RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 CSRNP1Q96S65 589 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 CRNKL1Q9BZJ0 848 aaKnown RBP4.81□□□□□ -1.64
LIG4-201ENST00000356922 ATP8A2Q9NTI2 1148 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.81□□□□□ -1.64
LIG4-201ENST00000356922 NEDD4P46934 1319 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 RAD50Q92878 1312 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 FOCADQ5VW36 1801 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 DDX60LQ5H9U9 1706 aaKnown RBP4.81□□□□□ -1.64
LIG4-201ENST00000356922 USP2O75604 605 aaPredicted RBP4.81□□□□□ -1.64
LIG4-201ENST00000356922 INPP5BP32019 993 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 PPARAQ07869 468 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 FAM47AQ5JRC9 791 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 SLF2Q8IX21 1173 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 CLMNQ96JQ2 1002 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 DSCC1Q9BVC3 393 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 SNX14Q9Y5W7 946 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 HIP1O00291 1037 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 CD2BP2O95400 341 aaKnown RBP4.81□□□□□ -1.64
LIG4-201ENST00000356922 GUCY1A2P33402 732 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 HSPA4P34932 840 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 TDO2P48775 406 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 ALX1Q15699 326 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 CYB5R4Q7L1T6 521 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 FAM83AQ86UY5 434 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 PNMA8AQ86V59 439 aaPredicted RBP4.81□□□□□ -1.64
LIG4-201ENST00000356922 CDCA5Q96FF9 252 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 ZKSCAN3Q9BRR0 538 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 LRRC2Q9BYS8 371 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 NAPBQ9H115 298 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 MYH1P12882 1939 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 ENTPD3O75355 529 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 GDF11O95390 407 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 CDK8P49336 464 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 MAP3K10Q02779 954 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 FKBP1CQ5VVH2 108 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 METTL16Q86W50 562 aaKnown RBP4.8□□□□□ -1.64
LIG4-201ENST00000356922 ZC3H15Q8WU90 426 aaKnown RBP4.8□□□□□ -1.64
LIG4-201ENST00000356922 DCPSQ96C86 337 aaKnown RBP4.8□□□□□ -1.64
LIG4-201ENST00000356922 ZNF408Q9H9D4 720 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 IL17RBQ9NRM6 502 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 ZSWIM5Q9P217 1185 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 E7EWF7 191 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 UBE2Q2LH0YL09 131 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 MYO1BO43795 1136 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 POLR3DP05423 398 aaPredicted RBP4.8□□□□□ -1.64
LIG4-201ENST00000356922 RASA1P20936 1047 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 ANTXR2P58335 489 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 SBK1Q52WX2 424 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.8□□□□□ -1.64
LIG4-201ENST00000356922 CDC37L1Q7L3B6 337 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 LDHDQ86WU2 507 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 RUFY2Q8WXA3 655 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 KCNB2Q92953 911 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 UPF3BQ9BZI7 483 aaKnown RBP4.8□□□□□ -1.64
LIG4-201ENST00000356922 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.8□□□□□ -1.64
LIG4-201ENST00000356922 B4E1Z4 1266 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 FGRP09769 529 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 AKR1B1P15121 316 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 TICAM2Q86XR7 235 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 SULF1Q8IWU6 871 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 ZIC5Q96T25 663 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 PI4KBQ9UBF8 816 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 SERPINB13Q9UIV8 391 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 PASKQ96RG2 1323 aa4.8□□□□□ -1.64
LIG4-201ENST00000356922 A0A1W2PRG0 241 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 ZNF213O14771 459 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 PLCG2P16885 1265 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 GNAT2P19087 354 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 LRRFIP1Q32MZ4 808 aaKnown RBP4.79□□□□□ -1.64
LIG4-201ENST00000356922 KIAA1755Q5JYT7 1200 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 CHADLQ6NUI6 762 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 TATDN1Q6P1N9 297 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 GIMAP6Q6P9H5 292 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 KLRG1Q96E93 195 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 NOL10Q9BSC4 688 aaKnown RBP4.79□□□□□ -1.64
LIG4-201ENST00000356922 ANAPC4Q9UJX5 808 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 RRP12Q5JTH9 1297 aaKnown RBP4.79□□□□□ -1.64
LIG4-201ENST00000356922 RCSD1Q6JBY9 416 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 C16orf86Q6ZW13 317 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 PITPNM2Q9BZ72 1349 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 KDM4AO75164 1064 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 TOMM70O94826 608 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 GJA5P36382 358 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 AKNAD1Q5T1N1 836 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 KIAA1211Q6ZU35 1233 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 TBC1D32Q96NH3 1257 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 C22orf23Q9BZE7 217 aa4.79□□□□□ -1.64
LIG4-201ENST00000356922 NAV1Q8NEY1 1877 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 IGSF3O75054 1194 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 CELF2O95319 508 aaKnown RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 GH2P01242 217 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 ECE1P42892 770 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 MMP14P50281 582 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 TFAP4Q01664 338 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 TMED8Q6PL24 325 aaPredicted RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 APOBEC3FQ8IUX4 373 aaKnown RBP4.78□□□□□ -1.64
LIG4-201ENST00000356922 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.78□□□□□ -1.64
LIG4-201ENST00000356922 ACER1Q8TDN7 264 aa4.78□□□□□ -1.64
LIG4-201ENST00000356922 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.78□□□□□ -1.64
LIG4-201ENST00000356922 TMOD2Q9NZR1 351 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms