RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 DPP8Q6V1X1 898 aaPredicted RBP21.37■■□□□ 1.01
UPF1-201ENST00000262803 KIF24Q5T7B8 1368 aa21.37■■□□□ 1.01
UPF1-201ENST00000262803 EVCP57679 992 aa21.37■■□□□ 1.01
UPF1-201ENST00000262803 CDC37L1Q7L3B6 337 aa21.37■■□□□ 1.01
UPF1-201ENST00000262803 IGSF22Q8N9C0 903 aa21.37■■□□□ 1.01
UPF1-201ENST00000262803 DIS3L2Q8IYB7 885 aaKnown RBP21.36■■□□□ 1.01
UPF1-201ENST00000262803 ARMT1Q9H993 441 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 AS3MTQ9HBK9 375 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 VPS18Q9P253 973 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 ATP10AO60312 1499 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 ARHGEF35A5YM69 484 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 ZBTB16Q05516 673 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 TNFAIP1Q13829 316 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 TICAM2Q86XR7 235 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 AZI2Q9H6S1 392 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 CETN3O15182 167 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 GMNNO75496 209 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 BRD1O95696 1058 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 MNAT1P51948 309 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 GCKRQ14397 625 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 NDUFB9Q9Y6M9 179 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 ABCC4O15439 1325 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 M0QZ92 97 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 NOP56O00567 594 aaKnown RBP21.36■■□□□ 1.01
UPF1-201ENST00000262803 ADCY7P51828 1080 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 FANCCQ00597 558 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 ERCC6LQ2NKX8 1250 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 LETM2Q2VYF4 491 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 ZBTB9Q96C00 473 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 LPXNO60711 386 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 CUTAO60888 179 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 ERCC5P28715 1186 aaPredicted RBP21.36■■□□□ 1.01
UPF1-201ENST00000262803 GJC1P36383 396 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 IWS1Q96ST2 819 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 FAM204AQ9H8W3 233 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 OGFRQ9NZT2 677 aa21.36■■□□□ 1.01
UPF1-201ENST00000262803 TNFAIP3P21580 790 aa21.35■■□□□ 1.01
UPF1-201ENST00000262803 AFAP1L2Q8N4X5 818 aa21.35■■□□□ 1.01
UPF1-201ENST00000262803 KIAA0232Q92628 1395 aa21.35■■□□□ 1.01
UPF1-201ENST00000262803 TMEM110-MUSTN1A8MSY1 372 aa21.35■■□□□ 1.01
UPF1-201ENST00000262803 A6NNZ2 444 aa21.35■■□□□ 1.01
UPF1-201ENST00000262803 TRAF5O00463 557 aa21.35■■□□□ 1.01
UPF1-201ENST00000262803 TUBB8Q3ZCM7 444 aa21.35■■□□□ 1.01
UPF1-201ENST00000262803 TMEM63CQ9P1W3 806 aa21.35■■□□□ 1.01
UPF1-201ENST00000262803 CTNND2Q9UQB3 1225 aa21.35■■□□□ 1.01
UPF1-201ENST00000262803 GSPT1P15170 499 aaKnown RBP21.35■■□□□ 1.01
UPF1-201ENST00000262803 PPP2R3AQ06190 1150 aa21.35■■□□□ 1.01
UPF1-201ENST00000262803 NONOQ15233 471 aaKnown RBP eCLIP21.35■■□□□ 1.012e-6■■■□□ 17
UPF1-201ENST00000262803 C17orf53Q8N3J3 647 aaPredicted RBP21.34■■□□□ 1.01
UPF1-201ENST00000262803 PPP1R9BQ96SB3 815 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 TM6SF1Q9BZW5 370 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 NUCKS1Q9H1E3 243 aaKnown RBP21.34■■□□□ 1.01
UPF1-201ENST00000262803 VPS16Q9H269 839 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 IGSF3O75054 1194 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 UBL4BQ8N7F7 174 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 POLR2DO15514 142 aaKnown RBP21.34■■□□□ 1.01
UPF1-201ENST00000262803 JAK2O60674 1132 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 TCIRG1Q13488 830 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 SLC52A2Q9HAB3 445 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 TTF2Q9UNY4 1162 aaKnown RBP21.34■■□□□ 1.01
UPF1-201ENST00000262803 V9GY48 417 aaPredicted RBP21.34■■□□□ 1.01
UPF1-201ENST00000262803 ZNF202O95125 648 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 TBC1D8BQ0IIM8 1120 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 SETDB1Q15047 1291 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 CFAP157Q5JU67 520 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 UBE2Q2Q8WVN8 375 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 BEGAINQ9BUH8 593 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 NOC4LQ9BVI4 516 aaKnown RBP21.34■■□□□ 1.01
UPF1-201ENST00000262803 TRIM7Q9C029 511 aa21.34■■□□□ 1.01
UPF1-201ENST00000262803 PAIP2Q9BPZ3 127 aaKnown RBP21.33■■□□□ 1.01
UPF1-201ENST00000262803 RIOK3O14730 519 aaKnown RBP21.33■■□□□ 1.01
UPF1-201ENST00000262803 NIM1KQ8IY84 436 aa21.33■■□□□ 1.01
UPF1-201ENST00000262803 MAIP1Q8WWC4 291 aa21.33■■□□□ 1.01
UPF1-201ENST00000262803 IFT81Q8WYA0 676 aa21.33■■□□□ 1.01
UPF1-201ENST00000262803 MKRN1Q9UHC7 482 aaKnown RBP21.33■■□□□ 1.01
UPF1-201ENST00000262803 GJA3Q9Y6H8 435 aa21.33■■□□□ 1.01
UPF1-201ENST00000262803 ACTN4O43707 911 aaKnown RBP21.33■■□□□ 1
UPF1-201ENST00000262803 DPH6Q7L8W6 267 aa21.33■■□□□ 1
UPF1-201ENST00000262803 LARGE2Q8N3Y3 721 aa21.33■■□□□ 1
UPF1-201ENST00000262803 ERVV-2B6SEH9 535 aa21.33■■□□□ 1
UPF1-201ENST00000262803 P4HA1P13674 534 aa21.33■■□□□ 1
UPF1-201ENST00000262803 GRM1Q13255 1194 aa21.33■■□□□ 1
UPF1-201ENST00000262803 DCAF17Q5H9S7 520 aaPredicted RBP21.33■■□□□ 1
UPF1-201ENST00000262803 IPO4Q8TEX9 1081 aaKnown RBP21.33■■□□□ 1
UPF1-201ENST00000262803 FAM184BQ9ULE4 1060 aa21.33■■□□□ 1
UPF1-201ENST00000262803 ZBTB21Q9ULJ3 1066 aa21.33■■□□□ 1
UPF1-201ENST00000262803 U2AF2P26368 475 aaKnown RBP eCLIP21.32■■□□□ 12e-8■■■□□ 17.4
UPF1-201ENST00000262803 MSL1Q68DK7 614 aa21.32■■□□□ 1
UPF1-201ENST00000262803 ABCC2Q92887 1545 aa21.32■■□□□ 1
UPF1-201ENST00000262803 A1BGP04217 495 aa21.32■■□□□ 1
UPF1-201ENST00000262803 CNGA1P29973 690 aa21.32■■□□□ 1
UPF1-201ENST00000262803 EIF4A1P60842 406 aaKnown RBP21.32■■□□□ 1
UPF1-201ENST00000262803 PIK3AP1Q6ZUJ8 805 aa21.32■■□□□ 1
UPF1-201ENST00000262803 TAOK1Q7L7X3 1001 aa21.32■■□□□ 1
UPF1-201ENST00000262803 NLRX1Q86UT6 975 aa21.32■■□□□ 1
UPF1-201ENST00000262803 FCHSD1Q86WN1 690 aa21.32■■□□□ 1
UPF1-201ENST00000262803 HMGB1P1B2RPK0 211 aaPredicted RBP21.32■■□□□ 1
UPF1-201ENST00000262803 PDE4DQ08499 809 aa21.32■■□□□ 1
UPF1-201ENST00000262803 CCT6BQ92526 530 aa21.32■■□□□ 1
UPF1-201ENST00000262803 PABPC4Q13310 644 aaKnown RBP eCLIP21.32■■□□□ 14e-12■■■□□ 18.7
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms