RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 RSPO4Q2I0M5 234 aaPredicted RBP10.18□□□□□ -0.78
USP54-208ENST00000461520 FBXO11Q86XK2 927 aa10.18□□□□□ -0.78
USP54-208ENST00000461520 OR13H1Q8NG92 308 aa10.18□□□□□ -0.78
USP54-208ENST00000461520 SLC12A5Q9H2X9 1139 aa10.18□□□□□ -0.78
USP54-208ENST00000461520 PPP1R1BQ9UD71 204 aaPredicted RBP10.18□□□□□ -0.78
USP54-208ENST00000461520 SBF2Q86WG5 1849 aa10.18□□□□□ -0.78
USP54-208ENST00000461520 EDC4Q6P2E9 1401 aaKnown RBP10.17□□□□□ -0.78
USP54-208ENST00000461520 NINLQ9Y2I6 1382 aa10.17□□□□□ -0.78
USP54-208ENST00000461520 PEAK1Q9H792 1746 aa10.17□□□□□ -0.78
USP54-208ENST00000461520 SSFA2P28290 1259 aa10.17□□□□□ -0.78
USP54-208ENST00000461520 TTC39BQ5VTQ0 682 aaPredicted RBP10.17□□□□□ -0.78
USP54-208ENST00000461520 NME9Q86XW9 330 aa10.17□□□□□ -0.78
USP54-208ENST00000461520 DTWD1Q8N5C7 304 aa10.17□□□□□ -0.78
USP54-208ENST00000461520 TESK2Q96S53 571 aa10.17□□□□□ -0.78
USP54-208ENST00000461520 LRRC37A3O60309 1634 aa10.17□□□□□ -0.78
USP54-208ENST00000461520 BCL9O00512 1426 aa10.16□□□□□ -0.78
USP54-208ENST00000461520 RGPD3A6NKT7 1758 aaPredicted RBP10.16□□□□□ -0.78
USP54-208ENST00000461520 RGPD4Q7Z3J3 1758 aa10.16□□□□□ -0.78
USP54-208ENST00000461520 A0A1W2PP64 1363 aa10.16□□□□□ -0.78
USP54-208ENST00000461520 CCDC7Q96M83 1385 aa10.16□□□□□ -0.78
USP54-208ENST00000461520 USP54Q70EL1 1684 aa10.16□□□□□ -0.78
USP54-208ENST00000461520 ST20-MTHFSA0A0A6YYL1 179 aa10.16□□□□□ -0.78
USP54-208ENST00000461520 DEAF1O75398 565 aaPredicted RBP10.16□□□□□ -0.78
USP54-208ENST00000461520 NRG1Q02297 640 aaPredicted RBP10.16□□□□□ -0.78
USP54-208ENST00000461520 NKAPLQ5M9Q1 402 aa10.16□□□□□ -0.78
USP54-208ENST00000461520 HELQQ8TDG4 1101 aa10.16□□□□□ -0.78
USP54-208ENST00000461520 GTF3C2Q8WUA4 911 aaPredicted RBP10.16□□□□□ -0.78
USP54-208ENST00000461520 RBSNQ9H1K0 784 aa10.16□□□□□ -0.78
USP54-208ENST00000461520 SPON1Q9HCB6 807 aa10.16□□□□□ -0.78
USP54-208ENST00000461520 TRIM33Q9UPN9 1127 aa10.16□□□□□ -0.78
USP54-208ENST00000461520 WNK3Q9BYP7 1800 aa10.16□□□□□ -0.78
USP54-208ENST00000461520 EXOC5O00471 708 aa10.15□□□□□ -0.78
USP54-208ENST00000461520 PLSCR1O15162 318 aa10.15□□□□□ -0.78
USP54-208ENST00000461520 KCNQ2O43526 872 aa10.15□□□□□ -0.78
USP54-208ENST00000461520 CYP2E1P05181 493 aaPredicted RBP10.15□□□□□ -0.78
USP54-208ENST00000461520 MTMR3Q13615 1198 aa10.15□□□□□ -0.78
USP54-208ENST00000461520 TXNRD3Q86VQ6 643 aa10.15□□□□□ -0.78
USP54-208ENST00000461520 IL22RA1Q8N6P7 574 aa10.15□□□□□ -0.78
USP54-208ENST00000461520 MARCH10Q8NA82 808 aaPredicted RBP10.15□□□□□ -0.78
USP54-208ENST00000461520 HYAL2Q12891 473 aa10.14□□□□□ -0.79
USP54-208ENST00000461520 EDEM1Q92611 657 aa10.14□□□□□ -0.79
USP54-208ENST00000461520 ABI2Q9NYB9 513 aaPredicted RBP10.14□□□□□ -0.79
USP54-208ENST00000461520 CASZ1Q86V15 1759 aa10.14□□□□□ -0.79
USP54-208ENST00000461520 ATP11AP98196 1134 aa10.13□□□□□ -0.79
USP54-208ENST00000461520 DNM1Q05193 864 aaKnown RBP10.13□□□□□ -0.79
USP54-208ENST00000461520 ELP3Q9H9T3 547 aa10.13□□□□□ -0.79
USP54-208ENST00000461520 TMEM63CQ9P1W3 806 aa10.13□□□□□ -0.79
USP54-208ENST00000461520 RGPD5Q99666 1765 aa10.13□□□□□ -0.79
USP54-208ENST00000461520 MPSTP25325 297 aa10.12□□□□□ -0.79
USP54-208ENST00000461520 TMF1P82094 1093 aa10.12□□□□□ -0.79
USP54-208ENST00000461520 NOM1Q5C9Z4 860 aaKnown RBP10.12□□□□□ -0.79
USP54-208ENST00000461520 PTF1AQ7RTS3 328 aa10.12□□□□□ -0.79
USP54-208ENST00000461520 ANKRD24Q8TF21 1146 aa10.12□□□□□ -0.79
USP54-208ENST00000461520 NLRP2Q9NX02 1062 aa10.12□□□□□ -0.79
USP54-208ENST00000461520 TNS2Q63HR2 1409 aa10.12□□□□□ -0.79
USP54-208ENST00000461520 ANKRD36BQ8N2N9 1353 aa10.12□□□□□ -0.79
USP54-208ENST00000461520 MYOM1P52179 1685 aa10.12□□□□□ -0.79
USP54-208ENST00000461520 A6NHS1 94 aa10.11□□□□□ -0.79
USP54-208ENST00000461520 DYRK3O43781 588 aa10.11□□□□□ -0.79
USP54-208ENST00000461520 IL2RBP14784 551 aa10.11□□□□□ -0.79
USP54-208ENST00000461520 PHLDB3Q6NSJ2 640 aa10.11□□□□□ -0.79
USP54-208ENST00000461520 ZNF438Q7Z4V0 828 aa10.11□□□□□ -0.79
USP54-208ENST00000461520 IP6K1Q92551 441 aa10.11□□□□□ -0.79
USP54-208ENST00000461520 COG3Q96JB2 828 aa10.11□□□□□ -0.79
USP54-208ENST00000461520 SPACA7Q96KW9 195 aa10.11□□□□□ -0.79
USP54-208ENST00000461520 GGNBP2Q9H3C7 697 aa10.11□□□□□ -0.79
USP54-208ENST00000461520 CNTN3Q9P232 1028 aa10.11□□□□□ -0.79
USP54-208ENST00000461520 TIMELESSQ9UNS1 1208 aa10.11□□□□□ -0.79
USP54-208ENST00000461520 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.11□□□□□ -0.79
USP54-208ENST00000461520 USP47Q96K76 1375 aa10.11□□□□□ -0.79
USP54-208ENST00000461520 DLL1O00548 723 aa10.1□□□□□ -0.79
USP54-208ENST00000461520 EIF1AXP47813 144 aaKnown RBP10.1□□□□□ -0.79
USP54-208ENST00000461520 IREB2P48200 963 aaKnown RBP10.1□□□□□ -0.79
USP54-208ENST00000461520 CEP135Q66GS9 1140 aa10.1□□□□□ -0.79
USP54-208ENST00000461520 PDE12Q6L8Q7 609 aaKnown RBP10.1□□□□□ -0.79
USP54-208ENST00000461520 IGF2-ASQ6U949 168 aa10.1□□□□□ -0.79
USP54-208ENST00000461520 WFDC12Q8WWY7 111 aa10.1□□□□□ -0.79
USP54-208ENST00000461520 PDGFDQ9GZP0 370 aaPredicted RBP10.1□□□□□ -0.79
USP54-208ENST00000461520 LACRTQ9GZZ8 138 aa10.1□□□□□ -0.79
USP54-208ENST00000461520 RASSF4Q9H2L5 321 aa10.1□□□□□ -0.79
USP54-208ENST00000461520 LTN1O94822 1766 aa10.1□□□□□ -0.79
USP54-208ENST00000461520 ZBTB7AO95365 584 aa10.09□□□□□ -0.79
USP54-208ENST00000461520 PDGFAP04085 211 aa10.09□□□□□ -0.79
USP54-208ENST00000461520 C8orf34Q49A92 452 aa10.09□□□□□ -0.79
USP54-208ENST00000461520 ADAMTSL4Q6UY14 1074 aa10.09□□□□□ -0.79
USP54-208ENST00000461520 KANSL3Q9P2N6 904 aa10.09□□□□□ -0.79
USP54-208ENST00000461520 CLSPNQ9HAW4 1339 aa10.08□□□□□ -0.8
USP54-208ENST00000461520 KIF4AO95239 1232 aa10.08□□□□□ -0.8
USP54-208ENST00000461520 NOS3P29474 1203 aa10.08□□□□□ -0.8
USP54-208ENST00000461520 SETDB1Q15047 1291 aa10.08□□□□□ -0.8
USP54-208ENST00000461520 NCAPG2Q86XI2 1143 aa10.08□□□□□ -0.8
USP54-208ENST00000461520 TP53INP1Q96A56 240 aa10.08□□□□□ -0.8
USP54-208ENST00000461520 PPME1Q9Y570 386 aa10.08□□□□□ -0.8
USP54-208ENST00000461520 MAP3K19Q56UN5 1328 aa10.07□□□□□ -0.8
USP54-208ENST00000461520 UTRNP46939 3433 aa10.07□□□□□ -0.8
USP54-208ENST00000461520 CDC25BP30305 580 aa10.07□□□□□ -0.8
USP54-208ENST00000461520 HOXC9P31274 260 aa10.07□□□□□ -0.8
USP54-208ENST00000461520 AMPHP49418 695 aa10.07□□□□□ -0.8
USP54-208ENST00000461520 TXNRD1Q16881 649 aa10.07□□□□□ -0.8
USP54-208ENST00000461520 CEP120Q8N960 986 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms