RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Abca17E9PX95 1733 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 PpardP35396 440 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Znf667Q2TL60 609 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Tmod2Q9JKK7 351 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 InhbeO08717 350 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Large2Q5XPT3 690 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Ppp2r5bQ6PD28 497 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Calml3Q9D6P8 149 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Eid1Q9DCR4 169 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Tacc2Q9JJG0 1149 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Add3Q9QYB5 706 aaKnown RBP17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Flt4P35917 1363 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Cyp2j7A0A140T8U1 504 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Clic6Q8BHB9 596 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Lrrd1Q8C0R9 853 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Rassf4Q8CB96 322 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Hps4Q99KG7 671 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Ehbp1l1Q99MS7 1716 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 LdhaP06151 332 aaKnown RBP17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Il15P48346 162 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Lrrc8aQ80WG5 810 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Stn1Q8K2X3 378 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Kiaa1024Q8K3V7 917 aa17.48■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Zfp853A0A1D5RM95 733 aa17.47■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 ClasrpQ8CFC7 668 aa17.47■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Ube4aE9Q735 1028 aa17.47■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Ms4a1P19437 291 aa17.47■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Mybl2P48972 704 aa17.47■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 ErmnQ5EBJ4 281 aa17.47■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 DnmbpQ6TXD4 1580 aa17.47■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Zcrb1Q9CZ96 217 aaKnown RBP17.47■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Uso1Q9Z1Z0 959 aaKnown RBP17.47■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Suclg2Q9Z2I8 433 aa17.47■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Ppfibp2O35711 882 aa17.47■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Foxp1P58462 705 aa17.47■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Uba5Q8VE47 403 aa17.46■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Adarb2Q9JI20 745 aa17.46■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Col20a1Q923P0 1320 aa17.46■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Akap2O54931 893 aa17.46■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Slc27a3O88561 667 aa17.46■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Dok7Q18PE0 504 aa17.46■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Matr3Q8K310 846 aaKnown RBP17.46■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Fam107bQ3TGF2 131 aa17.46■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Nlrp9bQ66X22 1003 aa17.46■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Ubxn10Q8BG34 277 aa17.46■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Hps3Q91VB4 1002 aa17.46■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Znf541Q0GGX2 1363 aa17.46■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Gm10378F6XQQ1 160 aa17.46■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Cep128Q8BI22 1102 aa17.46■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Pnpla2Q8BJ56 486 aa17.46■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Med23Q80YQ2 1367 aa17.45■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Kdm1aQ6ZQ88 853 aa17.45■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Capza3P70190 299 aa17.45■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Ctage5Q8R311 779 aa17.45■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Calml4Q91WQ9 153 aa17.45■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Mx2Q9WVP9 655 aa17.45■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Ccne2Q9Z238 404 aa17.45■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Stat5bP42232 786 aa17.45■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Plcb3P51432 1234 aaKnown RBP17.45■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Ctdspl2Q8BG15 465 aa17.45■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 RalylQ8BTF8 293 aa17.45■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 IcoslgQ9JHJ8 322 aa17.45■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Efcc1Q9JJF6 558 aa17.45■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Pdcd11Q6NS46 1862 aaKnown RBP17.44■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Hmgb1P63158 215 aaKnown RBP17.44■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Brinp3Q499E0 766 aa17.44■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Vps37cQ8R105 352 aa17.44■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Arpp21Q9DCB4 807 aa17.44■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Haus6Q6NV99 933 aaKnown RBP17.44■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Lman1Q9D0F3 517 aa17.44■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Sorbs3Q9R1Z8 733 aa17.44■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Prdm11A2AGX3 565 aa17.44■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Skor1Q8BX46 964 aa17.44■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Gimap7Q8R379 293 aa17.44■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Smc1aQ9CU62 1233 aaKnown RBP17.44■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Pdcd6ipQ9WU78 869 aaKnown RBP17.44■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Gm43638A0A0J9YU36 694 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Slc27a1Q60714 646 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Arhgef6Q8K4I3 771 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Mroh6V9GX81 722 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 PcQ05920 1178 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Specc1lQ2KN98 1118 aaKnown RBP17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Mcm7Q61881 719 aaKnown RBP17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Trak2Q6P9N8 913 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Acbd3Q8BMP6 525 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Usp44Q8C2S0 711 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 NapaQ9DB05 295 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Cyp2c23E9Q5K4 494 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Fam83bQ0VBM2 1012 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Ctdnep1Q3TP92 244 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Atp2b4Q6Q477 1205 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Ppm1mQ8BU27 406 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 AbraQ8BUZ1 375 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Mettl5Q8K1A0 209 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Syce1Q9D495 329 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Hook3Q8BUK6 718 aa17.43■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Sap30bpQ02614 308 aa17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 1700013D24RikQ0P521 120 aa17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Olfr118Q7TRJ6 321 aa17.42■□□□□ 0.38
Ccdc88b-201ENSMUST00000113440 Eaf2Q91ZD6 262 aa17.42■□□□□ 0.38
Retrieved 100 of 22,080 RNA–protein pairs in 16.2 ms