa25.82■■□□□ 1.72
COL9A3-207ENST00000467819 MYH1P12882 1939 aa25.81■■□□□ 1.72
COL9A3-207ENST00000467819 CCL5P13501 91 aa25.81■■□□□ 1.72
COL9A3-207ENST00000467819 ZAP70P43403 619 aa25.81■■□□□ 1.72
COL9A3-207ENST00000467819 ADGRA1Q86SQ6 560 aa25.81■■□□□ 1.72
COL9A3-207ENST00000467819 MAPKAPK5Q8IW41 473 aa25.81■■□□□ 1.72
COL9A3-207ENST00000467819 PROCA1Q8NCQ7 364 aaPredicted RBP25.81■■□□□ 1.72
COL9A3-207ENST00000467819 ZNF280CQ8ND82 737 aa25.81■■□□□ 1.72
COL9A3-207ENST00000467819 TGFBRAP1Q8WUH2 860 aa25.81■■□□□ 1.72
COL9A3-207ENST00000467819 TLR7Q9NYK1 1049 aaKnown RBP25.81■■□□□ 1.72
COL9A3-207ENST00000467819 HERC5Q9UII4 1024 aaKnown RBP25.81■■□□□ 1.72
COL9A3-207ENST00000467819 DBNLQ9UJU6 430 aaKnown RBP25.81■■□□□ 1.72
COL9A3-207ENST00000467819 TNPO2O14787 897 aaKnown RBP25.8■■□□□ 1.72
COL9A3-207ENST00000467819 ZBTB7BO15156 539 aaPredicted RBP25.8■■□□□ 1.72
COL9A3-207ENST00000467819 PLCG2P16885 1265 aa25.8■■□□□ 1.72
COL9A3-207ENST00000467819 HMGCS2P54868 508 aa25.8■■□□□ 1.72
COL9A3-207ENST00000467819 UBXN2AP68543 259 aa25.8■■□□□ 1.72
COL9A3-207ENST00000467819 HABP4Q5JVS0 413 aaKnown RBP25.8■■□□□ 1.72
COL9A3-207ENST00000467819 ANKRD13CQ8N6S4 541 aa25.8■■□□□ 1.72
COL9A3-207ENST00000467819 SLAIN1Q8ND83 568 aa25.8■■□□□ 1.72
COL9A3-207ENST00000467819 CCDC8Q9H0W5 538 aaPredicted RBP25.8■■□□□ 1.72
COL9A3-207ENST00000467819 PIH1D3Q9NQM4 214 aaKnown RBP25.8■■□□□ 1.72
COL9A3-207ENST00000467819 PI4KBQ9UBF8 816 aa25.8■■□□□ 1.72
COL9A3-207ENST00000467819 PNMA3Q9UL41 463 aa25.8■■□□□ 1.72
COL9A3-207ENST00000467819 NOP58Q9Y2X3 529 aaKnown RBP25.8■■□□□ 1.72
COL9A3-207ENST00000467819 USP17L5A8MUK1 530 aa25.79■■□□□ 1.72
COL9A3-207ENST00000467819 FLT3LGP49771 235 aa25.79■■□□□ 1.72
COL9A3-207ENST00000467819 RNF208Q9H0X6 261 aa25.79■■□□□ 1.72
COL9A3-207ENST00000467819 DHX36Q9H2U1 1008 aaKnown RBP25.79■■□□□ 1.72
COL9A3-207ENST00000467819 FLT1P17948 1338 aa25.79■■□□□ 1.72
COL9A3-207ENST00000467819 ADCY3O60266 1144 aa25.78■■□□□ 1.72
COL9A3-207ENST00000467819 PPP4CP60510 307 aa25.78■■□□□ 1.72
COL9A3-207ENST00000467819 ZNF512BQ96KM6 892 aaPredicted RBP25.78■■□□□ 1.72
COL9A3-207ENST00000467819 TBC1D2Q9BYX2 928 aa25.78■■□□□ 1.72
COL9A3-207ENST00000467819 PCDH10Q9P2E7 1040 aa25.78■■□□□ 1.72
COL9A3-207ENST00000467819 GJB1P08034 283 aa25.77■■□□□ 1.72
COL9A3-207ENST00000467819 ELNP15502 786 aa25.77■■□□□ 1.72
COL9A3-207ENST00000467819 NKX2-3Q8TAU0 364 aa25.77■■□□□ 1.72
COL9A3-207ENST00000467819 EAF2Q96CJ1 260 aaPredicted RBP25.77■■□□□ 1.72
COL9A3-207ENST00000467819 AS3MTQ9HBK9 375 aa25.77■■□□□ 1.72
COL9A3-207ENST00000467819 TAOK2Q9UL54 1235 aa25.77■■□□□ 1.72
COL9A3-207ENST00000467819 GJA8P48165 433 aa25.76■■□□□ 1.71
COL9A3-207ENST00000467819 CRACR2BQ8N4Y2 399 aaPredicted RBP25.76■■□□□ 1.71
COL9A3-207ENST00000467819 TRIM34Q9BYJ4 488 aa25.76■■□□□ 1.71
COL9A3-207ENST00000467819 UNC93B1Q9H1C4 597 aa25.76■■□□□ 1.71
COL9A3-207ENST00000467819 SAP30BPQ9UHR5 308 aaKnown RBP25.76■■□□□ 1.71
COL9A3-207ENST00000467819 PALD1Q9ULE6 856 aa25.76■■□□□ 1.71
COL9A3-207ENST00000467819 CYP7A1P22680 504 aa25.75■■□□□ 1.71
COL9A3-207ENST00000467819 DYNLL1P63167 89 aaKnown RBP25.75■■□□□ 1.71
COL9A3-207ENST00000467819 PABPC4Q13310 644 aaKnown RBP eCLIP25.75■■□□□ 1.71
COL9A3-207ENST00000467819 FAM110CQ1W6H9 321 aa25.75■■□□□ 1.71
COL9A3-207ENST00000467819 DIEXFQ68CQ4 756 aaKnown RBP25.75■■□□□ 1.71
COL9A3-207ENST00000467819 CEP85Q6P2H3 762 aa25.75■■□□□ 1.71
COL9A3-207ENST00000467819 COA7Q96BR5 231 aa25.75■■□□□ 1.71
COL9A3-207ENST00000467819 DNAJC18Q9H819 358 aa25.75■■□□□ 1.71
COL9A3-207ENST00000467819 IDH1O75874 414 aaKnown RBP25.74■■□□□ 1.71
COL9A3-207ENST00000467819 ASCC2Q9H1I8 757 aaPredicted RBP25.74■■□□□ 1.71
COL9A3-207ENST00000467819 EXOC6BQ9Y2D4 811 aa25.74■■□□□ 1.71
COL9A3-207ENST00000467819 NDUFB9Q9Y6M9 179 aa25.74■■□□□ 1.71
COL9A3-207ENST00000467819 GDF11O95390 407 aa25.73■■□□□ 1.71
COL9A3-207ENST00000467819 INHAP05111 366 aa25.73■■□□□ 1.71
COL9A3-207ENST00000467819 JAG1P78504 1218 aa25.73■■□□□ 1.71
COL9A3-207ENST00000467819 MTMR2Q13614 643 aa25.73■■□□□ 1.71
COL9A3-207ENST00000467819 SHROOM1Q2M3G4 852 aaPredicted RBP25.73■■□□□ 1.71
COL9A3-207ENST00000467819 SH3D19Q5HYK7 790 aa25.73■■□□□ 1.71
COL9A3-207ENST00000467819 PANK1Q8TE04 598 aa25.73■■□□□ 1.71
COL9A3-207ENST00000467819 H0YGN5 161 aa25.72■■□□□ 1.71
COL9A3-207ENST00000467819 ASNSP08243 561 aa25.72■■□□□ 1.71
COL9A3-207ENST00000467819 GCLCP48506 637 aaPredicted RBP25.72■■□□□ 1.71
COL9A3-207ENST00000467819 IRF5Q13568 498 aa25.72■■□□□ 1.71
COL9A3-207ENST00000467819 FOXP4Q8IVH2 680 aaPredicted RBP25.72■■□□□ 1.71
COL9A3-207ENST00000467819 MIGA1Q8NAN2 632 aa25.72■■□□□ 1.71
COL9A3-207ENST00000467819 PXYLP1Q8TE99 480 aa25.72■■□□□ 1.71
COL9A3-207ENST00000467819 U2AF1L4Q8WU68 220 aaKnown RBP25.72■■□□□ 1.71
COL9A3-207ENST00000467819 WDR18Q9BV38 432 aa25.72■■□□□ 1.71
COL9A3-207ENST00000467819 TRIOBPQ9H2D6 2365 aa25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms