RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 CFAP57Q96MR6 1250 aa16.22■□□□□ 0.19
PTPRU-204ENST00000428026 BICC1Q9H694 974 aaKnown RBP16.22■□□□□ 0.19
PTPRU-204ENST00000428026 KCNH3Q9ULD8 1083 aa16.22■□□□□ 0.19
PTPRU-204ENST00000428026 SH3TC1Q8TE82 1336 aa16.22■□□□□ 0.19
PTPRU-204ENST00000428026 MAP7D1Q3KQU3 841 aa16.22■□□□□ 0.19
PTPRU-204ENST00000428026 CCDC26Q8TAB7 109 aa16.22■□□□□ 0.19
PTPRU-204ENST00000428026 ANAPC4Q9UJX5 808 aa16.22■□□□□ 0.19
PTPRU-204ENST00000428026 KDM2BQ8NHM5 1336 aa16.22■□□□□ 0.19
PTPRU-204ENST00000428026 SEPT6Q14141 434 aa16.22■□□□□ 0.19
PTPRU-204ENST00000428026 CEP85LQ5SZL2 805 aa16.22■□□□□ 0.19
PTPRU-204ENST00000428026 ANO1Q5XXA6 986 aa16.22■□□□□ 0.19
PTPRU-204ENST00000428026 IFT74Q96LB3 600 aa16.22■□□□□ 0.19
PTPRU-204ENST00000428026 TRIM7Q9C029 511 aa16.22■□□□□ 0.19
PTPRU-204ENST00000428026 C6orf50Q9HD87 102 aa16.22■□□□□ 0.19
PTPRU-204ENST00000428026 GNAQP50148 359 aa16.21■□□□□ 0.19
PTPRU-204ENST00000428026 CABS1Q96KC9 395 aa16.21■□□□□ 0.19
PTPRU-204ENST00000428026 ERCC3P19447 782 aa16.21■□□□□ 0.19
PTPRU-204ENST00000428026 PARP10Q53GL7 1025 aa16.21■□□□□ 0.19
PTPRU-204ENST00000428026 SND1Q7KZF4 910 aaKnown RBP eCLIP16.21■□□□□ 0.19
PTPRU-204ENST00000428026 RAB3IL1Q8TBN0 382 aa16.21■□□□□ 0.19
PTPRU-204ENST00000428026 FEZ2Q9UHY8 353 aaPredicted RBP16.21■□□□□ 0.19
PTPRU-204ENST00000428026 SLC27A2O14975 620 aa16.21■□□□□ 0.19
PTPRU-204ENST00000428026 FAM13AO94988 1023 aa16.21■□□□□ 0.19
PTPRU-204ENST00000428026 IRX5P78411 483 aaPredicted RBP16.21■□□□□ 0.19
PTPRU-204ENST00000428026 SARNPP82979 210 aaKnown RBP16.21■□□□□ 0.19
PTPRU-204ENST00000428026 ERCC6LQ2NKX8 1250 aa16.21■□□□□ 0.19
PTPRU-204ENST00000428026 CDC37L1Q7L3B6 337 aa16.21■□□□□ 0.19
PTPRU-204ENST00000428026 EYA3Q99504 573 aa16.21■□□□□ 0.19
PTPRU-204ENST00000428026 MTUS1Q9ULD2 1270 aa16.21■□□□□ 0.19
PTPRU-204ENST00000428026 GJA3Q9Y6H8 435 aa16.21■□□□□ 0.19
PTPRU-204ENST00000428026 TRAF5O00463 557 aa16.21■□□□□ 0.18
PTPRU-204ENST00000428026 POLR2DO15514 142 aaKnown RBP16.21■□□□□ 0.18
PTPRU-204ENST00000428026 PHKG2P15735 406 aa16.21■□□□□ 0.18
PTPRU-204ENST00000428026 CALML3P27482 149 aa16.21■□□□□ 0.18
PTPRU-204ENST00000428026 USP37Q86T82 979 aa16.21■□□□□ 0.18
PTPRU-204ENST00000428026 KLHL7Q8IXQ5 586 aa16.21■□□□□ 0.18
PTPRU-204ENST00000428026 MAGEB6Q8N7X4 407 aa16.21■□□□□ 0.18
PTPRU-204ENST00000428026 TPD52P55327 224 aaPredicted RBP16.2■□□□□ 0.18
PTPRU-204ENST00000428026 SEL1L2Q5TEA6 688 aa16.2■□□□□ 0.18
PTPRU-204ENST00000428026 ZNF772Q68DY9 489 aaPredicted RBP16.2■□□□□ 0.18
PTPRU-204ENST00000428026 LMNTD2Q8IXW0 634 aa16.2■□□□□ 0.18
PTPRU-204ENST00000428026 NOL3O60936 208 aaKnown RBP16.2■□□□□ 0.18
PTPRU-204ENST00000428026 TRIM37O94972 964 aa16.2■□□□□ 0.18
PTPRU-204ENST00000428026 NEDD9Q14511 834 aa16.2■□□□□ 0.18
PTPRU-204ENST00000428026 SLF1Q9BQI6 1058 aa16.2■□□□□ 0.18
PTPRU-204ENST00000428026 SYNRGQ9UMZ2 1314 aa16.2■□□□□ 0.18
PTPRU-204ENST00000428026 MAGEB6P1A0A0J9YX57 407 aa16.2■□□□□ 0.18
PTPRU-204ENST00000428026 ERVV-2B6SEH9 535 aa16.2■□□□□ 0.18
PTPRU-204ENST00000428026 ALDH3A1P30838 453 aa16.2■□□□□ 0.18
PTPRU-204ENST00000428026 LRMPQ12912 555 aa16.2■□□□□ 0.18
PTPRU-204ENST00000428026 BEND3Q5T5X7 828 aa16.2■□□□□ 0.18
PTPRU-204ENST00000428026 ZNF354CQ86Y25 554 aa16.2■□□□□ 0.18
PTPRU-204ENST00000428026 MIPOL1Q8TD10 442 aa16.2■□□□□ 0.18
PTPRU-204ENST00000428026 RTL9Q8NET4 1388 aa16.2■□□□□ 0.18
PTPRU-204ENST00000428026 ATL3Q6DD88 541 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 WDR66Q8TBY9 1149 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 ANKRD2Q9GZV1 360 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 CIB2O75838 187 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 SECISBP2LQ93073 1101 aaKnown RBP16.19■□□□□ 0.18
PTPRU-204ENST00000428026 METTL22Q9BUU2 404 aaPredicted RBP16.19■□□□□ 0.18
PTPRU-204ENST00000428026 TAB2Q9NYJ8 693 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 SSX2IPQ9Y2D8 614 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 PRDM15P57071 1507 aaPredicted RBP16.19■□□□□ 0.18
PTPRU-204ENST00000428026 E7EVH7 732 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 CFAP157Q5JU67 520 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 BRINP3Q76B58 766 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 ARHGAP6O43182 974 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 UFL1O94874 794 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 PDE4DQ08499 809 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 IFT20Q8IY31 132 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 TRMT44Q8IYL2 757 aaKnown RBP16.19■□□□□ 0.18
PTPRU-204ENST00000428026 FAM212AQ96EL1 285 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 CHL1O00533 1208 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 ZNF202O95125 648 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 ITGA6P23229 1130 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 HS2ST1Q7LGA3 356 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 SMARCC2Q8TAQ2 1214 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 BAIAP2L1Q9UHR4 511 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 NFE2L3Q9Y4A8 694 aa16.19■□□□□ 0.18
PTPRU-204ENST00000428026 KCNQ3O43525 872 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 ARID4AP29374 1257 aaPredicted RBP16.18■□□□□ 0.18
PTPRU-204ENST00000428026 IMPACTQ9P2X3 320 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 H0YIN7 160 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 ZNF131P52739 623 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 NLRP12P59046 1061 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 ARHGEF2Q92974 986 aaKnown RBP16.18■□□□□ 0.18
PTPRU-204ENST00000428026 TCHPQ9BT92 498 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 SWAP70Q9UH65 585 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 FAM170AA1A519 330 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 NDC80O14777 642 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 ARHGEF25Q86VW2 580 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 CACNA2D3Q8IZS8 1091 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 FAM227BQ96M60 508 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 XPO4Q9C0E2 1151 aaKnown RBP16.18■□□□□ 0.18
PTPRU-204ENST00000428026 TXNDC16Q9P2K2 825 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 TRIM35Q9UPQ4 493 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 RAD50Q92878 1312 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 B4E1Z4 1266 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 KRT9P35527 623 aa16.18■□□□□ 0.18
PTPRU-204ENST00000428026 SEPT14Q6ZU15 432 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms