RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 SSH3Q8TE77 659 aa19.79■□□□□ 0.76
COL7A1-204ENST00000462475 GPR108Q9NPR9 543 aa19.79■□□□□ 0.76
COL7A1-204ENST00000462475 BIN2Q9UBW5 565 aaPredicted RBP19.79■□□□□ 0.76
COL7A1-204ENST00000462475 MAST2Q6P0Q8 1798 aa19.78■□□□□ 0.76
COL7A1-204ENST00000462475 SPP2Q13103 211 aa19.78■□□□□ 0.76
COL7A1-204ENST00000462475 ADGRA1Q86SQ6 560 aa19.78■□□□□ 0.76
COL7A1-204ENST00000462475 SLAIN1Q8ND83 568 aa19.78■□□□□ 0.76
COL7A1-204ENST00000462475 AATFQ9NY61 560 aaKnown RBP eCLIP19.78■□□□□ 0.76
COL7A1-204ENST00000462475 TNPO2O14787 897 aaKnown RBP19.77■□□□□ 0.76
COL7A1-204ENST00000462475 SURF6O75683 361 aaKnown RBP19.77■□□□□ 0.76
COL7A1-204ENST00000462475 GJB1P08034 283 aa19.77■□□□□ 0.76
COL7A1-204ENST00000462475 CAP2P40123 477 aa19.77■□□□□ 0.76
COL7A1-204ENST00000462475 GJA8P48165 433 aa19.77■□□□□ 0.76
COL7A1-204ENST00000462475 FLT3LGP49771 235 aa19.77■□□□□ 0.76
COL7A1-204ENST00000462475 UBXN2AP68543 259 aa19.77■□□□□ 0.76
COL7A1-204ENST00000462475 ATP8B2P98198 1209 aa19.77■□□□□ 0.76
COL7A1-204ENST00000462475 NAA16Q6N069 864 aaPredicted RBP19.77■□□□□ 0.76
COL7A1-204ENST00000462475 ANKRD13CQ8N6S4 541 aa19.77■□□□□ 0.76
COL7A1-204ENST00000462475 ZNF280CQ8ND82 737 aa19.77■□□□□ 0.76
COL7A1-204ENST00000462475 RNF208Q9H0X6 261 aa19.77■□□□□ 0.76
COL7A1-204ENST00000462475 MGAMO43451 1857 aa19.77■□□□□ 0.76
COL7A1-204ENST00000462475 H0YGN5 161 aa19.76■□□□□ 0.75
COL7A1-204ENST00000462475 ADCY3O60266 1144 aa19.76■□□□□ 0.75
COL7A1-204ENST00000462475 CYP2E1P05181 493 aaPredicted RBP19.76■□□□□ 0.75
COL7A1-204ENST00000462475 ELNP15502 786 aa19.76■□□□□ 0.75
COL7A1-204ENST00000462475 HMGCS2P54868 508 aa19.76■□□□□ 0.75
COL7A1-204ENST00000462475 CCDC158Q5M9N0 1113 aa19.76■□□□□ 0.75
COL7A1-204ENST00000462475 PROCA1Q8NCQ7 364 aaPredicted RBP19.76■□□□□ 0.75
COL7A1-204ENST00000462475 NKX2-3Q8TAU0 364 aa19.76■□□□□ 0.75
COL7A1-204ENST00000462475 NOL10Q9BSC4 688 aaKnown RBP19.76■□□□□ 0.75
COL7A1-204ENST00000462475 UNC93B1Q9H1C4 597 aa19.76■□□□□ 0.75
COL7A1-204ENST00000462475 HERC5Q9UII4 1024 aaKnown RBP19.76■□□□□ 0.75
COL7A1-204ENST00000462475 LOC285556D6RIA3 1793 aa19.75■□□□□ 0.75
COL7A1-204ENST00000462475 CEP290O15078 2479 aa19.75■□□□□ 0.75
COL7A1-204ENST00000462475 SIPA1L1O43166 1804 aa19.75■□□□□ 0.75
COL7A1-204ENST00000462475 RLBP1P12271 317 aa19.75■□□□□ 0.75
COL7A1-204ENST00000462475 HNRNPUQ00839 825 aaKnown RBP eCLIP19.75■□□□□ 0.75
COL7A1-204ENST00000462475 UBE2Q1Q7Z7E8 422 aa19.75■□□□□ 0.75
COL7A1-204ENST00000462475 MAPKAPK5Q8IW41 473 aa19.75■□□□□ 0.75
COL7A1-204ENST00000462475 FTSJ3Q8IY81 847 aaKnown RBP19.75■□□□□ 0.75
COL7A1-204ENST00000462475 DNAJC18Q9H819 358 aa19.75■□□□□ 0.75
COL7A1-204ENST00000462475 TLR7Q9NYK1 1049 aaKnown RBP19.75■□□□□ 0.75
COL7A1-204ENST00000462475 PNMA3Q9UL41 463 aa19.75■□□□□ 0.75
COL7A1-204ENST00000462475 COLQQ9Y215 455 aaPredicted RBP19.75■□□□□ 0.75
COL7A1-204ENST00000462475 FLT1P17948 1338 aa19.75■□□□□ 0.75
COL7A1-204ENST00000462475 USP17L5A8MUK1 530 aa19.74■□□□□ 0.75
COL7A1-204ENST00000462475 BAG3O95817 575 aa19.74■□□□□ 0.75
COL7A1-204ENST00000462475 INHAP05111 366 aa19.74■□□□□ 0.75
COL7A1-204ENST00000462475 ZAP70P43403 619 aa19.74■□□□□ 0.75
COL7A1-204ENST00000462475 PPP4CP60510 307 aa19.74■□□□□ 0.75
COL7A1-204ENST00000462475 FAM110CQ1W6H9 321 aa19.74■□□□□ 0.75
COL7A1-204ENST00000462475 ITPRIPQ8IWB1 547 aa19.74■□□□□ 0.75
COL7A1-204ENST00000462475 U2AF1L4Q8WU68 220 aaKnown RBP19.74■□□□□ 0.75
COL7A1-204ENST00000462475 TGFBRAP1Q8WUH2 860 aa19.74■□□□□ 0.75
COL7A1-204ENST00000462475 TBC1D2Q9BYX2 928 aa19.74■□□□□ 0.75
COL7A1-204ENST00000462475 PIH1D3Q9NQM4 214 aaKnown RBP19.74■□□□□ 0.75
COL7A1-204ENST00000462475 PI4KBQ9UBF8 816 aa19.74■□□□□ 0.75
COL7A1-204ENST00000462475 DBNLQ9UJU6 430 aaKnown RBP19.74■□□□□ 0.75
COL7A1-204ENST00000462475 PLCG2P16885 1265 aa19.73■□□□□ 0.75
COL7A1-204ENST00000462475 FXR1P51114 621 aaKnown RBP eCLIP19.73■□□□□ 0.75
COL7A1-204ENST00000462475 JAG1P78504 1218 aa19.73■□□□□ 0.75
COL7A1-204ENST00000462475 IRF5Q13568 498 aa19.73■□□□□ 0.75
COL7A1-204ENST00000462475 ZNF512BQ96KM6 892 aaPredicted RBP19.73■□□□□ 0.75
COL7A1-204ENST00000462475 DHX36Q9H2U1 1008 aaKnown RBP19.73■□□□□ 0.75
COL7A1-204ENST00000462475 TAOK2Q9UL54 1235 aa19.73■□□□□ 0.75
COL7A1-204ENST00000462475 NOP58Q9Y2X3 529 aaKnown RBP19.73■□□□□ 0.75
COL7A1-204ENST00000462475 ATAD5Q96QE3 1844 aa19.73■□□□□ 0.75
COL7A1-204ENST00000462475 ZBTB7BO15156 539 aaPredicted RBP19.72■□□□□ 0.75
COL7A1-204ENST00000462475 SHROOM1Q2M3G4 852 aaPredicted RBP19.72■□□□□ 0.75
COL7A1-204ENST00000462475 SH3D19Q5HYK7 790 aa19.72■□□□□ 0.75
COL7A1-204ENST00000462475 PXYLP1Q8TE99 480 aa19.72■□□□□ 0.75
COL7A1-204ENST00000462475 CCDC8Q9H0W5 538 aaPredicted RBP19.72■□□□□ 0.75
COL7A1-204ENST00000462475 ASCC2Q9H1I8 757 aaPredicted RBP19.72■□□□□ 0.75
COL7A1-204ENST00000462475 RANBP2P49792 3224 aaKnown RBP19.71■□□□□ 0.75
COL7A1-204ENST00000462475 DYNLL1P63167 89 aaKnown RBP19.71■□□□□ 0.75
COL7A1-204ENST00000462475 MTMR2Q13614 643 aa19.71■□□□□ 0.75
COL7A1-204ENST00000462475 DPF3Q92784 378 aa19.71■□□□□ 0.75
COL7A1-204ENST00000462475 COA7Q96BR5 231 aa19.71■□□□□ 0.75
COL7A1-204ENST00000462475 EAF2Q96CJ1 260 aaPredicted RBP19.71■□□□□ 0.75
COL7A1-204ENST00000462475 AS3MTQ9HBK9 375 aa19.71■□□□□ 0.75
COL7A1-204ENST00000462475 PALD1Q9ULE6 856 aa19.71■□□□□ 0.75
COL7A1-204ENST00000462475 FARP2O94887 1054 aaPredicted RBP19.7■□□□□ 0.74
COL7A1-204ENST00000462475 GDF11O95390 407 aa19.7■□□□□ 0.74
COL7A1-204ENST00000462475 GCLCP48506 637 aaPredicted RBP19.7■□□□□ 0.74
COL7A1-204ENST00000462475 PABPC4Q13310 644 aaKnown RBP eCLIP19.7■□□□□ 0.74
COL7A1-204ENST00000462475 METTL16Q86W50 562 aaKnown RBP19.7■□□□□ 0.74
COL7A1-204ENST00000462475 WDR18Q9BV38 432 aa19.7■□□□□ 0.74
COL7A1-204ENST00000462475 SAP30BPQ9UHR5 308 aaKnown RBP19.7■□□□□ 0.74
COL7A1-204ENST00000462475 SGPL1O95470 568 aa19.69■□□□□ 0.74
COL7A1-204ENST00000462475 ASNSP08243 561 aa19.69■□□□□ 0.74
COL7A1-204ENST00000462475 CEP85Q6P2H3 762 aa19.69■□□□□ 0.74
COL7A1-204ENST00000462475 MIER1Q8N108 512 aa19.69■□□□□ 0.74
COL7A1-204ENST00000462475 CRACR2BQ8N4Y2 399 aaPredicted RBP19.69■□□□□ 0.74
COL7A1-204ENST00000462475 NDUFB9Q9Y6M9 179 aa19.69■□□□□ 0.74
COL7A1-204ENST00000462475 IDH1O75874 414 aaKnown RBP19.68■□□□□ 0.74
COL7A1-204ENST00000462475 CYP7A1P22680 504 aa19.68■□□□□ 0.74
COL7A1-204ENST00000462475 BACE1P56817 501 aa19.68■□□□□ 0.74
COL7A1-204ENST00000462475 CHRDL2Q6WN34 429 aa19.68■□□□□ 0.74
COL7A1-204ENST00000462475 FOXP4Q8IVH2 680 aaPredicted RBP19.68■□□□□ 0.74
COL7A1-204ENST00000462475 DEFB118Q96PH6 123 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms