RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 A0A1B0GTL3 188 aa1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 HRKO00198 91 aa1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 BMP5P22003 454 aa1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 CEBPAP49715 358 aaPredicted RBP1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 CDR1P51861 262 aa1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 GJA9P57773 515 aa1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 CAP1Q01518 475 aa1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 PLCB3Q01970 1234 aa1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 SPDYAQ5MJ70 313 aa1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 SMYD4Q8IYR2 804 aaPredicted RBP1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 RGL4Q8IZJ4 473 aa1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 OXR1Q8N573 874 aa1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 DEF6Q9H4E7 631 aa1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 SOX17Q9H6I2 414 aaPredicted RBP1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 SP110Q9HB58 689 aa1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 PTGFRNQ9P2B2 879 aa1.34□□□□□ -2.19
RNU6-540P-201ENST00000384622 A0A0A6YYK5 440 aaPredicted RBP1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 KIF4AO95239 1232 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 VIPR1P32241 457 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 C21orf58P58505 322 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 FAM69CQ0P6D2 419 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 FOXE3Q13461 319 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 ADGRF1Q5T601 910 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 CDKAL1Q5VV42 579 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 LIPIQ6XZB0 460 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 FAM214BQ7L5A3 538 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 LIMS2Q7Z4I7 341 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 CEP120Q8N960 986 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 C9orf106Q8NAJ2 232 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 PDZD8Q8NEN9 1154 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 PIWIL2Q8TC59 973 aaKnown RBP1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 SSBP3Q9BWW4 388 aaPredicted RBP1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 SOX13Q9UN79 622 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 DMRT1Q9Y5R6 373 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 ZNF536O15090 1300 aa1.33□□□□□ -2.2
RNU6-540P-201ENST00000384622 FITM1A5D6W6 292 aa1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 FAM155AB1AL88 458 aaPredicted RBP1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 H3BS24 57 aa1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 EIF4EBP3O60516 100 aaPredicted RBP1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 GPR37L1O60883 481 aa1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 RNGTTO60942 597 aaKnown RBP1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 CBSLP0DN79 551 aa1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 MAOBP27338 520 aa1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 CBSP35520 551 aa1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 ICAM4Q14773 271 aa1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 IGDCC3Q8IVU1 814 aa1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 PLPP7Q8NBV4 271 aa1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 C2orf49Q9BVC5 232 aaPredicted RBP1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 KLK14Q9P0G3 267 aa1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 GPR160Q9UJ42 338 aa1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 KCNMB2Q9Y691 235 aa1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 NOTCH2Q04721 2471 aa1.32□□□□□ -2.2
RNU6-540P-201ENST00000384622 NARSO43776 548 aaKnown RBP1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 BUB1BO60566 1050 aaPredicted RBP1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 KRTAP10-12P60413 245 aa1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 DAB2P98082 770 aa1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 SNX17Q15036 470 aa1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 TTC39BQ5VTQ0 682 aaPredicted RBP1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 MRGPRGQ86SM5 289 aa1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 LDLRAD3Q86YD5 345 aa1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 ZBTB8BQ8NAP8 495 aaPredicted RBP1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 CHMP7Q8WUX9 453 aaPredicted RBP1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 FOXQ1Q9C009 403 aa1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 CSRNP2Q9H175 543 aa1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 ZFYVE1Q9HBF4 777 aa1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 PCOLCE2Q9UKZ9 415 aa1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 PPP1R9AQ9ULJ8 1098 aa1.31□□□□□ -2.2
RNU6-540P-201ENST00000384622 PDE2AO00408 941 aaPredicted RBP1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 MUSKO15146 869 aa1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 CYP11A1P05108 521 aa1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 RASA1P20936 1047 aa1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 GALK1P51570 392 aa1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 GTF2IP78347 998 aa1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 MIIPQ5JXC2 388 aa1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 OLFML2BQ68BL8 750 aa1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 VN1R5Q7Z5H4 357 aa1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 LDHDQ86WU2 507 aa1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 STAG2Q8N3U4 1231 aa1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 BSNDQ8WZ55 320 aa1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 UBE2FQ969M7 185 aa1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 GJD4Q96KN9 370 aaPredicted RBP1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 SUSD2Q9UGT4 822 aa1.3□□□□□ -2.2
RNU6-540P-201ENST00000384622 CTSBP07858 339 aa1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 ZNF37AP17032 561 aaPredicted RBP1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 PDE3BQ13370 1112 aa1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 DGKZQ13574 1117 aa1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 NR0B2Q15466 257 aa1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 VWA3BQ502W6 1294 aa1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 KLHL22Q53GT1 634 aa1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 SYCE2Q6PIF2 218 aa1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 SIRT2Q8IXJ6 389 aa1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 PROCA1Q8NCQ7 364 aaPredicted RBP1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 ZNF503Q96F45 646 aa1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 GNL3Q9BVP2 549 aaKnown RBP eCLIP1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 NRSN2Q9GZP1 204 aa1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 ATXN3LQ9H3M9 355 aa1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 SEMA4AQ9H3S1 761 aa1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 CD248Q9HCU0 757 aa1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 SSU72Q9NP77 194 aaKnown RBP1.29□□□□□ -2.2
RNU6-540P-201ENST00000384622 TCAF1Q9Y4C2 921 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms