RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 MNS1Q8NEH6 495 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 NEUROD6Q96NK8 337 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 BAG1Q99933 345 aaPredicted RBP6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 ALG1Q9BT22 464 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 KCNH3Q9ULD8 1083 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 RIPOR2Q9Y4F9 1068 aa6.58□□□□□ -1.36
CCDC88A-203ENST00000412148 A0A0G2JLW4 131 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 GPAA1O43292 621 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 TBC1D8O95759 1140 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 BMP15O95972 392 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 METAP2P50579 478 aaKnown RBP eCLIP6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 LRRC24Q50LG9 513 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 TTLL5Q6EMB2 1281 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 ZNF662Q6ZS27 426 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 EXOC4Q96A65 974 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 FAM217BQ9NTX9 383 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 FBXO2Q9UK22 296 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 CEP131Q9UPN4 1083 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 NDUFB9Q9Y6M9 179 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 COL5A2P05997 1499 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 DUOX1Q9NRD9 1551 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 TCRBV5S4A2TA0A5A2 114 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 ATP5J2-PTCD1G3V325 749 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 PTCD1O75127 700 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 SERPINC1P01008 464 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 MMP1P03956 469 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 POLR3DP05423 398 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 UQCRFS1P1P0C7P4 283 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 ATP1A3P13637 1013 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 LMOD1P29536 600 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 PLCD1P51178 756 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 HOMER1Q86YM7 354 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 FOXP4Q8IVH2 680 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 NOSTRINQ8IVI9 506 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 TMTC2Q8N394 836 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 ZBTB38Q8NAP3 1195 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 CCDC34Q96HJ3 373 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 CTAGE1Q96RT6 745 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 PYM1Q9BRP8 204 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 LY9Q9HBG7 655 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 PCDHA5Q9Y5H7 936 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 SRPRBQ9Y5M8 271 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 UBN2Q6ZU65 1347 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 PNPLA7Q6ZV29 1317 aa6.57□□□□□ -1.36
CCDC88A-203ENST00000412148 BMP6P22004 513 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 CASQ1P31415 396 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 NT5C2P49902 561 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 GUCY1B3Q02153 619 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 GPS2Q13227 327 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 TRIM29Q14134 588 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 POSTNQ15063 836 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 CCDC57Q2TAC2 916 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 CFAP100Q494V2 611 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 APTXQ7Z2E3 356 aaKnown RBP6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 SH3RF1Q7Z6J0 888 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 DPF2Q92785 391 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 GOLGA1Q92805 767 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 FUT8Q9BYC5 575 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 KRT23Q9C075 422 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 PUS7LQ9H0K6 701 aaKnown RBP6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 MAN1B1Q9UKM7 699 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 RTL9Q8NET4 1388 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 ATAD5Q96QE3 1844 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 LRRC10BA6NIK2 292 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 ZBTB43O43298 467 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 GNAT2P19087 354 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 TXLNAP40222 546 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 IARSP41252 1262 aaKnown RBP6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 CCDC88AQ3V6T2 1871 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 LONRF3Q496Y0 759 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 GORABQ5T7V8 394 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 CDKAL1Q5VV42 579 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 RASGRP2Q7LDG7 609 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 HS6ST3Q8IZP7 471 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 CEP112Q8N8E3 955 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 CNNM3Q8NE01 707 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 ARFGAP3Q9NP61 516 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 FANCLQ9NW38 375 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 NLRP2Q9NX02 1062 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 AATFQ9NY61 560 aaKnown RBP eCLIP6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 CACNA1SQ13698 1873 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 ROBO1Q9Y6N7 1651 aa6.56□□□□□ -1.36
CCDC88A-203ENST00000412148 SPATA31A3Q5VYP0 1347 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 CCDC196A0A1B0GTZ2 297 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 ACTN4O43707 911 aaKnown RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 CCDC175P0C221 793 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 PPP2R3AQ06190 1150 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 PNOCQ13519 176 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 TRIM14Q14142 442 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 HSP90AB3PQ58FF7 597 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 TTLL7Q6ZT98 887 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 CYB5R4Q7L1T6 521 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 SRGAP1Q7Z6B7 1085 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 STK11IPQ8N1F8 1099 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 LRRN4CLQ8ND94 238 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 UTP14AQ9BVJ6 771 aaKnown RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 RAI14Q9P0K7 980 aa6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 PATL2C9JE40 543 aaKnown RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 RANBP6O60518 1105 aaKnown RBP6.55□□□□□ -1.36
CCDC88A-203ENST00000412148 DEXIO95424 95 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms