RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 GLIS2Q9BZE0 524 aaPredicted RBP11.31□□□□□ -0.6
RFX3-201ENST00000302303 ARPP21Q9UBL0 812 aaPredicted RBP11.31□□□□□ -0.6
RFX3-201ENST00000302303 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.31□□□□□ -0.6
RFX3-201ENST00000302303 SNX14Q9Y5W7 946 aa11.31□□□□□ -0.6
RFX3-201ENST00000302303 ROBO3Q96MS0 1386 aa11.31□□□□□ -0.6
RFX3-201ENST00000302303 MINDY4BA8MYZ0 360 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 ITGBL1O95965 494 aaPredicted RBP11.3□□□□□ -0.6
RFX3-201ENST00000302303 RBM25P49756 843 aaKnown RBP11.3□□□□□ -0.6
RFX3-201ENST00000302303 JAG1P78504 1218 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 USP48Q86UV5 1035 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 LDHDQ86WU2 507 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 ZNF784Q8NCA9 323 aaPredicted RBP11.3□□□□□ -0.6
RFX3-201ENST00000302303 SLC44A5Q8NCS7 719 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 DCPSQ96C86 337 aaKnown RBP11.3□□□□□ -0.6
RFX3-201ENST00000302303 NACAP1Q9BZK3 213 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 DHX36Q9H2U1 1008 aaKnown RBP11.3□□□□□ -0.6
RFX3-201ENST00000302303 TMOD2Q9NZR1 351 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 CTNNA3Q9UI47 895 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 FAM196BA6NMK8 535 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 ZNF213O14771 459 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 YY1P25490 414 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 SHMT1P34896 483 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 TNFAIP1Q13829 316 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 C16orf86Q6ZW13 317 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 KRT26Q7Z3Y9 468 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 TBC1D32Q96NH3 1257 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 CSRNP1Q96S65 589 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 EHD4Q9H223 541 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 GPBP1L1Q9HC44 474 aaPredicted RBP11.3□□□□□ -0.6
RFX3-201ENST00000302303 PI4KBQ9UBF8 816 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 PPP2R3BQ9Y5P8 575 aa11.3□□□□□ -0.6
RFX3-201ENST00000302303 LAMA4Q16363 1823 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 NEDD4P46934 1319 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 PHF20L1A8MW92 1017 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 E7EWF7 191 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 TRAF5O00463 557 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 TBC1D12O60347 775 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 POLR3DP05423 398 aaPredicted RBP11.29□□□□□ -0.6
RFX3-201ENST00000302303 TNNI2P48788 182 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 CDK8P49336 464 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 SHROOM1Q2M3G4 852 aaPredicted RBP11.29□□□□□ -0.6
RFX3-201ENST00000302303 TATDN1Q6P1N9 297 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 CDC37L1Q7L3B6 337 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 TTC6Q86TZ1 520 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 FOXP4Q8IVH2 680 aaPredicted RBP11.29□□□□□ -0.6
RFX3-201ENST00000302303 STK11IPQ8N1F8 1099 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 STAG1Q8WVM7 1258 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.29□□□□□ -0.6
RFX3-201ENST00000302303 C22orf23Q9BZE7 217 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 FZD1Q9UP38 647 aa11.29□□□□□ -0.6
RFX3-201ENST00000302303 RASA1P20936 1047 aa11.28□□□□□ -0.6
RFX3-201ENST00000302303 IMMTQ16891 758 aaKnown RBP11.28□□□□□ -0.6
RFX3-201ENST00000302303 AKNAD1Q5T1N1 836 aa11.28□□□□□ -0.6
RFX3-201ENST00000302303 MIGA2Q7L4E1 593 aa11.28□□□□□ -0.6
RFX3-201ENST00000302303 SULF1Q8IWU6 871 aa11.28□□□□□ -0.6
RFX3-201ENST00000302303 CDCA5Q96FF9 252 aa11.28□□□□□ -0.6
RFX3-201ENST00000302303 SERPINB13Q9UIV8 391 aa11.28□□□□□ -0.6
RFX3-201ENST00000302303 ZNF112Q9UJU3 913 aa11.28□□□□□ -0.6
RFX3-201ENST00000302303 LAMB1P07942 1786 aa11.28□□□□□ -0.6
RFX3-201ENST00000302303 ORC4O43929 436 aa11.27□□□□□ -0.61
RFX3-201ENST00000302303 USP2O75604 605 aaPredicted RBP11.27□□□□□ -0.61
RFX3-201ENST00000302303 PRDM1O75626 825 aa11.27□□□□□ -0.61
RFX3-201ENST00000302303 ATXN8OSP0DMR3 200 aa11.27□□□□□ -0.61
RFX3-201ENST00000302303 CHADLQ6NUI6 762 aa11.27□□□□□ -0.61
RFX3-201ENST00000302303 ZSCAN29Q8IWY8 852 aaPredicted RBP11.27□□□□□ -0.61
RFX3-201ENST00000302303 CLEC11AQ9Y240 323 aa11.27□□□□□ -0.61
RFX3-201ENST00000302303 CPA1P15085 419 aa11.26□□□□□ -0.61
RFX3-201ENST00000302303 GUCY1A2P33402 732 aa11.26□□□□□ -0.61
RFX3-201ENST00000302303 ANTXR2P58335 489 aa11.26□□□□□ -0.61
RFX3-201ENST00000302303 ANAPC15P60006 121 aa11.26□□□□□ -0.61
RFX3-201ENST00000302303 EXOSC10Q01780 885 aaKnown RBP11.26□□□□□ -0.61
RFX3-201ENST00000302303 CST9Q5W186 159 aa11.26□□□□□ -0.61
RFX3-201ENST00000302303 CYB5R4Q7L1T6 521 aa11.26□□□□□ -0.61
RFX3-201ENST00000302303 MB21D2Q8IYB1 491 aaPredicted RBP11.26□□□□□ -0.61
RFX3-201ENST00000302303 DDRGK1Q96HY6 314 aa11.26□□□□□ -0.61
RFX3-201ENST00000302303 ZSWIM5Q9P217 1185 aa11.26□□□□□ -0.61
RFX3-201ENST00000302303 HERC5Q9UII4 1024 aaKnown RBP11.26□□□□□ -0.61
RFX3-201ENST00000302303 PASKQ96RG2 1323 aa11.26□□□□□ -0.61
RFX3-201ENST00000302303 PAPPA2Q9BXP8 1791 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 EIF5BO60841 1220 aaKnown RBP11.25□□□□□ -0.61
RFX3-201ENST00000302303 HLA-DOAP06340 250 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 NOVP48745 357 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 MOB2Q70IA6 237 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 SIAH1Q8IUQ4 282 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 ZSWIM6Q9HCJ5 1215 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 IL17RBQ9NRM6 502 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 TAOK2Q9UL54 1235 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 IGKV6D-41A0A0C4DH26 115 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 B4E1Z4 1266 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 PCP11498 1178 aaKnown RBP11.25□□□□□ -0.61
RFX3-201ENST00000302303 AKR1B1P15121 316 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 MAP3K11Q16584 847 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 SUPT20HL1Q3ZLR7 823 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 FAM47AQ5JRC9 791 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 RNF20Q5VTR2 975 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 MFSD6Q6ZSS7 791 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 KLRG1Q96E93 195 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 TM6SF1Q9BZW5 370 aa11.25□□□□□ -0.61
RFX3-201ENST00000302303 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.25□□□□□ -0.61
RFX3-201ENST00000302303 SWAP70Q9UH65 585 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms