RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 NOP56O00567 594 aaKnown RBP19.22■□□□□ 0.67
PTPRF-209ENST00000438120 CFBP00751 764 aa19.22■□□□□ 0.67
PTPRF-209ENST00000438120 ANKS4BQ8N8V4 417 aa19.22■□□□□ 0.67
PTPRF-209ENST00000438120 RNF34Q969K3 372 aa19.22■□□□□ 0.67
PTPRF-209ENST00000438120 GTPBP4Q9BZE4 634 aaKnown RBP19.22■□□□□ 0.67
PTPRF-209ENST00000438120 TSGA10Q9BZW7 698 aa19.22■□□□□ 0.67
PTPRF-209ENST00000438120 ADCY7P51828 1080 aa19.21■□□□□ 0.67
PTPRF-209ENST00000438120 CDC37L1Q7L3B6 337 aa19.21■□□□□ 0.67
PTPRF-209ENST00000438120 CMTR1Q8N1G2 835 aaKnown RBP19.21■□□□□ 0.67
PTPRF-209ENST00000438120 WDR66Q8TBY9 1149 aa19.21■□□□□ 0.67
PTPRF-209ENST00000438120 LRWD1Q9UFC0 647 aa19.21■□□□□ 0.67
PTPRF-209ENST00000438120 H0YIN7 160 aa19.21■□□□□ 0.67
PTPRF-209ENST00000438120 UTP14CQ5TAP6 766 aaKnown RBP19.21■□□□□ 0.67
PTPRF-209ENST00000438120 ATL3Q6DD88 541 aa19.21■□□□□ 0.67
PTPRF-209ENST00000438120 SMC6Q96SB8 1091 aa19.21■□□□□ 0.67
PTPRF-209ENST00000438120 BLZF1Q9H2G9 400 aa19.21■□□□□ 0.67
PTPRF-209ENST00000438120 UHRF1BP1Q6BDS2 1440 aa19.21■□□□□ 0.67
PTPRF-209ENST00000438120 GADD45BO75293 160 aaPredicted RBP19.21■□□□□ 0.67
PTPRF-209ENST00000438120 STRN3Q13033 797 aa19.21■□□□□ 0.67
PTPRF-209ENST00000438120 TRPC3Q13507 836 aa19.21■□□□□ 0.67
PTPRF-209ENST00000438120 KIFC2Q96AC6 838 aa19.21■□□□□ 0.67
PTPRF-209ENST00000438120 IFT74Q96LB3 600 aa19.21■□□□□ 0.67
PTPRF-209ENST00000438120 KIFAP3Q92845 792 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 VPS54Q9P1Q0 977 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 ATP2A2P16615 1042 aaKnown RBP19.2■□□□□ 0.66
PTPRF-209ENST00000438120 HERC4Q5GLZ8 1057 aaPredicted RBP19.2■□□□□ 0.66
PTPRF-209ENST00000438120 KRT40Q6A162 431 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 TAB2Q9NYJ8 693 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 FANCCQ00597 558 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 PPP2R3AQ06190 1150 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 CCDC121Q6ZUS5 278 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 GTF3C6Q969F1 213 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 TTC14Q96N46 770 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 PAK1Q13153 545 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 CALUO43852 315 aaPredicted RBP19.2■□□□□ 0.66
PTPRF-209ENST00000438120 EVCP57679 992 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 NONOQ15233 471 aaKnown RBP eCLIP19.2■□□□□ 0.66
PTPRF-209ENST00000438120 ASIC2Q16515 512 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 CFAP58Q5T655 872 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 MICALL1Q8N3F8 863 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 C17orf53Q8N3J3 647 aaPredicted RBP19.2■□□□□ 0.66
PTPRF-209ENST00000438120 TRIM31Q9BZY9 425 aa19.2■□□□□ 0.66
PTPRF-209ENST00000438120 BIVM-ERCC5R4GMW8 1640 aa19.19■□□□□ 0.66
PTPRF-209ENST00000438120 ZNF202O95125 648 aa19.19■□□□□ 0.66
PTPRF-209ENST00000438120 TFAP4Q01664 338 aa19.19■□□□□ 0.66
PTPRF-209ENST00000438120 INF2Q27J81 1249 aa19.19■□□□□ 0.66
PTPRF-209ENST00000438120 PSMB7Q99436 277 aa19.19■□□□□ 0.66
PTPRF-209ENST00000438120 TUBB4AP04350 444 aa19.19■□□□□ 0.66
PTPRF-209ENST00000438120 MYCT1Q8N699 235 aa19.19■□□□□ 0.66
PTPRF-209ENST00000438120 CLSTN2Q9H4D0 955 aa19.19■□□□□ 0.66
PTPRF-209ENST00000438120 ABCC10Q5T3U5 1492 aa19.19■□□□□ 0.66
PTPRF-209ENST00000438120 KCNQ3O43525 872 aa19.19■□□□□ 0.66
PTPRF-209ENST00000438120 TIGD1Q96MW7 591 aa19.19■□□□□ 0.66
PTPRF-209ENST00000438120 HPDP32754 393 aaPredicted RBP19.18■□□□□ 0.66
PTPRF-209ENST00000438120 LLPHQ9BRT6 129 aaKnown RBP19.18■□□□□ 0.66
PTPRF-209ENST00000438120 CETN3O15182 167 aa19.18■□□□□ 0.66
PTPRF-209ENST00000438120 U2AF2P26368 475 aaKnown RBP eCLIP19.18■□□□□ 0.669e-12■■□□□ 11.6
PTPRF-209ENST00000438120 DDX23Q9BUQ8 820 aaKnown RBP19.18■□□□□ 0.66
PTPRF-209ENST00000438120 CUTAO60888 179 aa19.18■□□□□ 0.66
PTPRF-209ENST00000438120 TRMT44Q8IYL2 757 aaKnown RBP19.18■□□□□ 0.66
PTPRF-209ENST00000438120 E7EVH7 732 aa19.18■□□□□ 0.66
PTPRF-209ENST00000438120 CDCA7Q9BWT1 371 aaPredicted RBP19.18■□□□□ 0.66
PTPRF-209ENST00000438120 IVLP07476 585 aa19.18■□□□□ 0.66
PTPRF-209ENST00000438120 CALCRLQ16602 461 aa19.18■□□□□ 0.66
PTPRF-209ENST00000438120 CBX8Q9HC52 389 aa19.18■□□□□ 0.66
PTPRF-209ENST00000438120 USTQ9Y2C2 406 aa19.18■□□□□ 0.66
PTPRF-209ENST00000438120 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.18■□□□□ 0.66
PTPRF-209ENST00000438120 JAKMIP2Q96AA8 810 aa19.17■□□□□ 0.66
PTPRF-209ENST00000438120 GPHNQ9NQX3 736 aaPredicted RBP19.17■□□□□ 0.66
PTPRF-209ENST00000438120 EDC4Q6P2E9 1401 aaKnown RBP19.17■□□□□ 0.66
PTPRF-209ENST00000438120 SORBS3O60504 671 aa19.17■□□□□ 0.66
PTPRF-209ENST00000438120 ARID4AP29374 1257 aaPredicted RBP19.17■□□□□ 0.66
PTPRF-209ENST00000438120 MAP7D1Q3KQU3 841 aa19.17■□□□□ 0.66
PTPRF-209ENST00000438120 SEC62Q99442 399 aaKnown RBP19.17■□□□□ 0.66
PTPRF-209ENST00000438120 E7EWF7 191 aa19.17■□□□□ 0.66
PTPRF-209ENST00000438120 CFAP157Q5JU67 520 aa19.17■□□□□ 0.66
PTPRF-209ENST00000438120 CYP26C1Q6V0L0 522 aa19.17■□□□□ 0.66
PTPRF-209ENST00000438120 IVNS1ABPQ9Y6Y0 642 aa19.17■□□□□ 0.66
PTPRF-209ENST00000438120 GCNT3O95395 438 aa19.17■□□□□ 0.66
PTPRF-209ENST00000438120 EIF4A1P60842 406 aaKnown RBP19.17■□□□□ 0.66
PTPRF-209ENST00000438120 TRIM6Q9C030 488 aaPredicted RBP19.17■□□□□ 0.66
PTPRF-209ENST00000438120 EIF4G3O43432 1585 aaKnown RBP19.17■□□□□ 0.66
PTPRF-209ENST00000438120 MAST3O60307 1309 aa19.17■□□□□ 0.66
PTPRF-209ENST00000438120 CCDC160A6NGH7 325 aa19.17■□□□□ 0.66
PTPRF-209ENST00000438120 PPP2R5DQ14738 602 aa19.16■□□□□ 0.66
PTPRF-209ENST00000438120 GTF2IP78347 998 aa19.16■□□□□ 0.66
PTPRF-209ENST00000438120 CCDC26Q8TAB7 109 aa19.16■□□□□ 0.66
PTPRF-209ENST00000438120 MROH5Q6ZUA9 1318 aa19.16■□□□□ 0.66
PTPRF-209ENST00000438120 KRT19P08727 400 aa19.16■□□□□ 0.66
PTPRF-209ENST00000438120 RDH13Q8NBN7 331 aa19.16■□□□□ 0.66
PTPRF-209ENST00000438120 NAPGQ99747 312 aaPredicted RBP19.16■□□□□ 0.66
PTPRF-209ENST00000438120 DNM3Q9UQ16 869 aa19.16■□□□□ 0.66
PTPRF-209ENST00000438120 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.16■□□□□ 0.66
PTPRF-209ENST00000438120 ERCC5P28715 1186 aaPredicted RBP19.16■□□□□ 0.66
PTPRF-209ENST00000438120 FAM204AQ9H8W3 233 aa19.16■□□□□ 0.66
PTPRF-209ENST00000438120 HOXB7P09629 217 aa19.16■□□□□ 0.66
PTPRF-209ENST00000438120 NBPF11Q86T75 865 aa19.16■□□□□ 0.66
PTPRF-209ENST00000438120 CEP57Q86XR8 500 aa19.16■□□□□ 0.66
PTPRF-209ENST00000438120 CABP7Q86V35 215 aa19.15■□□□□ 0.66
PTPRF-209ENST00000438120 MRPL44Q9H9J2 332 aaKnown RBP19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms