RNA–Protein interactions for RNA: ENST00000463631.1

HMGN1-209, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 583 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-209ENST00000463631 COA7Q96BR5 231 aa21.38■■□□□ 1.01
HMGN1-209ENST00000463631 CRISPLD2Q9H0B8 497 aa21.38■■□□□ 1.01
HMGN1-209ENST00000463631 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.38■■□□□ 1.01
HMGN1-209ENST00000463631 LAMA3Q16787 3333 aa21.38■■□□□ 1.01
HMGN1-209ENST00000463631 SRGAP3O43295 1099 aa21.37■■□□□ 1.01
HMGN1-209ENST00000463631 GSTO1P78417 241 aa21.37■■□□□ 1.01
HMGN1-209ENST00000463631 CCDC84Q86UT8 332 aaPredicted RBP21.37■■□□□ 1.01
HMGN1-209ENST00000463631 ANKRD13CQ8N6S4 541 aa21.37■■□□□ 1.01
HMGN1-209ENST00000463631 NSUN4Q96CB9 384 aaKnown RBP21.37■■□□□ 1.01
HMGN1-209ENST00000463631 DEFB118Q96PH6 123 aa21.37■■□□□ 1.01
HMGN1-209ENST00000463631 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.37■■□□□ 1.01
HMGN1-209ENST00000463631 HMG20BQ9P0W2 317 aa21.37■■□□□ 1.01
HMGN1-209ENST00000463631 ALPK3Q96L96 1907 aa21.37■■□□□ 1.01
HMGN1-209ENST00000463631 LDHCP07864 332 aa21.36■■□□□ 1.01
HMGN1-209ENST00000463631 ARID4AP29374 1257 aaPredicted RBP21.36■■□□□ 1.01
HMGN1-209ENST00000463631 GCLCP48506 637 aaPredicted RBP21.36■■□□□ 1.01
HMGN1-209ENST00000463631 SPATA5Q8NB90 893 aa21.36■■□□□ 1.01
HMGN1-209ENST00000463631 ZNF280CQ8ND82 737 aa21.36■■□□□ 1.01
HMGN1-209ENST00000463631 SIPA1L1O43166 1804 aa21.36■■□□□ 1.01
HMGN1-209ENST00000463631 PABPC4Q13310 644 aaKnown RBP eCLIP21.35■■□□□ 1.018e-10■■□□□ 13.3
HMGN1-209ENST00000463631 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.35■■□□□ 1.01
HMGN1-209ENST00000463631 FAM196BA6NMK8 535 aa21.34■■□□□ 1.01
HMGN1-209ENST00000463631 RARSP54136 660 aaKnown RBP21.34■■□□□ 1.01
HMGN1-209ENST00000463631 SPP2Q13103 211 aa21.34■■□□□ 1.01
HMGN1-209ENST00000463631 PI16Q6UXB8 463 aa21.34■■□□□ 1.01
HMGN1-209ENST00000463631 HERC5Q9UII4 1024 aaKnown RBP21.34■■□□□ 1.01
HMGN1-209ENST00000463631 EVI5O60447 810 aa21.33■■□□□ 1.01
HMGN1-209ENST00000463631 TFRCP02786 760 aaKnown RBP21.33■■□□□ 1.01
HMGN1-209ENST00000463631 HMGCRP04035 888 aa21.33■■□□□ 1.01
HMGN1-209ENST00000463631 CAP2P40123 477 aa21.33■■□□□ 1.01
HMGN1-209ENST00000463631 SH3D19Q5HYK7 790 aa21.33■■□□□ 1.01
HMGN1-209ENST00000463631 ANKLE1Q8NAG6 615 aa21.33■■□□□ 1.01
HMGN1-209ENST00000463631 FOCADQ5VW36 1801 aa21.33■■□□□ 1.01
HMGN1-209ENST00000463631 HMGCS2P54868 508 aa21.32■■□□□ 1
HMGN1-209ENST00000463631 NEUROD6Q96NK8 337 aa21.32■■□□□ 1
HMGN1-209ENST00000463631 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.32■■□□□ 14e-10■■■■□ 24
HMGN1-209ENST00000463631 CUL9Q8IWT3 2517 aa21.32■■□□□ 1
HMGN1-209ENST00000463631 CDK5RAP2Q96SN8 1893 aa21.32■■□□□ 1
HMGN1-209ENST00000463631 PLXNB2O15031 1838 aa21.32■■□□□ 1
HMGN1-209ENST00000463631 USP17L5A8MUK1 530 aa21.31■■□□□ 1
HMGN1-209ENST00000463631 TBC1D9Q6ZT07 1266 aa21.31■■□□□ 1
HMGN1-209ENST00000463631 ASCC2Q9H1I8 757 aaPredicted RBP21.31■■□□□ 1
HMGN1-209ENST00000463631 RAI14Q9P0K7 980 aa21.31■■□□□ 1
HMGN1-209ENST00000463631 MORF4L1Q9UBU8 362 aa21.31■■□□□ 1
HMGN1-209ENST00000463631 TAOK2Q9UL54 1235 aa21.31■■□□□ 1
HMGN1-209ENST00000463631 MCAMP43121 646 aa21.3■■□□□ 1
HMGN1-209ENST00000463631 RRP1BQ14684 758 aaKnown RBP21.3■■□□□ 1
HMGN1-209ENST00000463631 GORABQ5T7V8 394 aa21.3■■□□□ 1
HMGN1-209ENST00000463631 NECAB2Q7Z6G3 386 aa21.3■■□□□ 1
HMGN1-209ENST00000463631 TEX11Q8IYF3 940 aa21.3■■□□□ 1
HMGN1-209ENST00000463631 PAWRQ96IZ0 340 aaKnown RBP21.3■■□□□ 1
HMGN1-209ENST00000463631 WDR18Q9BV38 432 aa21.3■■□□□ 1
HMGN1-209ENST00000463631 DHX36Q9H2U1 1008 aaKnown RBP21.3■■□□□ 1
HMGN1-209ENST00000463631 AS3MTQ9HBK9 375 aa21.3■■□□□ 1
HMGN1-209ENST00000463631 GJD2Q9UKL4 321 aa21.3■■□□□ 1
HMGN1-209ENST00000463631 UQCRFS1P1P0C7P4 283 aa21.29■■□□□ 1
HMGN1-209ENST00000463631 PI4KBQ9UBF8 816 aa21.29■■□□□ 1
HMGN1-209ENST00000463631 RPTORQ8N122 1335 aa21.29■■□□□ 1
HMGN1-209ENST00000463631 METTL16Q86W50 562 aaKnown RBP21.28■■□□□ 1
HMGN1-209ENST00000463631 DIS3LQ8TF46 1054 aaKnown RBP21.28■■□□□ 1
HMGN1-209ENST00000463631 DDX60LQ5H9U9 1706 aaKnown RBP21.28■■□□□ 1
HMGN1-209ENST00000463631 IGSF3O75054 1194 aa21.27■■□□□ 1
HMGN1-209ENST00000463631 GNAI2P04899 355 aa21.27■■□□□ 1
HMGN1-209ENST00000463631 ASNSP08243 561 aa21.27■■□□□ 1
HMGN1-209ENST00000463631 PLCG2P16885 1265 aa21.27■■□□□ 1
HMGN1-209ENST00000463631 SH3RF3Q8TEJ3 882 aaPredicted RBP21.27■■□□□ 1
HMGN1-209ENST00000463631 NOL10Q9BSC4 688 aaKnown RBP21.27■■□□□ 1
HMGN1-209ENST00000463631 HMX1Q9NP08 348 aaPredicted RBP21.27■■□□□ 1
HMGN1-209ENST00000463631 GINM1Q9NU53 330 aa21.27■■□□□ 1
HMGN1-209ENST00000463631 LRP2BPQ9P2M1 347 aa21.27■■□□□ 1
HMGN1-209ENST00000463631 TRIM27P14373 513 aa21.26■□□□□ 0.99
HMGN1-209ENST00000463631 HOXA7P31268 230 aaPredicted RBP21.26■□□□□ 0.99
HMGN1-209ENST00000463631 BACE1P56817 501 aa21.26■□□□□ 0.99
HMGN1-209ENST00000463631 PPP4CP60510 307 aa21.26■□□□□ 0.99
HMGN1-209ENST00000463631 MTMR2Q13614 643 aa21.26■□□□□ 0.99
HMGN1-209ENST00000463631 MAP3K21Q5TCX8 1036 aa21.26■□□□□ 0.99
HMGN1-209ENST00000463631 GPR108Q9NPR9 543 aa21.26■□□□□ 0.99
HMGN1-209ENST00000463631 COL6A3P12111 3177 aa21.25■□□□□ 0.99
HMGN1-209ENST00000463631 PNMA6EA0A0J9YXQ4 647 aa21.25■□□□□ 0.99
HMGN1-209ENST00000463631 IPO8O15397 1037 aaKnown RBP21.25■□□□□ 0.99
HMGN1-209ENST00000463631 BAG3O95817 575 aa21.25■□□□□ 0.99
HMGN1-209ENST00000463631 IRX3P78415 501 aaPredicted RBP21.25■□□□□ 0.99
HMGN1-209ENST00000463631 G3BP1Q13283 466 aaKnown RBP eCLIP21.25■□□□□ 0.99
HMGN1-209ENST00000463631 GDF15Q99988 308 aa21.25■□□□□ 0.99
HMGN1-209ENST00000463631 NBPF3Q9H094 633 aa21.25■□□□□ 0.99
HMGN1-209ENST00000463631 DNAJC18Q9H819 358 aa21.25■□□□□ 0.99
HMGN1-209ENST00000463631 FLT1P17948 1338 aa21.25■□□□□ 0.99
HMGN1-209ENST00000463631 SOX1O00570 391 aaPredicted RBP21.24■□□□□ 0.99
HMGN1-209ENST00000463631 XRCC5P13010 732 aaKnown RBP21.24■□□□□ 0.99
HMGN1-209ENST00000463631 BMP8BP34820 402 aa21.24■□□□□ 0.99
HMGN1-209ENST00000463631 MNX1P50219 401 aaPredicted RBP21.24■□□□□ 0.99
HMGN1-209ENST00000463631 NAA16Q6N069 864 aaPredicted RBP21.24■□□□□ 0.99
HMGN1-209ENST00000463631 SOCS4Q8WXH5 440 aa21.24■□□□□ 0.99
HMGN1-209ENST00000463631 TRIB2Q92519 343 aa21.24■□□□□ 0.99
HMGN1-209ENST00000463631 AATFQ9NY61 560 aaKnown RBP eCLIP21.24■□□□□ 0.99
HMGN1-209ENST00000463631 STAP2Q9UGK3 403 aa21.24■□□□□ 0.99
HMGN1-209ENST00000463631 OGDHLQ9ULD0 1010 aa21.24■□□□□ 0.99
HMGN1-209ENST00000463631 C19orf81C9J6K1 198 aa21.23■□□□□ 0.99
HMGN1-209ENST00000463631 TRIM32Q13049 653 aa21.23■□□□□ 0.99
HMGN1-209ENST00000463631 ATF7IPQ6VMQ6 1270 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms