RNA–Protein interactions for RNA: ENST00000415548.1

CCT3-208, Transcript of chaperonin containing TCP1 subunit 3, human

TSL 3

Gene CCT3, Length 513 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCT3-208	ENST00000415548	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	10.17	□□□□□ -0.78
CCT3-208	ENST00000415548	SAP30BP	Q9UHR5	308 aa	Known RBP	10.17	□□□□□ -0.78
CCT3-208	ENST00000415548	PALD1	Q9ULE6	856 aa		10.17	□□□□□ -0.78
CCT3-208	ENST00000415548	SUPT16H	Q9Y5B9	1047 aa	Known RBP	10.17	□□□□□ -0.78
CCT3-208	ENST00000415548	MAGEB6P1	A0A0J9YX57	407 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	GPR25	O00155	361 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	CTNND1	O60716	968 aa	Known RBP	10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	CHGB	P05060	677 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	CETP	P11597	493 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	USP5	P45974	858 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	CRHR2	Q13324	411 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	HDAC1	Q13547	482 aa	Predicted RBP	10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	DGKZ	Q13574	1117 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	RRP1B	Q14684	758 aa	Known RBP	10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	SLC4A8	Q2Y0W8	1093 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	OTUD7B	Q6GQQ9	843 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	CERS3	Q8IU89	383 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	FAM43A	Q8N2R8	423 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	OTUD7A	Q8TE49	926 aa	Predicted RBP	10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	ZNF296	Q8WUU4	475 aa	Predicted RBP	10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	GPATCH3	Q96I76	525 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	RIOK1	Q9BRS2	568 aa	Known RBP	10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	MCOLN1	Q9GZU1	580 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	DHX36	Q9H2U1	1008 aa	Known RBP	10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	PICK1	Q9NRD5	415 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	PI4KB	Q9UBF8	816 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	KCNH4	Q9UQ05	1017 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	DOCK1	Q14185	1865 aa		10.16	□□□□□ -0.78
CCT3-208	ENST00000415548	MYH1	P12882	1939 aa		10.15	□□□□□ -0.78
CCT3-208	ENST00000415548	BTBD19	C9JJ37	291 aa		10.15	□□□□□ -0.78
CCT3-208	ENST00000415548	PTPRA	P18433	802 aa		10.15	□□□□□ -0.78
CCT3-208	ENST00000415548	ADD2	P35612	726 aa		10.15	□□□□□ -0.78
CCT3-208	ENST00000415548	CCDC84	Q86UT8	332 aa	Predicted RBP	10.15	□□□□□ -0.78
CCT3-208	ENST00000415548	LCORL	Q8N3X6	602 aa		10.15	□□□□□ -0.78
CCT3-208	ENST00000415548	DNAJC18	Q9H819	358 aa		10.15	□□□□□ -0.78
CCT3-208	ENST00000415548	HERC5	Q9UII4	1024 aa	Known RBP	10.15	□□□□□ -0.78
CCT3-208	ENST00000415548	ZHX2	Q9Y6X8	837 aa		10.15	□□□□□ -0.78
CCT3-208	ENST00000415548	MYH7	P12883	1935 aa		10.15	□□□□□ -0.79
CCT3-208	ENST00000415548	FKTN	O75072	461 aa		10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	MBD4	O95243	580 aa		10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	AAMP	Q13685	434 aa		10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	MOGS	Q13724	837 aa		10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	TAF1C	Q15572	869 aa	Predicted RBP	10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	NOM1	Q5C9Z4	860 aa	Known RBP	10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	ANKRD45	Q5TZF3	282 aa		10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	CTU1	Q7Z7A3	348 aa	Known RBP	10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	METTL16	Q86W50	562 aa	Known RBP	10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	FOXP4	Q8IVH2	680 aa	Predicted RBP	10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	GCC1	Q96CN9	775 aa		10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	ABHD8	Q96I13	439 aa		10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	TRIM34	Q9BYJ4	488 aa		10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	CRNKL1	Q9BZJ0	848 aa	Known RBP	10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	10.14	□□□□□ -0.79	5e-6	■■□□□ 11.5
CCT3-208	ENST00000415548	ARMT1	Q9H993	441 aa		10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	PHIP	Q8WWQ0	1821 aa		10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	ATAD5	Q96QE3	1844 aa		10.14	□□□□□ -0.79
CCT3-208	ENST00000415548	NAV1	Q8NEY1	1877 aa		10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	TRIM75P	A6NK02	468 aa		10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	CXCL11	O14625	94 aa		10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	PRKAB2	O43741	272 aa		10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	HLA-DOA	P06340	250 aa		10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	MX1	P20591	662 aa		10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	CAP2	P40123	477 aa		10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	IRX6	P78412	446 aa	Predicted RBP	10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	JAG1	P78504	1218 aa		10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	UBE3C	Q15386	1083 aa		10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	ZSCAN25	Q6NSZ9	544 aa		10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	PI4K2B	Q8TCG2	481 aa		10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	SDR42E1	Q8WUS8	393 aa		10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	ZFYVE28	Q9HCC9	887 aa		10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	AFG3L2	Q9Y4W6	797 aa		10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	DDX60L	Q5H9U9	1706 aa	Known RBP	10.13	□□□□□ -0.79
CCT3-208	ENST00000415548	TTC41P	Q6P2S7	1318 aa		10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	SALL3	Q9BXA9	1300 aa		10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	PTPRF	P10586	1907 aa		10.12	□□□□□ -0.79
CCT3-208	ENST00000415548		A0A0G2JLL6	359 aa	Predicted RBP	10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	PDHX	O00330	501 aa		10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	ERC2	O15083	957 aa		10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	GDF11	O95390	407 aa		10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	PLCD1	P51178	756 aa		10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	EVX2	Q03828	476 aa		10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	SHROOM1	Q2M3G4	852 aa	Predicted RBP	10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	GPAT2	Q6NUI2	795 aa		10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	GADL1	Q6ZQY3	521 aa		10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	PRRT2	Q7Z6L0	340 aa	Predicted RBP	10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	ANKRD23	Q86SG2	305 aa		10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	TTC6	Q86TZ1	520 aa		10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	KBTBD3	Q8NAB2	608 aa		10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	PUS7L	Q9H0K6	701 aa	Known RBP	10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	RWDD1	Q9H446	243 aa	Predicted RBP	10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	ZCCHC17	Q9NP64	241 aa	Known RBP	10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	MCM9	Q9NXL9	1143 aa		10.12	□□□□□ -0.79
CCT3-208	ENST00000415548	GLRX3	O76003	335 aa	Known RBP	10.11	□□□□□ -0.79
CCT3-208	ENST00000415548	IGHD	P01880	384 aa		10.11	□□□□□ -0.79
CCT3-208	ENST00000415548	POLR3D	P05423	398 aa	Predicted RBP	10.11	□□□□□ -0.79
CCT3-208	ENST00000415548	CYP2D6	P10635	497 aa		10.11	□□□□□ -0.79
CCT3-208	ENST00000415548	SP3	Q02447	781 aa		10.11	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms