RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 GORABQ5T7V8 394 aa18.24■□□□□ 0.51
CCDC88B-201ENST00000301897 ANKRD13CQ8N6S4 541 aa18.24■□□□□ 0.51
CCDC88B-201ENST00000301897 ZNF280CQ8ND82 737 aa18.24■□□□□ 0.51
CCDC88B-201ENST00000301897 CDCA7LQ96GN5 454 aa18.24■□□□□ 0.51
CCDC88B-201ENST00000301897 PRO3102Q9H379 93 aa18.24■□□□□ 0.51
CCDC88B-201ENST00000301897 LOC285556D6RIA3 1793 aa18.23■□□□□ 0.51
CCDC88B-201ENST00000301897 TFCP2Q12800 502 aa18.23■□□□□ 0.51
CCDC88B-201ENST00000301897 NEUROD6Q96NK8 337 aa18.23■□□□□ 0.51
CCDC88B-201ENST00000301897 DEFB118Q96PH6 123 aa18.23■□□□□ 0.51
CCDC88B-201ENST00000301897 CRISPLD2Q9H0B8 497 aa18.23■□□□□ 0.51
CCDC88B-201ENST00000301897 HERC5Q9UII4 1024 aaKnown RBP18.23■□□□□ 0.51
CCDC88B-201ENST00000301897 TREML2Q5T2D2 321 aa18.22■□□□□ 0.51
CCDC88B-201ENST00000301897 ANKLE1Q8NAG6 615 aa18.22■□□□□ 0.51
CCDC88B-201ENST00000301897 SPATA5Q8NB90 893 aa18.22■□□□□ 0.51
CCDC88B-201ENST00000301897 NSUN4Q96CB9 384 aaKnown RBP18.22■□□□□ 0.51
CCDC88B-201ENST00000301897 NOL10Q9BSC4 688 aaKnown RBP18.22■□□□□ 0.51
CCDC88B-201ENST00000301897 AS3MTQ9HBK9 375 aa18.22■□□□□ 0.51
CCDC88B-201ENST00000301897 TAOK2Q9UL54 1235 aa18.22■□□□□ 0.51
CCDC88B-201ENST00000301897 USP17L5A8MUK1 530 aa18.21■□□□□ 0.51
CCDC88B-201ENST00000301897 HMGCRP04035 888 aa18.21■□□□□ 0.51
CCDC88B-201ENST00000301897 CAP2P40123 477 aa18.21■□□□□ 0.51
CCDC88B-201ENST00000301897 SPP2Q13103 211 aa18.21■□□□□ 0.51
CCDC88B-201ENST00000301897 NECAB2Q7Z6G3 386 aa18.21■□□□□ 0.51
CCDC88B-201ENST00000301897 HMG20BQ9P0W2 317 aa18.21■□□□□ 0.51
CCDC88B-201ENST00000301897 ATAD5Q96QE3 1844 aa18.21■□□□□ 0.51
CCDC88B-201ENST00000301897 UQCRFS1P1P0C7P4 283 aa18.2■□□□□ 0.5
CCDC88B-201ENST00000301897 PLCG2P16885 1265 aa18.2■□□□□ 0.5
CCDC88B-201ENST00000301897 ARID4AP29374 1257 aaPredicted RBP18.2■□□□□ 0.5
CCDC88B-201ENST00000301897 HMGCS2P54868 508 aa18.2■□□□□ 0.5
CCDC88B-201ENST00000301897 SH3D19Q5HYK7 790 aa18.2■□□□□ 0.5
CCDC88B-201ENST00000301897 TEX11Q8IYF3 940 aa18.2■□□□□ 0.5
CCDC88B-201ENST00000301897 ZNF384Q8TF68 577 aa18.2■□□□□ 0.5
CCDC88B-201ENST00000301897 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.2■□□□□ 0.5
CCDC88B-201ENST00000301897 DHX36Q9H2U1 1008 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-201ENST00000301897 RAI14Q9P0K7 980 aa18.2■□□□□ 0.5
CCDC88B-201ENST00000301897 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.2■□□□□ 0.5
CCDC88B-201ENST00000301897 LAMA3Q16787 3333 aa18.19■□□□□ 0.5
CCDC88B-201ENST00000301897 IPO8O15397 1037 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-201ENST00000301897 SLURP2P0DP57 97 aa18.19■□□□□ 0.5
CCDC88B-201ENST00000301897 RARSP54136 660 aaKnown RBP18.19■□□□□ 0.5
CCDC88B-201ENST00000301897 CCDC84Q86UT8 332 aaPredicted RBP18.19■□□□□ 0.5
CCDC88B-201ENST00000301897 ASCC2Q9H1I8 757 aaPredicted RBP18.19■□□□□ 0.5
CCDC88B-201ENST00000301897 LRP2BPQ9P2M1 347 aa18.19■□□□□ 0.5
CCDC88B-201ENST00000301897 PI4KBQ9UBF8 816 aa18.19■□□□□ 0.5
CCDC88B-201ENST00000301897 IGSF3O75054 1194 aa18.18■□□□□ 0.5
CCDC88B-201ENST00000301897 BAG3O95817 575 aa18.18■□□□□ 0.5
CCDC88B-201ENST00000301897 G3BP1Q13283 466 aaKnown RBP eCLIP18.18■□□□□ 0.5
CCDC88B-201ENST00000301897 PAWRQ96IZ0 340 aaKnown RBP18.18■□□□□ 0.5
CCDC88B-201ENST00000301897 GINM1Q9NU53 330 aa18.18■□□□□ 0.5
CCDC88B-201ENST00000301897 RPTORQ8N122 1335 aa18.18■□□□□ 0.5
CCDC88B-201ENST00000301897 FAM196BA6NMK8 535 aa18.17■□□□□ 0.5
CCDC88B-201ENST00000301897 GNAI2P04899 355 aa18.17■□□□□ 0.5
CCDC88B-201ENST00000301897 ASNSP08243 561 aa18.17■□□□□ 0.5
CCDC88B-201ENST00000301897 IRX3P78415 501 aaPredicted RBP18.17■□□□□ 0.5
CCDC88B-201ENST00000301897 WDR18Q9BV38 432 aa18.17■□□□□ 0.5
CCDC88B-201ENST00000301897 HMX1Q9NP08 348 aaPredicted RBP18.17■□□□□ 0.5
CCDC88B-201ENST00000301897 TMOD4Q9NZQ9 345 aa18.17■□□□□ 0.5
CCDC88B-201ENST00000301897 MORF4L1Q9UBU8 362 aa18.17■□□□□ 0.5
CCDC88B-201ENST00000301897 PI16Q6UXB8 463 aa18.16■□□□□ 0.5
CCDC88B-201ENST00000301897 TBC1D9Q6ZT07 1266 aa18.16■□□□□ 0.5
CCDC88B-201ENST00000301897 TRMT44Q8IYL2 757 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-201ENST00000301897 NBPF3Q9H094 633 aa18.16■□□□□ 0.5
CCDC88B-201ENST00000301897 GJD2Q9UKL4 321 aa18.16■□□□□ 0.5
CCDC88B-201ENST00000301897 CUL9Q8IWT3 2517 aa18.15■□□□□ 0.5
CCDC88B-201ENST00000301897 C19orf81C9J6K1 198 aa18.15■□□□□ 0.5
CCDC88B-201ENST00000301897 HOXA7P31268 230 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-201ENST00000301897 BMP8BP34820 402 aa18.15■□□□□ 0.5
CCDC88B-201ENST00000301897 MCAMP43121 646 aa18.15■□□□□ 0.5
CCDC88B-201ENST00000301897 BACE1P56817 501 aa18.15■□□□□ 0.5
CCDC88B-201ENST00000301897 NAA16Q6N069 864 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-201ENST00000301897 GTF3C2Q8WUA4 911 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-201ENST00000301897 TRIM34Q9BYJ4 488 aa18.15■□□□□ 0.5
CCDC88B-201ENST00000301897 ALPK3Q96L96 1907 aa18.15■□□□□ 0.5
CCDC88B-201ENST00000301897 XRCC5P13010 732 aaKnown RBP18.14■□□□□ 0.49
CCDC88B-201ENST00000301897 FOXP4Q8IVH2 680 aaPredicted RBP18.14■□□□□ 0.49
CCDC88B-201ENST00000301897 SH3RF3Q8TEJ3 882 aaPredicted RBP18.14■□□□□ 0.49
CCDC88B-201ENST00000301897 SOCS4Q8WXH5 440 aa18.14■□□□□ 0.49
CCDC88B-201ENST00000301897 GPR108Q9NPR9 543 aa18.14■□□□□ 0.49
CCDC88B-201ENST00000301897 STAP2Q9UGK3 403 aa18.14■□□□□ 0.49
CCDC88B-201ENST00000301897 MAST2Q6P0Q8 1798 aa18.14■□□□□ 0.49
CCDC88B-201ENST00000301897 PPP4CP60510 307 aa18.13■□□□□ 0.49
CCDC88B-201ENST00000301897 MTMR2Q13614 643 aa18.13■□□□□ 0.49
CCDC88B-201ENST00000301897 PDE3AQ14432 1141 aa18.13■□□□□ 0.49
CCDC88B-201ENST00000301897 CCDC158Q5M9N0 1113 aa18.13■□□□□ 0.49
CCDC88B-201ENST00000301897 GPR153Q6NV75 609 aa18.13■□□□□ 0.49
CCDC88B-201ENST00000301897 ATF7IPQ6VMQ6 1270 aa18.13■□□□□ 0.49
CCDC88B-201ENST00000301897 METTL16Q86W50 562 aaKnown RBP18.13■□□□□ 0.49
CCDC88B-201ENST00000301897 GPRC5AQ8NFJ5 357 aa18.13■□□□□ 0.49
CCDC88B-201ENST00000301897 NUDT12Q9BQG2 462 aa18.13■□□□□ 0.49
CCDC88B-201ENST00000301897 A0A0C4DFX4 3053 aa18.13■□□□□ 0.49
CCDC88B-201ENST00000301897 USP17L10C9JJH3 530 aa18.12■□□□□ 0.49
CCDC88B-201ENST00000301897 MAPK4P31152 587 aa18.12■□□□□ 0.49
CCDC88B-201ENST00000301897 RRP1BQ14684 758 aaKnown RBP18.12■□□□□ 0.49
CCDC88B-201ENST00000301897 TTC39AQ5SRH9 613 aa18.12■□□□□ 0.49
CCDC88B-201ENST00000301897 CRACR2BQ8N4Y2 399 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-201ENST00000301897 DIS3LQ8TF46 1054 aaKnown RBP18.12■□□□□ 0.49
CCDC88B-201ENST00000301897 GDF15Q99988 308 aa18.12■□□□□ 0.49
CCDC88B-201ENST00000301897 AATFQ9NY61 560 aaKnown RBP eCLIP18.12■□□□□ 0.49
CCDC88B-201ENST00000301897 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.12■□□□□ 0.49
CCDC88B-201ENST00000301897 FOCADQ5VW36 1801 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms