RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 EIF2AK2P19525 551 aaKnown RBP6.18□□□□□ -1.42
CSMD3-205ENST00000462254 GTF2F1P35269 517 aaKnown RBP eCLIP6.18□□□□□ -1.42
CSMD3-205ENST00000462254 FANCCQ00597 558 aa6.18□□□□□ -1.42
CSMD3-205ENST00000462254 FMR1Q06787 632 aaKnown RBP eCLIP6.18□□□□□ -1.42
CSMD3-205ENST00000462254 EHHADHQ08426 723 aa6.18□□□□□ -1.42
CSMD3-205ENST00000462254 GNL2Q13823 731 aaKnown RBP6.18□□□□□ -1.42
CSMD3-205ENST00000462254 PCSK7Q16549 785 aa6.18□□□□□ -1.42
CSMD3-205ENST00000462254 KANK3Q6NY19 840 aa6.18□□□□□ -1.42
CSMD3-205ENST00000462254 ELMSAN1Q6PJG2 1045 aa6.18□□□□□ -1.42
CSMD3-205ENST00000462254 BEND7Q8N7W2 519 aaPredicted RBP6.18□□□□□ -1.42
CSMD3-205ENST00000462254 TMC1Q8TDI8 760 aa6.18□□□□□ -1.42
CSMD3-205ENST00000462254 RNF34Q969K3 372 aa6.18□□□□□ -1.42
CSMD3-205ENST00000462254 LPIN3Q9BQK8 851 aa6.18□□□□□ -1.42
CSMD3-205ENST00000462254 SMG9Q9H0W8 520 aaKnown RBP6.18□□□□□ -1.42
CSMD3-205ENST00000462254 SUV39H2Q9H5I1 410 aa6.18□□□□□ -1.42
CSMD3-205ENST00000462254 CAPN10Q9HC96 672 aa6.18□□□□□ -1.42
CSMD3-205ENST00000462254 JPH1Q9HDC5 661 aaPredicted RBP6.18□□□□□ -1.42
CSMD3-205ENST00000462254 ABCA3Q99758 1704 aa6.18□□□□□ -1.42
CSMD3-205ENST00000462254 RGPD5Q99666 1765 aa6.18□□□□□ -1.42
CSMD3-205ENST00000462254 PHRF1Q9P1Y6 1649 aaKnown RBP6.17□□□□□ -1.42
CSMD3-205ENST00000462254 SHPRHQ149N8 1683 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 TREHO43280 583 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 RAB11FIP3O75154 756 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 RGS9O75916 674 aaPredicted RBP6.17□□□□□ -1.42
CSMD3-205ENST00000462254 KIF4AO95239 1232 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 ACPPP15309 386 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 CES1P23141 567 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 IRS1P35568 1242 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 GSK3AP49840 483 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 AFF1P51825 1210 aaKnown RBP6.17□□□□□ -1.42
CSMD3-205ENST00000462254 ATP11AP98196 1134 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 XPCQ01831 940 aaPredicted RBP6.17□□□□□ -1.42
CSMD3-205ENST00000462254 RBL2Q08999 1139 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 HYAL2Q12891 473 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 ORC1Q13415 861 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 GRIK5Q16478 980 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 TMC7Q7Z402 723 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 TMC4Q7Z404 712 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 PODNQ7Z5L7 613 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 PLD4Q96BZ4 506 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 TRIM11Q96F44 468 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 SCARF2Q96GP6 870 aaPredicted RBP6.17□□□□□ -1.42
CSMD3-205ENST00000462254 METTL14Q9HCE5 456 aaKnown RBP6.17□□□□□ -1.42
CSMD3-205ENST00000462254 MRS2Q9HD23 443 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 SALL4Q9UJQ4 1053 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 MKL2Q9ULH7 1088 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 POLR3AO14802 1390 aaPredicted RBP6.17□□□□□ -1.42
CSMD3-205ENST00000462254 MSH6P52701 1360 aa6.17□□□□□ -1.42
CSMD3-205ENST00000462254 USP6P35125 1406 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 EDC4Q6P2E9 1401 aaKnown RBP6.16□□□□□ -1.42
CSMD3-205ENST00000462254 PHF20L1A8MW92 1017 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 LILRB5O75023 590 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 PHACTR2O75167 634 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 PRPF40AO75400 957 aaKnown RBP6.16□□□□□ -1.42
CSMD3-205ENST00000462254 TRPA1O75762 1119 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 POLR3DP05423 398 aaPredicted RBP6.16□□□□□ -1.42
CSMD3-205ENST00000462254 NID1P14543 1247 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 SOGA3Q5TF21 947 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 USPL1Q5W0Q7 1092 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 ADAMTSL4Q6UY14 1074 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 CEP120Q8N960 986 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 SNX29Q8TEQ0 813 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 CITED4Q96RK1 184 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 NIF3L1Q9GZT8 377 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 C19orf44Q9H6X5 657 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 ZFYVE28Q9HCC9 887 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 PRDM6Q9NQX0 595 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 KTN1Q86UP2 1357 aaKnown RBP6.16□□□□□ -1.42
CSMD3-205ENST00000462254 PARD3Q8TEW0 1356 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 NPC1L1Q9UHC9 1359 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 SSH2Q76I76 1423 aa6.16□□□□□ -1.42
CSMD3-205ENST00000462254 GNB5O14775 395 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 SORBS3O60504 671 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 GHRHP01286 108 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 COL8A1P27658 744 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 PDE3BQ13370 1112 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 CNGB1Q14028 1251 aaPredicted RBP6.15□□□□□ -1.42
CSMD3-205ENST00000462254 NCAPG2Q86XI2 1143 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 PMFBP1Q8TBY8 1022 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 GPATCH3Q96I76 525 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 SPACA7Q96KW9 195 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 PLVAPQ9BX97 442 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 RASSF4Q9H2L5 321 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 PRKRIP1Q9H875 184 aaPredicted RBP6.15□□□□□ -1.42
CSMD3-205ENST00000462254 LATS2Q9NRM7 1088 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 FRRS1LQ9P0K9 344 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 PARP2Q9UGN5 583 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 PHLPP1O60346 1717 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 PEAK1Q9H792 1746 aa6.15□□□□□ -1.42
CSMD3-205ENST00000462254 ACEP12821 1306 aa6.15□□□□□ -1.43
CSMD3-205ENST00000462254 RGPD2P0DJD1 1756 aa6.15□□□□□ -1.43
CSMD3-205ENST00000462254 ANP32CO43423 234 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 ZNF76P36508 570 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 IGBP1P78318 339 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 DAB2P98082 770 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 PTPROQ16827 1216 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 CC2D1BQ5T0F9 858 aaKnown RBP6.14□□□□□ -1.43
CSMD3-205ENST00000462254 HDGFL2Q7Z4V5 671 aaPredicted RBP6.14□□□□□ -1.43
CSMD3-205ENST00000462254 NLGN1Q8N2Q7 840 aa6.14□□□□□ -1.43
CSMD3-205ENST00000462254 KCNB2Q92953 911 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms