RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 PRC1O43663 620 aa14.59□□□□□ -0.07
CIITA-202ENST00000381835 HDLBPQ00341 1268 aaKnown RBP14.59□□□□□ -0.07
CIITA-202ENST00000381835 PICALMQ13492 652 aa14.59□□□□□ -0.07
CIITA-202ENST00000381835 BRF1Q92994 677 aa14.59□□□□□ -0.07
CIITA-202ENST00000381835 ZDHHC15Q96MV8 337 aa14.59□□□□□ -0.07
CIITA-202ENST00000381835 MRIQ9BWK5 157 aa14.59□□□□□ -0.07
CIITA-202ENST00000381835 ALDH8A1Q9H2A2 487 aaPredicted RBP14.59□□□□□ -0.07
CIITA-202ENST00000381835 RNF41Q9H4P4 317 aaPredicted RBP14.59□□□□□ -0.07
CIITA-202ENST00000381835 ANAPC4Q9UJX5 808 aa14.59□□□□□ -0.07
CIITA-202ENST00000381835 SERPINA10Q9UK55 444 aa14.59□□□□□ -0.07
CIITA-202ENST00000381835 TPCN1Q9ULQ1 816 aa14.59□□□□□ -0.07
CIITA-202ENST00000381835 TIAM2Q8IVF5 1701 aa14.58□□□□□ -0.07
CIITA-202ENST00000381835 LARGE1O95461 756 aa14.58□□□□□ -0.08
CIITA-202ENST00000381835 FOXD4L5Q5VV16 416 aaPredicted RBP14.58□□□□□ -0.08
CIITA-202ENST00000381835 CIAPIN1Q6FI81 312 aa14.58□□□□□ -0.08
CIITA-202ENST00000381835 CDC42EP5Q6NZY7 148 aa14.58□□□□□ -0.08
CIITA-202ENST00000381835 FOXD4L4Q8WXT5 416 aaPredicted RBP14.58□□□□□ -0.08
CIITA-202ENST00000381835 CNNM2Q9H8M5 875 aa14.58□□□□□ -0.08
CIITA-202ENST00000381835 FOCADQ5VW36 1801 aa14.58□□□□□ -0.08
CIITA-202ENST00000381835 FLT1P17948 1338 aa14.58□□□□□ -0.08
CIITA-202ENST00000381835 ECM29Q5VYK3 1845 aa14.58□□□□□ -0.08
CIITA-202ENST00000381835 KDM4AO75164 1064 aa14.58□□□□□ -0.08
CIITA-202ENST00000381835 POLR3DP05423 398 aaPredicted RBP14.58□□□□□ -0.08
CIITA-202ENST00000381835 ANTXR2P58335 489 aa14.58□□□□□ -0.08
CIITA-202ENST00000381835 SBK1Q52WX2 424 aa14.58□□□□□ -0.08
CIITA-202ENST00000381835 CYB5R4Q7L1T6 521 aa14.58□□□□□ -0.08
CIITA-202ENST00000381835 AMOTL1Q8IY63 956 aa14.58□□□□□ -0.08
CIITA-202ENST00000381835 GMLQ99445 158 aa14.58□□□□□ -0.08
CIITA-202ENST00000381835 KRT23Q9C075 422 aa14.58□□□□□ -0.08
CIITA-202ENST00000381835 GPHNQ9NQX3 736 aaPredicted RBP14.58□□□□□ -0.08
CIITA-202ENST00000381835 PRDM1O75626 825 aa14.57□□□□□ -0.08
CIITA-202ENST00000381835 ME3Q16798 604 aa14.57□□□□□ -0.08
CIITA-202ENST00000381835 CFAP100Q494V2 611 aa14.57□□□□□ -0.08
CIITA-202ENST00000381835 LRSAM1Q6UWE0 723 aa14.57□□□□□ -0.08
CIITA-202ENST00000381835 OGFOD1Q8N543 542 aa14.57□□□□□ -0.08
CIITA-202ENST00000381835 CHAMP1Q96JM3 812 aa14.57□□□□□ -0.08
CIITA-202ENST00000381835 PDLIM2Q96JY6 352 aa14.57□□□□□ -0.08
CIITA-202ENST00000381835 ZSWIM5Q9P217 1185 aa14.57□□□□□ -0.08
CIITA-202ENST00000381835 NOL7Q9UMY1 257 aaKnown RBP14.57□□□□□ -0.08
CIITA-202ENST00000381835 SYCE3A1L190 88 aa14.57□□□□□ -0.08
CIITA-202ENST00000381835 WDHD1O75717 1129 aaPredicted RBP14.57□□□□□ -0.08
CIITA-202ENST00000381835 STK3Q13188 491 aa14.57□□□□□ -0.08
CIITA-202ENST00000381835 C12orf60Q5U649 245 aa14.57□□□□□ -0.08
CIITA-202ENST00000381835 ZSCAN31Q96LW9 406 aaPredicted RBP14.57□□□□□ -0.08
CIITA-202ENST00000381835 TMEM63CQ9P1W3 806 aa14.57□□□□□ -0.08
CIITA-202ENST00000381835 HDAC9Q9UKV0 1011 aa14.57□□□□□ -0.08
CIITA-202ENST00000381835 SLC3A2P08195 630 aaKnown RBP14.56□□□□□ -0.08
CIITA-202ENST00000381835 CACNB3P54284 484 aa14.56□□□□□ -0.08
CIITA-202ENST00000381835 APOBRQ0VD83 1088 aa14.56□□□□□ -0.08
CIITA-202ENST00000381835 CUL4AQ13619 759 aa14.56□□□□□ -0.08
CIITA-202ENST00000381835 TNIP1Q15025 636 aa14.56□□□□□ -0.08
CIITA-202ENST00000381835 AGBL3Q8NEM8 1001 aa14.56□□□□□ -0.08
CIITA-202ENST00000381835 DDX4Q9NQI0 724 aaKnown RBP14.56□□□□□ -0.08
CIITA-202ENST00000381835 SH2B1Q9NRF2 756 aaPredicted RBP14.56□□□□□ -0.08
CIITA-202ENST00000381835 NAP1L2Q9ULW6 460 aaPredicted RBP14.56□□□□□ -0.08
CIITA-202ENST00000381835 PLCD1P51178 756 aa14.55□□□□□ -0.08
CIITA-202ENST00000381835 CCDC83Q8IWF9 413 aa14.55□□□□□ -0.08
CIITA-202ENST00000381835 NECAB1Q8N987 351 aa14.55□□□□□ -0.08
CIITA-202ENST00000381835 DYNLL2Q96FJ2 89 aa14.55□□□□□ -0.08
CIITA-202ENST00000381835 PRMT6Q96LA8 375 aaPredicted RBP14.55□□□□□ -0.08
CIITA-202ENST00000381835 TDRD3Q9H7E2 651 aaKnown RBP14.55□□□□□ -0.08
CIITA-202ENST00000381835 RANBP6O60518 1105 aaKnown RBP14.55□□□□□ -0.08
CIITA-202ENST00000381835 MBD3O95983 291 aa14.55□□□□□ -0.08
CIITA-202ENST00000381835 EIF6P56537 245 aaKnown RBP14.55□□□□□ -0.08
CIITA-202ENST00000381835 NFIAQ12857 509 aa14.55□□□□□ -0.08
CIITA-202ENST00000381835 ESR2Q92731 530 aa14.55□□□□□ -0.08
CIITA-202ENST00000381835 ZKSCAN3Q9BRR0 538 aa14.55□□□□□ -0.08
CIITA-202ENST00000381835 AGXT2Q9BYV1 514 aa14.55□□□□□ -0.08
CIITA-202ENST00000381835 SBF1O95248 1867 aa14.55□□□□□ -0.08
CIITA-202ENST00000381835 FZD9O00144 591 aa14.54□□□□□ -0.08
CIITA-202ENST00000381835 YBX3P16989 372 aaKnown RBP eCLIP14.54□□□□□ -0.08
CIITA-202ENST00000381835 PDE4BQ07343 736 aa14.54□□□□□ -0.08
CIITA-202ENST00000381835 GJA3Q9Y6H8 435 aa14.54□□□□□ -0.08
CIITA-202ENST00000381835 DDX60LQ5H9U9 1706 aaKnown RBP14.54□□□□□ -0.08
CIITA-202ENST00000381835 WDR19Q8NEZ3 1342 aa14.54□□□□□ -0.08
CIITA-202ENST00000381835 TCP10Q12799 353 aa14.54□□□□□ -0.08
CIITA-202ENST00000381835 DLGAP5Q15398 846 aa14.54□□□□□ -0.08
CIITA-202ENST00000381835 DICER1Q9UPY3 1922 aaKnown RBP14.53□□□□□ -0.08
CIITA-202ENST00000381835 IFIT3O14879 490 aaKnown RBP14.53□□□□□ -0.08
CIITA-202ENST00000381835 ZNF500O60304 480 aaPredicted RBP14.53□□□□□ -0.08
CIITA-202ENST00000381835 DTNBO60941 627 aa14.53□□□□□ -0.08
CIITA-202ENST00000381835 PCP11498 1178 aaKnown RBP14.53□□□□□ -0.08
CIITA-202ENST00000381835 LMNB1P20700 586 aa14.53□□□□□ -0.08
CIITA-202ENST00000381835 TERF1P54274 439 aa14.53□□□□□ -0.08
CIITA-202ENST00000381835 ANGEL1Q9UNK9 670 aaKnown RBP14.53□□□□□ -0.08
CIITA-202ENST00000381835 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.53□□□□□ -0.08
CIITA-202ENST00000381835 SHTN1A0MZ66 631 aa14.53□□□□□ -0.08
CIITA-202ENST00000381835 SPDYE2BA6NHP3 402 aa14.53□□□□□ -0.08
CIITA-202ENST00000381835 BRD1O95696 1058 aa14.53□□□□□ -0.08
CIITA-202ENST00000381835 FGRP09769 529 aa14.53□□□□□ -0.08
CIITA-202ENST00000381835 SPDYE6P0CI01 402 aa14.53□□□□□ -0.08
CIITA-202ENST00000381835 TMEM67Q5HYA8 995 aa14.53□□□□□ -0.08
CIITA-202ENST00000381835 FBXL16Q8N461 479 aa14.53□□□□□ -0.08
CIITA-202ENST00000381835 SLC44A5Q8NCS7 719 aa14.53□□□□□ -0.08
CIITA-202ENST00000381835 INTS4Q96HW7 963 aaKnown RBP14.53□□□□□ -0.08
CIITA-202ENST00000381835 TMEM87BQ96K49 555 aa14.53□□□□□ -0.08
CIITA-202ENST00000381835 OSBPL5Q9H0X9 879 aaPredicted RBP14.53□□□□□ -0.08
CIITA-202ENST00000381835 PDCL3Q9H2J4 239 aa14.53□□□□□ -0.08
CIITA-202ENST00000381835 MKNK2Q9HBH9 465 aa14.53□□□□□ -0.08
CIITA-202ENST00000381835 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms