RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	TBC1D9	Q6ZT07	1266 aa		13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	ERICH6	Q7L0X2	663 aa		13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	SLF2	Q8IX21	1173 aa		13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	CRISPLD2	Q9H0B8	497 aa		13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	AKAP2	Q9Y2D5	859 aa		13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	LAMA2	P24043	3122 aa	Known RBP	13.82	□□□□□ -0.2
PTPN7-204	ENST00000462815	PNMA6E	A0A0J9YXQ4	647 aa		13.81	□□□□□ -0.2
PTPN7-204	ENST00000462815	MAP4K4	O95819	1239 aa	Predicted RBP	13.81	□□□□□ -0.2
PTPN7-204	ENST00000462815	TRIM27	P14373	513 aa		13.81	□□□□□ -0.2
PTPN7-204	ENST00000462815	FAM110C	Q1W6H9	321 aa		13.81	□□□□□ -0.2
PTPN7-204	ENST00000462815	ANKRD13C	Q8N6S4	541 aa		13.81	□□□□□ -0.2
PTPN7-204	ENST00000462815	SPATA5	Q8NB90	893 aa		13.81	□□□□□ -0.2
PTPN7-204	ENST00000462815		A0A0C4DFX4	3053 aa		13.81	□□□□□ -0.2
PTPN7-204	ENST00000462815	DOCK3	Q8IZD9	2030 aa		13.8	□□□□□ -0.2
PTPN7-204	ENST00000462815	TNPO2	O14787	897 aa	Known RBP	13.8	□□□□□ -0.2
PTPN7-204	ENST00000462815	ZBTB7B	O15156	539 aa	Predicted RBP	13.8	□□□□□ -0.2
PTPN7-204	ENST00000462815	FARP2	O94887	1054 aa	Predicted RBP	13.8	□□□□□ -0.2
PTPN7-204	ENST00000462815	JAG1	P78504	1218 aa		13.8	□□□□□ -0.2
PTPN7-204	ENST00000462815	SH3D19	Q5HYK7	790 aa		13.8	□□□□□ -0.2
PTPN7-204	ENST00000462815	DPF3	Q92784	378 aa		13.8	□□□□□ -0.2
PTPN7-204	ENST00000462815	DNAJC18	Q9H819	358 aa		13.8	□□□□□ -0.2
PTPN7-204	ENST00000462815	CAP2	P40123	477 aa		13.79	□□□□□ -0.2
PTPN7-204	ENST00000462815	MNX1	P50219	401 aa	Predicted RBP	13.79	□□□□□ -0.2
PTPN7-204	ENST00000462815	SPP2	Q13103	211 aa		13.79	□□□□□ -0.2
PTPN7-204	ENST00000462815	ADGRA1	Q86SQ6	560 aa		13.79	□□□□□ -0.2
PTPN7-204	ENST00000462815	METTL16	Q86W50	562 aa	Known RBP	13.79	□□□□□ -0.2
PTPN7-204	ENST00000462815	ZNF280C	Q8ND82	737 aa		13.79	□□□□□ -0.2
PTPN7-204	ENST00000462815	SMCR8	Q8TEV9	937 aa	Predicted RBP	13.79	□□□□□ -0.2
PTPN7-204	ENST00000462815	HTATIP2	Q9BUP3	242 aa		13.79	□□□□□ -0.2
PTPN7-204	ENST00000462815	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
PTPN7-204	ENST00000462815	BIN2	Q9UBW5	565 aa	Predicted RBP	13.79	□□□□□ -0.2
PTPN7-204	ENST00000462815	GJD2	Q9UKL4	321 aa		13.79	□□□□□ -0.2
PTPN7-204	ENST00000462815	HMGCS2	P54868	508 aa		13.78	□□□□□ -0.2
PTPN7-204	ENST00000462815	POLA2	Q14181	598 aa		13.78	□□□□□ -0.2
PTPN7-204	ENST00000462815	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.78	□□□□□ -0.2
PTPN7-204	ENST00000462815	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.78	□□□□□ -0.2
PTPN7-204	ENST00000462815	NEUROD6	Q96NK8	337 aa		13.78	□□□□□ -0.2
PTPN7-204	ENST00000462815	DEFB118	Q96PH6	123 aa		13.78	□□□□□ -0.2
PTPN7-204	ENST00000462815	MYO5A	Q9Y4I1	1855 aa	Known RBP	13.78	□□□□□ -0.2
PTPN7-204	ENST00000462815	BCAR3	O75815	825 aa		13.77	□□□□□ -0.21
PTPN7-204	ENST00000462815	GNAI2	P04899	355 aa		13.77	□□□□□ -0.21
PTPN7-204	ENST00000462815	GSTO1	P78417	241 aa		13.77	□□□□□ -0.21
PTPN7-204	ENST00000462815	POTEE	Q6S8J3	1075 aa		13.77	□□□□□ -0.21
PTPN7-204	ENST00000462815	ATF7IP	Q6VMQ6	1270 aa		13.77	□□□□□ -0.21
PTPN7-204	ENST00000462815	DIS3L	Q8TF46	1054 aa	Known RBP	13.77	□□□□□ -0.21
PTPN7-204	ENST00000462815	WDR18	Q9BV38	432 aa		13.77	□□□□□ -0.21
PTPN7-204	ENST00000462815	TBC1D2	Q9BYX2	928 aa		13.77	□□□□□ -0.21
PTPN7-204	ENST00000462815	ASCC2	Q9H1I8	757 aa	Predicted RBP	13.77	□□□□□ -0.21
PTPN7-204	ENST00000462815	MORF4L1	Q9UBU8	362 aa		13.77	□□□□□ -0.21
PTPN7-204	ENST00000462815	HERC5	Q9UII4	1024 aa	Known RBP	13.77	□□□□□ -0.21
PTPN7-204	ENST00000462815	PNMA3	Q9UL41	463 aa		13.77	□□□□□ -0.21
PTPN7-204	ENST00000462815	FLT1	P17948	1338 aa		13.76	□□□□□ -0.21
PTPN7-204	ENST00000462815	USP17L5	A8MUK1	530 aa		13.76	□□□□□ -0.21
PTPN7-204	ENST00000462815	LDHC	P07864	332 aa		13.76	□□□□□ -0.21
PTPN7-204	ENST00000462815	CAPN2	P17655	700 aa		13.76	□□□□□ -0.21
PTPN7-204	ENST00000462815	GCLC	P48506	637 aa	Predicted RBP	13.76	□□□□□ -0.21
PTPN7-204	ENST00000462815	PPP4C	P60510	307 aa		13.76	□□□□□ -0.21
PTPN7-204	ENST00000462815	TRIM32	Q13049	653 aa		13.76	□□□□□ -0.21
PTPN7-204	ENST00000462815	TEX11	Q8IYF3	940 aa		13.76	□□□□□ -0.21
PTPN7-204	ENST00000462815	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	13.76	□□□□□ -0.21
PTPN7-204	ENST00000462815	GPR108	Q9NPR9	543 aa		13.76	□□□□□ -0.21
PTPN7-204	ENST00000462815	RAI14	Q9P0K7	980 aa		13.76	□□□□□ -0.21
PTPN7-204	ENST00000462815	DDX60L	Q5H9U9	1706 aa	Known RBP	13.76	□□□□□ -0.21
PTPN7-204	ENST00000462815	SOX1	O00570	391 aa	Predicted RBP	13.75	□□□□□ -0.21
PTPN7-204	ENST00000462815	PEX10	O60683	326 aa		13.75	□□□□□ -0.21
PTPN7-204	ENST00000462815	CYP2E1	P05181	493 aa	Predicted RBP	13.75	□□□□□ -0.21
PTPN7-204	ENST00000462815	UQCRFS1P1	P0C7P4	283 aa		13.75	□□□□□ -0.21
PTPN7-204	ENST00000462815	TNNI3K	Q59H18	835 aa		13.75	□□□□□ -0.21
PTPN7-204	ENST00000462815	MAP3K21	Q5TCX8	1036 aa		13.75	□□□□□ -0.21
PTPN7-204	ENST00000462815	SSH3	Q8TE77	659 aa		13.75	□□□□□ -0.21
PTPN7-204	ENST00000462815	COA7	Q96BR5	231 aa		13.75	□□□□□ -0.21
PTPN7-204	ENST00000462815	DBNDD2	Q9BQY9	259 aa		13.75	□□□□□ -0.21
PTPN7-204	ENST00000462815	TXNRD2	Q9NNW7	524 aa		13.75	□□□□□ -0.21
PTPN7-204	ENST00000462815	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
PTPN7-204	ENST00000462815	PI4KB	Q9UBF8	816 aa		13.75	□□□□□ -0.21
PTPN7-204	ENST00000462815	FPGT-TNNI3K	V9GXZ4	949 aa		13.75	□□□□□ -0.21
PTPN7-204	ENST00000462815		A0A1W2PPC1	479 aa		13.74	□□□□□ -0.21
PTPN7-204	ENST00000462815	CCER2	I3L3R5	266 aa		13.74	□□□□□ -0.21
PTPN7-204	ENST00000462815	HMGCR	P04035	888 aa		13.74	□□□□□ -0.21
PTPN7-204	ENST00000462815	HOXA7	P31268	230 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN7-204	ENST00000462815	BACE1	P56817	501 aa		13.74	□□□□□ -0.21
PTPN7-204	ENST00000462815	MTMR2	Q13614	643 aa		13.74	□□□□□ -0.21
PTPN7-204	ENST00000462815	TMEM57	Q8N5G2	664 aa		13.74	□□□□□ -0.21
PTPN7-204	ENST00000462815	TRIB2	Q92519	343 aa		13.74	□□□□□ -0.21
PTPN7-204	ENST00000462815	PAWR	Q96IZ0	340 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-204	ENST00000462815	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN7-204	ENST00000462815	DHX36	Q9H2U1	1008 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-204	ENST00000462815	SNRK	Q9NRH2	765 aa		13.74	□□□□□ -0.21
PTPN7-204	ENST00000462815	NR2E3	Q9Y5X4	410 aa		13.74	□□□□□ -0.21
PTPN7-204	ENST00000462815	UNC80	Q8N2C7	3258 aa		13.74	□□□□□ -0.21
PTPN7-204	ENST00000462815	TFRC	P02786	760 aa	Known RBP	13.73	□□□□□ -0.21
PTPN7-204	ENST00000462815	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
PTPN7-204	ENST00000462815	GORAB	Q5T7V8	394 aa		13.73	□□□□□ -0.21
PTPN7-204	ENST00000462815	NAA16	Q6N069	864 aa	Predicted RBP	13.73	□□□□□ -0.21
PTPN7-204	ENST00000462815	ANKLE1	Q8NAG6	615 aa		13.73	□□□□□ -0.21
PTPN7-204	ENST00000462815	USP6NL	Q92738	828 aa		13.73	□□□□□ -0.21
PTPN7-204	ENST00000462815	CLUAP1	Q96AJ1	413 aa		13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms