RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 BRINP3Q76B58 766 aa11.34□□□□□ -0.59
RNF40-202ENST00000357890 MPHOSPH8Q99549 860 aa11.34□□□□□ -0.59
RNF40-202ENST00000357890 NCAPGQ9BPX3 1015 aa11.34□□□□□ -0.59
RNF40-202ENST00000357890 RTEL1Q9NZ71 1219 aa11.34□□□□□ -0.59
RNF40-202ENST00000357890 TRMT112Q9UI30 125 aaKnown RBP11.34□□□□□ -0.59
RNF40-202ENST00000357890 TUBB4AP04350 444 aa11.34□□□□□ -0.59
RNF40-202ENST00000357890 NLRP12P59046 1061 aa11.34□□□□□ -0.59
RNF40-202ENST00000357890 PALLDQ8WX93 1383 aa11.33□□□□□ -0.59
RNF40-202ENST00000357890 FRMD3A2A2Y4 597 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 POTEB2H3BUK9 544 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 M0R2C6 588 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 YEATS4O95619 227 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 INPP5BP32019 993 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 SSRP1Q08945 709 aaKnown RBP11.33□□□□□ -0.6
RNF40-202ENST00000357890 PNOCQ13519 176 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 VPS37DQ86XT2 251 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 OTUD6BQ8N6M0 293 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 FBXO3Q9UK99 471 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 CTAGE9A4FU28 777 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 H2AFXP16104 143 aaPredicted RBP11.33□□□□□ -0.6
RNF40-202ENST00000357890 CALRP27797 417 aaKnown RBP11.33□□□□□ -0.6
RNF40-202ENST00000357890 ADORA1P30542 326 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 STX17P56962 302 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 PIP4K2BP78356 416 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 HELBQ8NG08 1087 aaPredicted RBP11.33□□□□□ -0.6
RNF40-202ENST00000357890 AIFM3Q96NN9 605 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 UBAP1LF5GYI3 381 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 EXOSC10Q01780 885 aaKnown RBP11.33□□□□□ -0.6
RNF40-202ENST00000357890 ARMCX5Q6P1M9 558 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 DHX40Q8IX18 779 aaKnown RBP11.33□□□□□ -0.6
RNF40-202ENST00000357890 CEP112Q8N8E3 955 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 DACH1Q9UI36 760 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 KAT6BQ8WYB5 2073 aa11.33□□□□□ -0.6
RNF40-202ENST00000357890 CTDNEP1O95476 244 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 MAP9Q49MG5 647 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 KRT40Q6A162 431 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 CLIC6Q96NY7 704 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 ANGEL1Q9UNK9 670 aaKnown RBP11.32□□□□□ -0.6
RNF40-202ENST00000357890 MINDY4BA8MYZ0 360 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 TULP2O00295 520 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 TXLNAP40222 546 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 MST1RQ04912 1400 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 SLC20A2Q08357 652 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 PPP2R5AQ15172 486 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 TRMT44Q8IYL2 757 aaKnown RBP11.32□□□□□ -0.6
RNF40-202ENST00000357890 FMR1NBQ8N0W7 255 aaPredicted RBP11.32□□□□□ -0.6
RNF40-202ENST00000357890 UBAC1Q9BSL1 405 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 NACAP1Q9BZK3 213 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 MKRN1Q9UHC7 482 aaKnown RBP11.32□□□□□ -0.6
RNF40-202ENST00000357890 MEGF6O75095 1541 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 ARHGAP6O43182 974 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 TADA3O75528 432 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 XBP1P17861 261 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 FOXR1Q6PIV2 292 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 JPH2Q9BR39 696 aaPredicted RBP11.32□□□□□ -0.6
RNF40-202ENST00000357890 ZKSCAN3Q9BRR0 538 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 SUGCTQ9HAC7 445 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 CAPN7Q9Y6W3 813 aa11.32□□□□□ -0.6
RNF40-202ENST00000357890 A0A1W2PQ27 194 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 A0A1W2PQ64 194 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 A0A1W2PQD8 194 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 ZMYND10O75800 440 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 CASP7P55210 303 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.31□□□□□ -0.6
RNF40-202ENST00000357890 SCLT1Q96NL6 688 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 NUP88Q99567 741 aaPredicted RBP11.31□□□□□ -0.6
RNF40-202ENST00000357890 ABCF2Q9UG63 623 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 KCNH3Q9ULD8 1083 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 GUCA1BQ9UMX6 200 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 SAMM50Q9Y512 469 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 WDR17Q8IZU2 1322 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 N4BP1O75113 896 aaKnown RBP11.31□□□□□ -0.6
RNF40-202ENST00000357890 AFMP43652 599 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 ATP2B2Q01814 1243 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 RBM43Q6ZSC3 357 aaKnown RBP11.31□□□□□ -0.6
RNF40-202ENST00000357890 KIAA1328Q86T90 577 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 RABGGTAQ92696 567 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 BRMS1Q9HCU9 246 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 LRP2BPQ9P2M1 347 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 SPATA31A3Q5VYP0 1347 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 PCCAP05165 728 aaPredicted RBP11.31□□□□□ -0.6
RNF40-202ENST00000357890 UQCRFS1P1P0C7P4 283 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 ITGA6P23229 1130 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 CMA1P23946 247 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 MAP3K12Q12852 859 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 DNAJC10Q8IXB1 793 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 FAM76AQ8TAV0 307 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 ATRIPQ8WXE1 791 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 WASF1Q92558 559 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 WDR24Q96S15 920 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 IRX2Q9BZI1 471 aaPredicted RBP11.31□□□□□ -0.6
RNF40-202ENST00000357890 PUS7LQ9H0K6 701 aaKnown RBP11.31□□□□□ -0.6
RNF40-202ENST00000357890 FANCLQ9NW38 375 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 MTMR7Q9Y216 660 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 KDM3BQ7LBC6 1761 aa11.31□□□□□ -0.6
RNF40-202ENST00000357890 NEBLO76041 1014 aa11.3□□□□□ -0.6
RNF40-202ENST00000357890 ECM2O94769 699 aaPredicted RBP11.3□□□□□ -0.6
RNF40-202ENST00000357890 TBC1D8O95759 1140 aa11.3□□□□□ -0.6
RNF40-202ENST00000357890 ABCB6Q9NP58 842 aa11.3□□□□□ -0.6
RNF40-202ENST00000357890 POLR3EQ9NVU0 708 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms