RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 CCDC14Q49A88 953 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 NDC80O14777 642 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 ZKSCAN8Q15776 578 aaPredicted RBP14.29□□□□□ -0.12
USP40-201ENST00000251722 GNPTABQ3T906 1256 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 MSL1Q68DK7 614 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 CCDC155Q8N6L0 562 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 GPR108Q9NPR9 543 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 ADGRL3Q9HAR2 1447 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 MAP3K15Q6ZN16 1313 aa14.29□□□□□ -0.12
USP40-201ENST00000251722 CA8P35219 290 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 WDR17Q8IZU2 1322 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 AFMP43652 599 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 NONOQ15233 471 aaKnown RBP eCLIP14.28□□□□□ -0.12
USP40-201ENST00000251722 MCF2L2Q86YR7 1114 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 CPLX3Q8WVH0 158 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 ZNF496Q96IT1 587 aaPredicted RBP14.28□□□□□ -0.12
USP40-201ENST00000251722 RNF123Q5XPI4 1314 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 GPAA1O43292 621 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 TUBBP07437 444 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 GRM1Q13255 1194 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 NECAB1Q8N987 351 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 USP19O94966 1318 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 SSH2Q76I76 1423 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 NEURL1BA8MQ27 555 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 BIN1O00499 593 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 A1BGP04217 495 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 UBE4AQ14139 1066 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 GABPB2Q8TAK5 448 aaPredicted RBP14.28□□□□□ -0.12
USP40-201ENST00000251722 NOX5Q96PH1 765 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 FNBP1Q96RU3 617 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 YY1AP1Q9H869 796 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 JAKMIP2Q96AA8 810 aa14.28□□□□□ -0.12
USP40-201ENST00000251722 YWHAEP62258 255 aaKnown RBP14.27□□□□□ -0.12
USP40-201ENST00000251722 GOLGA1Q92805 767 aa14.27□□□□□ -0.12
USP40-201ENST00000251722 DHX58Q96C10 678 aa14.27□□□□□ -0.12
USP40-201ENST00000251722 DCPSQ96C86 337 aaKnown RBP14.27□□□□□ -0.12
USP40-201ENST00000251722 KRT86O43790 486 aa14.27□□□□□ -0.12
USP40-201ENST00000251722 CIAO1O76071 339 aa14.27□□□□□ -0.12
USP40-201ENST00000251722 CCDC175P0C221 793 aa14.27□□□□□ -0.12
USP40-201ENST00000251722 APOBRQ0VD83 1088 aa14.27□□□□□ -0.12
USP40-201ENST00000251722 SNW1Q13573 536 aaKnown RBP14.27□□□□□ -0.12
USP40-201ENST00000251722 CLUL1Q15846 466 aa14.27□□□□□ -0.12
USP40-201ENST00000251722 CCDC38Q502W7 563 aa14.27□□□□□ -0.12
USP40-201ENST00000251722 ATP8A2Q9NTI2 1148 aa14.27□□□□□ -0.12
USP40-201ENST00000251722 SYNMO15061 1565 aa14.27□□□□□ -0.13
USP40-201ENST00000251722 ZBTB17Q13105 803 aa14.27□□□□□ -0.13
USP40-201ENST00000251722 A6NNZ2 444 aa14.27□□□□□ -0.13
USP40-201ENST00000251722 GIGYF1O75420 1035 aaPredicted RBP14.27□□□□□ -0.13
USP40-201ENST00000251722 CCT6AP40227 531 aaKnown RBP14.27□□□□□ -0.13
USP40-201ENST00000251722 AK2P54819 239 aa14.27□□□□□ -0.13
USP40-201ENST00000251722 TUBB8Q3ZCM7 444 aa14.27□□□□□ -0.13
USP40-201ENST00000251722 B4GALNT4Q76KP1 1039 aa14.27□□□□□ -0.13
USP40-201ENST00000251722 KIF1BO60333 1816 aa14.27□□□□□ -0.13
USP40-201ENST00000251722 KDM3AQ9Y4C1 1321 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 MCM7P33993 719 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 GPR162Q16538 588 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 RAB11FIP4Q86YS3 637 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 CSRNP2Q9H175 543 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 LGR6Q9HBX8 967 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 XDHP47989 1333 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 BBOX1O75936 387 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 ARMT1Q9H993 441 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 SAP30BPQ9UHR5 308 aaKnown RBP14.26□□□□□ -0.13
USP40-201ENST00000251722 JRKLQ9Y4A0 524 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 U2AF2P26368 475 aaKnown RBP eCLIP14.26□□□□□ -0.132e-6■■■□□ 15.3
USP40-201ENST00000251722 SUCLG2Q96I99 432 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 NT5C3AQ9H0P0 336 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 ARHGEF35A5YM69 484 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 ADCY5O95622 1261 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 OTUD6AQ7L8S5 288 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 LMNTD2Q8IXW0 634 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 NCAPD2Q15021 1401 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 GAS8O95995 478 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 CCDC17Q96LX7 622 aa14.26□□□□□ -0.13
USP40-201ENST00000251722 GEMIN8Q9NWZ8 242 aaKnown RBP14.26□□□□□ -0.13
USP40-201ENST00000251722 MRPL11Q9Y3B7 192 aaKnown RBP14.26□□□□□ -0.13
USP40-201ENST00000251722 ERVV-1B6SEH8 477 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 CUTAO60888 179 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 PRPF4BQ13523 1007 aaKnown RBP14.25□□□□□ -0.13
USP40-201ENST00000251722 HLTFQ14527 1009 aaKnown RBP eCLIP14.25□□□□□ -0.13
USP40-201ENST00000251722 CHD1O14646 1710 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 LOC102724428A0A0B4J2F2 783 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 ATP2A2P16615 1042 aaKnown RBP14.25□□□□□ -0.13
USP40-201ENST00000251722 SIK1P57059 783 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 WHAMMP3Q1A5X7 153 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 SPECC1Q5M775 1068 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 CCDC121Q6ZUS5 278 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 DBNDD2Q9BQY9 259 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 LRRC2Q9BYS8 371 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 GPCPD1Q9NPB8 672 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 BIRC2Q13490 618 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 KRT27Q7Z3Y8 459 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 ARHGEF25Q86VW2 580 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 TM6SF1Q9BZW5 370 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.25□□□□□ -0.13
USP40-201ENST00000251722 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.25□□□□□ -0.13
USP40-201ENST00000251722 USP6P35125 1406 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 CCNA1P78396 465 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 NCAPGQ9BPX3 1015 aa14.25□□□□□ -0.13
USP40-201ENST00000251722 ATG3Q9NT62 314 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms