RNA–Protein interactions for RNA: ENST00000374490.7

HMGCL-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCL, Length 1,600 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-203ENST00000374490 SSRP1Q08945 709 aaKnown RBP16.11■□□□□ 0.17
HMGCL-203ENST00000374490 AKNAD1Q5T1N1 836 aa16.11■□□□□ 0.17
HMGCL-203ENST00000374490 VPS37DQ86XT2 251 aa16.11■□□□□ 0.17
HMGCL-203ENST00000374490 TMTC2Q8N394 836 aa16.11■□□□□ 0.17
HMGCL-203ENST00000374490 AOPEPQ8N6M6 819 aa16.11■□□□□ 0.17
HMGCL-203ENST00000374490 MAGEB6Q8N7X4 407 aa16.11■□□□□ 0.17
HMGCL-203ENST00000374490 STAG1Q8WVM7 1258 aa16.11■□□□□ 0.17
HMGCL-203ENST00000374490 SETDB2Q96T68 719 aa16.11■□□□□ 0.17
HMGCL-203ENST00000374490 CDC5LQ99459 802 aaKnown RBP16.11■□□□□ 0.17
HMGCL-203ENST00000374490 NYXQ9GZU5 481 aa16.11■□□□□ 0.17
HMGCL-203ENST00000374490 RNF41Q9H4P4 317 aaPredicted RBP16.11■□□□□ 0.17
HMGCL-203ENST00000374490 SRP68Q9UHB9 627 aaKnown RBP16.11■□□□□ 0.17
HMGCL-203ENST00000374490 NRBP1Q9UHY1 535 aa16.11■□□□□ 0.17
HMGCL-203ENST00000374490 SLC12A7Q9Y666 1083 aa16.11■□□□□ 0.17
HMGCL-203ENST00000374490 MMP10P09238 476 aa16.1■□□□□ 0.17
HMGCL-203ENST00000374490 PFKFB1P16118 471 aa16.1■□□□□ 0.17
HMGCL-203ENST00000374490 U2AF2P26368 475 aaKnown RBP eCLIP16.1■□□□□ 0.17
HMGCL-203ENST00000374490 RASGRF1Q13972 1273 aa16.1■□□□□ 0.17
HMGCL-203ENST00000374490 TBC1D9BQ66K14 1250 aa16.1■□□□□ 0.17
HMGCL-203ENST00000374490 MFSD6Q6ZSS7 791 aa16.1■□□□□ 0.17
HMGCL-203ENST00000374490 LRRC8AQ8IWT6 810 aa16.1■□□□□ 0.17
HMGCL-203ENST00000374490 ZNF526Q8TF50 670 aaPredicted RBP16.1■□□□□ 0.17
HMGCL-203ENST00000374490 CACTINQ8WUQ7 758 aaKnown RBP16.1■□□□□ 0.17
HMGCL-203ENST00000374490 ARHGEF1Q92888 912 aaKnown RBP16.1■□□□□ 0.17
HMGCL-203ENST00000374490 PAXBP1Q9Y5B6 917 aa16.1■□□□□ 0.17
HMGCL-203ENST00000374490 UBR3Q6ZT12 1888 aa16.1■□□□□ 0.17
HMGCL-203ENST00000374490 IFIT3O14879 490 aaKnown RBP16.09■□□□□ 0.17
HMGCL-203ENST00000374490 MYO1BO43795 1136 aa16.09■□□□□ 0.17
HMGCL-203ENST00000374490 CUTAO60888 179 aa16.09■□□□□ 0.17
HMGCL-203ENST00000374490 FMNL1O95466 1100 aaPredicted RBP16.09■□□□□ 0.17
HMGCL-203ENST00000374490 LRMPQ12912 555 aa16.09■□□□□ 0.17
HMGCL-203ENST00000374490 NTRK3Q16288 839 aa16.09■□□□□ 0.17
HMGCL-203ENST00000374490 MICU3Q86XE3 530 aa16.09■□□□□ 0.17
HMGCL-203ENST00000374490 RAB11FIP4Q86YS3 637 aa16.09■□□□□ 0.17
HMGCL-203ENST00000374490 ELOA2Q8IYF1 753 aaPredicted RBP16.09■□□□□ 0.17
HMGCL-203ENST00000374490 NOL10Q9BSC4 688 aaKnown RBP16.09■□□□□ 0.17
HMGCL-203ENST00000374490 BCL2L12Q9HB09 334 aa16.09■□□□□ 0.17
HMGCL-203ENST00000374490 EPB41L4AQ9HCS5 686 aaPredicted RBP16.09■□□□□ 0.17
HMGCL-203ENST00000374490 CCDC196A0A1B0GTZ2 297 aa16.08■□□□□ 0.17
HMGCL-203ENST00000374490 IKBKBO14920 756 aa16.08■□□□□ 0.17
HMGCL-203ENST00000374490 IFNAR1P17181 557 aa16.08■□□□□ 0.17
HMGCL-203ENST00000374490 CDC27P30260 824 aa16.08■□□□□ 0.17
HMGCL-203ENST00000374490 SYKP43405 635 aa16.08■□□□□ 0.17
HMGCL-203ENST00000374490 SAFBQ15424 915 aaKnown RBP eCLIP16.08■□□□□ 0.17
HMGCL-203ENST00000374490 SYCP1Q15431 976 aa16.08■□□□□ 0.17
HMGCL-203ENST00000374490 CCDC144BQ3MJ40 725 aa16.08■□□□□ 0.17
HMGCL-203ENST00000374490 NBPF5PQ86XG9 351 aaPredicted RBP16.08■□□□□ 0.17
HMGCL-203ENST00000374490 CCDC144CPQ8IYA2 1237 aa16.08■□□□□ 0.17
HMGCL-203ENST00000374490 TRIM22Q8IYM9 498 aa16.08■□□□□ 0.17
HMGCL-203ENST00000374490 NLGN1Q8N2Q7 840 aa16.08■□□□□ 0.17
HMGCL-203ENST00000374490 CCDC150Q8NCX0 1101 aa16.08■□□□□ 0.17
HMGCL-203ENST00000374490 OSBPL5Q9H0X9 879 aaPredicted RBP16.08■□□□□ 0.17
HMGCL-203ENST00000374490 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.08■□□□□ 0.17
HMGCL-203ENST00000374490 KCND1Q9NSA2 647 aa16.08■□□□□ 0.17
HMGCL-203ENST00000374490 HPSEQ9Y251 543 aa16.08■□□□□ 0.17
HMGCL-203ENST00000374490 ERICH2A1L162 156 aa16.08■□□□□ 0.16
HMGCL-203ENST00000374490 GSG1L2A8MUP6 293 aa16.08■□□□□ 0.16
HMGCL-203ENST00000374490 NRDCO43847 1150 aa16.08■□□□□ 0.16
HMGCL-203ENST00000374490 TDO2P48775 406 aa16.08■□□□□ 0.16
HMGCL-203ENST00000374490 PTPAQ15257 358 aa16.08■□□□□ 0.16
HMGCL-203ENST00000374490 ERFEQ4G0M1 354 aa16.08■□□□□ 0.16
HMGCL-203ENST00000374490 HELBQ8NG08 1087 aaPredicted RBP16.08■□□□□ 0.16
HMGCL-203ENST00000374490 KIF2AO00139 706 aaPredicted RBP16.07■□□□□ 0.16
HMGCL-203ENST00000374490 PPP2R5BQ15173 497 aa16.07■□□□□ 0.16
HMGCL-203ENST00000374490 TPD52L1Q16890 204 aaPredicted RBP16.07■□□□□ 0.16
HMGCL-203ENST00000374490 RESP18Q5W5W9 173 aa16.07■□□□□ 0.16
HMGCL-203ENST00000374490 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.07■□□□□ 0.16
HMGCL-203ENST00000374490 ARMT1Q9H993 441 aa16.07■□□□□ 0.16
HMGCL-203ENST00000374490 FAM217BQ9NTX9 383 aaPredicted RBP16.07■□□□□ 0.16
HMGCL-203ENST00000374490 ZSWIM5Q9P217 1185 aa16.07■□□□□ 0.16
HMGCL-203ENST00000374490 HOOK1Q9UJC3 728 aaKnown RBP16.07■□□□□ 0.16
HMGCL-203ENST00000374490 TUBE1Q9UJT0 475 aa16.07■□□□□ 0.16
HMGCL-203ENST00000374490 SLC4A4Q9Y6R1 1079 aa16.07■□□□□ 0.16
HMGCL-203ENST00000374490 RIOK3O14730 519 aaKnown RBP16.06■□□□□ 0.16
HMGCL-203ENST00000374490 NPHP1O15259 732 aa16.06■□□□□ 0.16
HMGCL-203ENST00000374490 CTIFO43310 598 aaKnown RBP16.06■□□□□ 0.16
HMGCL-203ENST00000374490 TNNT1P13805 278 aa16.06■□□□□ 0.16
HMGCL-203ENST00000374490 TGFB2P61812 414 aa16.06■□□□□ 0.16
HMGCL-203ENST00000374490 WTAPQ15007 396 aa16.06■□□□□ 0.16
HMGCL-203ENST00000374490 RTN1Q16799 776 aa16.06■□□□□ 0.16
HMGCL-203ENST00000374490 DPCR1Q3MIW9 517 aa16.06■□□□□ 0.16
HMGCL-203ENST00000374490 MAP3K14Q99558 947 aa16.06■□□□□ 0.16
HMGCL-203ENST00000374490 GNL3LQ9NVN8 582 aaKnown RBP16.06■□□□□ 0.16
HMGCL-203ENST00000374490 RANBP6O60518 1105 aaKnown RBP16.05■□□□□ 0.16
HMGCL-203ENST00000374490 WDHD1O75717 1129 aaPredicted RBP16.05■□□□□ 0.16
HMGCL-203ENST00000374490 TPTE2Q6XPS3 522 aa16.05■□□□□ 0.16
HMGCL-203ENST00000374490 PHKBQ93100 1093 aa16.05■□□□□ 0.16
HMGCL-203ENST00000374490 SLC26A6Q9BXS9 759 aa16.05■□□□□ 0.16
HMGCL-203ENST00000374490 DENND2AQ9ULE3 1009 aa16.05■□□□□ 0.16
HMGCL-203ENST00000374490 MROH7-TTC4A0A0A0MT08 1334 aa16.05■□□□□ 0.16
HMGCL-203ENST00000374490 CBFA2T2O43439 604 aa16.05■□□□□ 0.16
HMGCL-203ENST00000374490 DEXIO95424 95 aa16.05■□□□□ 0.16
HMGCL-203ENST00000374490 SKILP12757 684 aa16.05■□□□□ 0.16
HMGCL-203ENST00000374490 KCNJ6P48051 423 aa16.05■□□□□ 0.16
HMGCL-203ENST00000374490 CTDSPL2Q05D32 466 aa16.05■□□□□ 0.16
HMGCL-203ENST00000374490 SLC10A5Q5PT55 438 aa16.05■□□□□ 0.16
HMGCL-203ENST00000374490 NOSTRINQ8IVI9 506 aa16.05■□□□□ 0.16
HMGCL-203ENST00000374490 KRI1Q8N9T8 703 aaKnown RBP16.05■□□□□ 0.16
HMGCL-203ENST00000374490 AIFM3Q96NN9 605 aa16.05■□□□□ 0.16
HMGCL-203ENST00000374490 FOXP1Q9H334 677 aaPredicted RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms