RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 DAGLAQ9Y4D2 1042 aa9.43□□□□□ -0.9
CCDC88A-206ENST00000430086 BPNT1O95861 308 aa9.42□□□□□ -0.9
CCDC88A-206ENST00000430086 IGLV1-40P01703 118 aa9.42□□□□□ -0.9
CCDC88A-206ENST00000430086 NFIAQ12857 509 aa9.42□□□□□ -0.9
CCDC88A-206ENST00000430086 NT5DC4Q86YG4 428 aa9.42□□□□□ -0.9
CCDC88A-206ENST00000430086 KCT2Q8NC54 265 aa9.42□□□□□ -0.9
CCDC88A-206ENST00000430086 ZNF507Q8TCN5 953 aa9.42□□□□□ -0.9
CCDC88A-206ENST00000430086 WNT10AQ9GZT5 417 aa9.42□□□□□ -0.9
CCDC88A-206ENST00000430086 PRKAG2Q9UGJ0 569 aa9.42□□□□□ -0.9
CCDC88A-206ENST00000430086 PRAMEF27A3QJZ7 478 aa9.41□□□□□ -0.9
CCDC88A-206ENST00000430086 TCF3P15923 654 aa9.41□□□□□ -0.9
CCDC88A-206ENST00000430086 RACK1P63244 317 aaKnown RBP9.41□□□□□ -0.9
CCDC88A-206ENST00000430086 PRSS36Q5K4E3 855 aa9.41□□□□□ -0.9
CCDC88A-206ENST00000430086 DBNDD2Q9BQY9 259 aa9.41□□□□□ -0.9
CCDC88A-206ENST00000430086 C1GALT1Q9NS00 363 aa9.41□□□□□ -0.9
CCDC88A-206ENST00000430086 PCDHGB7Q9Y5F8 929 aa9.41□□□□□ -0.9
CCDC88A-206ENST00000430086 ADAM23O75077 832 aa9.4□□□□□ -0.9
CCDC88A-206ENST00000430086 KIAA0825Q8IV33 1275 aa9.4□□□□□ -0.9
CCDC88A-206ENST00000430086 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.4□□□□□ -0.9
CCDC88A-206ENST00000430086 ZNF654Q8IZM8 581 aa9.4□□□□□ -0.9
CCDC88A-206ENST00000430086 SPON2Q9BUD6 331 aa9.4□□□□□ -0.9
CCDC88A-206ENST00000430086 NT5C1AQ9BXI3 368 aa9.4□□□□□ -0.9
CCDC88A-206ENST00000430086 IGSF5Q9NSI5 407 aa9.4□□□□□ -0.9
CCDC88A-206ENST00000430086 DYNC1LI2O43237 492 aaPredicted RBP9.39□□□□□ -0.91
CCDC88A-206ENST00000430086 ITGB7P26010 798 aa9.39□□□□□ -0.91
CCDC88A-206ENST00000430086 C9orf131Q5VYM1 1079 aa9.39□□□□□ -0.91
CCDC88A-206ENST00000430086 CDC37L1Q7L3B6 337 aa9.39□□□□□ -0.91
CCDC88A-206ENST00000430086 REC114Q7Z4M0 266 aa9.39□□□□□ -0.91
CCDC88A-206ENST00000430086 FBXO27Q8NI29 283 aa9.39□□□□□ -0.91
CCDC88A-206ENST00000430086 GATA6Q92908 595 aa9.39□□□□□ -0.91
CCDC88A-206ENST00000430086 SSU72Q9NP77 194 aaKnown RBP9.39□□□□□ -0.91
CCDC88A-206ENST00000430086 PRR36Q9H6K5 1346 aa9.38□□□□□ -0.91
CCDC88A-206ENST00000430086 GRK4P32298 578 aa9.38□□□□□ -0.91
CCDC88A-206ENST00000430086 CAP2P40123 477 aa9.38□□□□□ -0.91
CCDC88A-206ENST00000430086 ETF1P62495 437 aaKnown RBP9.38□□□□□ -0.91
CCDC88A-206ENST00000430086 PDE4BQ07343 736 aa9.38□□□□□ -0.91
CCDC88A-206ENST00000430086 CWF19L2Q2TBE0 894 aaKnown RBP9.38□□□□□ -0.91
CCDC88A-206ENST00000430086 ZAR1Q86SH2 424 aa9.38□□□□□ -0.91
CCDC88A-206ENST00000430086 PSMG3-AS1Q96PY0 264 aa9.38□□□□□ -0.91
CCDC88A-206ENST00000430086 RAD51AP2Q09MP3 1159 aa9.37□□□□□ -0.91
CCDC88A-206ENST00000430086 UBE3DQ7Z6J8 389 aa9.37□□□□□ -0.91
CCDC88A-206ENST00000430086 HID1Q8IV36 788 aa9.37□□□□□ -0.91
CCDC88A-206ENST00000430086 EAF1Q96JC9 268 aaPredicted RBP9.37□□□□□ -0.91
CCDC88A-206ENST00000430086 MFSD14AQ96MC6 490 aa9.37□□□□□ -0.91
CCDC88A-206ENST00000430086 TGIF2Q9GZN2 237 aa9.37□□□□□ -0.91
CCDC88A-206ENST00000430086 LGR6Q9HBX8 967 aa9.37□□□□□ -0.91
CCDC88A-206ENST00000430086 ADAM30Q9UKF2 790 aa9.37□□□□□ -0.91
CCDC88A-206ENST00000430086 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.37□□□□□ -0.91
CCDC88A-206ENST00000430086 POLR3KQ9Y2Y1 108 aaPredicted RBP9.37□□□□□ -0.91
CCDC88A-206ENST00000430086 ADMP35318 185 aa9.36□□□□□ -0.91
CCDC88A-206ENST00000430086 CRKP46108 304 aa9.36□□□□□ -0.91
CCDC88A-206ENST00000430086 TBC1D32Q96NH3 1257 aa9.36□□□□□ -0.91
CCDC88A-206ENST00000430086 FBRSQ9HAH7 460 aa9.36□□□□□ -0.91
CCDC88A-206ENST00000430086 UBP1Q9NZI7 540 aa9.36□□□□□ -0.91
CCDC88A-206ENST00000430086 TLR3O15455 904 aaKnown RBP9.35□□□□□ -0.91
CCDC88A-206ENST00000430086 F13BP05160 661 aa9.35□□□□□ -0.91
CCDC88A-206ENST00000430086 PGRP06401 933 aa9.35□□□□□ -0.91
CCDC88A-206ENST00000430086 APOBRQ0VD83 1088 aa9.35□□□□□ -0.91
CCDC88A-206ENST00000430086 SLBPQ14493 270 aaKnown RBP eCLIP9.35□□□□□ -0.91
CCDC88A-206ENST00000430086 ZDHHC13Q8IUH4 622 aa9.35□□□□□ -0.91
CCDC88A-206ENST00000430086 SLITRK4Q8IW52 837 aa9.35□□□□□ -0.91
CCDC88A-206ENST00000430086 GIMAP7Q8NHV1 300 aa9.35□□□□□ -0.91
CCDC88A-206ENST00000430086 LRIG2O94898 1065 aa9.34□□□□□ -0.91
CCDC88A-206ENST00000430086 CPSF6Q16630 551 aaKnown RBP eCLIP9.34□□□□□ -0.91
CCDC88A-206ENST00000430086 TMEM201Q5SNT2 666 aa9.34□□□□□ -0.91
CCDC88A-206ENST00000430086 OGFOD3Q6PK18 319 aa9.34□□□□□ -0.91
CCDC88A-206ENST00000430086 MRPL41Q8IXM3 137 aaKnown RBP9.34□□□□□ -0.91
CCDC88A-206ENST00000430086 SHKBP1Q8TBC3 707 aa9.34□□□□□ -0.91
CCDC88A-206ENST00000430086 CORINQ9Y5Q5 1042 aa9.34□□□□□ -0.91
CCDC88A-206ENST00000430086 CYP27A1Q02318 531 aa9.33□□□□□ -0.92
CCDC88A-206ENST00000430086 CDK5R2Q13319 367 aa9.33□□□□□ -0.92
CCDC88A-206ENST00000430086 NKG7Q16617 165 aa9.33□□□□□ -0.92
CCDC88A-206ENST00000430086 MCATQ8IVS2 390 aaKnown RBP9.33□□□□□ -0.92
CCDC88A-206ENST00000430086 SHISA5Q8N114 240 aa9.33□□□□□ -0.92
CCDC88A-206ENST00000430086 REXO1Q8N1G1 1221 aaKnown RBP9.33□□□□□ -0.92
CCDC88A-206ENST00000430086 FBXL6Q8N531 539 aa9.33□□□□□ -0.92
CCDC88A-206ENST00000430086 NKD1Q969G9 470 aa9.33□□□□□ -0.92
CCDC88A-206ENST00000430086 METTL22Q9BUU2 404 aaPredicted RBP9.33□□□□□ -0.92
CCDC88A-206ENST00000430086 BRMS1Q9HCU9 246 aa9.33□□□□□ -0.92
CCDC88A-206ENST00000430086 TJP2Q9UDY2 1190 aa9.33□□□□□ -0.92
CCDC88A-206ENST00000430086 WDR64B1ANS9 1081 aa9.32□□□□□ -0.92
CCDC88A-206ENST00000430086 ATE1O95260 518 aa9.32□□□□□ -0.92
CCDC88A-206ENST00000430086 HTR3BO95264 441 aa9.32□□□□□ -0.92
CCDC88A-206ENST00000430086 PLCG1P19174 1290 aa9.32□□□□□ -0.92
CCDC88A-206ENST00000430086 ERCC5P28715 1186 aaPredicted RBP9.32□□□□□ -0.92
CCDC88A-206ENST00000430086 PAK2Q13177 524 aa9.32□□□□□ -0.92
CCDC88A-206ENST00000430086 SEZ6Q53EL9 994 aa9.32□□□□□ -0.92
CCDC88A-206ENST00000430086 SLC6A19Q695T7 634 aa9.32□□□□□ -0.92
CCDC88A-206ENST00000430086 ARMCX6Q7L4S7 300 aa9.32□□□□□ -0.92
CCDC88A-206ENST00000430086 ACSF2Q96CM8 615 aaPredicted RBP9.32□□□□□ -0.92
CCDC88A-206ENST00000430086 TMEM87BQ96K49 555 aa9.32□□□□□ -0.92
CCDC88A-206ENST00000430086 FOXQ1Q9C009 403 aa9.32□□□□□ -0.92
CCDC88A-206ENST00000430086 EHMT1Q9H9B1 1298 aa9.32□□□□□ -0.92
CCDC88A-206ENST00000430086 ATG3Q9NT62 314 aa9.32□□□□□ -0.92
CCDC88A-206ENST00000430086 GRIN3BO60391 1043 aa9.31□□□□□ -0.92
CCDC88A-206ENST00000430086 CST3P01034 146 aaPredicted RBP9.31□□□□□ -0.92
CCDC88A-206ENST00000430086 MFSD2AQ8NA29 543 aa9.31□□□□□ -0.92
CCDC88A-206ENST00000430086 RASGRP4Q8TDF6 673 aa9.31□□□□□ -0.92
CCDC88A-206ENST00000430086 SPATA32Q96LK8 384 aa9.31□□□□□ -0.92
CCDC88A-206ENST00000430086 DUSP23Q9BVJ7 150 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms