RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-233	ENST00000642021	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.6	□□□□□ -1.67
PHGDH-233	ENST00000642021	KRTAP19-6	Q3LI70	58 aa		4.58	□□□□□ -1.68
PHGDH-233	ENST00000642021	KRTAP4-3	Q9BYR4	195 aa		4.58	□□□□□ -1.68
PHGDH-233	ENST00000642021	MUC12	Q9UKN1	5478 aa		4.58	□□□□□ -1.68
PHGDH-233	ENST00000642021	LOC100996750	A0A140TA64	210 aa		4.57	□□□□□ -1.68
PHGDH-233	ENST00000642021	LCE2D	Q5TA82	110 aa	Predicted RBP	4.52	□□□□□ -1.69
PHGDH-233	ENST00000642021	MT1G	P13640	62 aa		4.49	□□□□□ -1.69
PHGDH-233	ENST00000642021	MT1M	Q8N339	61 aa		4.43	□□□□□ -1.7
PHGDH-233	ENST00000642021	DST	Q03001	7570 aa	Known RBP	4.42	□□□□□ -1.7
PHGDH-233	ENST00000642021	KRTAP19-3	Q7Z4W3	81 aa		4.42	□□□□□ -1.7
PHGDH-233	ENST00000642021	CRCT1	Q9UGL9	99 aa		4.4	□□□□□ -1.71
PHGDH-233	ENST00000642021	LCE5A	Q5TCM9	118 aa		4.27	□□□□□ -1.73
PHGDH-233	ENST00000642021	SPRR2F	Q96RM1	72 aa		4.24	□□□□□ -1.73
PHGDH-233	ENST00000642021	KRTAP12-4	P60329	112 aa		4.24	□□□□□ -1.73
PHGDH-233	ENST00000642021	MACF1	Q9UPN3	7388 aa	Known RBP	4.22	□□□□□ -1.73
PHGDH-233	ENST00000642021	KRTAP2-2	Q9BYT5	123 aa		4.19	□□□□□ -1.74
PHGDH-233	ENST00000642021	LCE3B	Q5TA77	95 aa		4.16	□□□□□ -1.74
PHGDH-233	ENST00000642021	SYNE1	Q8NF91	8797 aa	Known RBP	4.15	□□□□□ -1.75
PHGDH-233	ENST00000642021	KRTAP4-9	Q9BYQ8	210 aa		4.14	□□□□□ -1.75
PHGDH-233	ENST00000642021	MDN1	Q9NU22	5596 aa		4.14	□□□□□ -1.75
PHGDH-233	ENST00000642021	SYNE2	Q8WXH0	6885 aa	Known RBP	4.13	□□□□□ -1.75
PHGDH-233	ENST00000642021	LCE1A	Q5T7P2	110 aa		4.08	□□□□□ -1.76
PHGDH-233	ENST00000642021	KRTAP6-1	Q3LI64	71 aa		4.07	□□□□□ -1.76
PHGDH-233	ENST00000642021	KRTAP6-3	Q3LI67	103 aa		4.07	□□□□□ -1.76
PHGDH-233	ENST00000642021	MT1A	P04731	61 aa		3.99	□□□□□ -1.77
PHGDH-233	ENST00000642021	KRTAP9-6	A0A140TA67	174 aa		3.95	□□□□□ -1.78
PHGDH-233	ENST00000642021	KRTAP9-2	Q9BYQ4	174 aa		3.94	□□□□□ -1.78
PHGDH-233	ENST00000642021	LCE1E	Q5T753	118 aa		3.91	□□□□□ -1.78
PHGDH-233	ENST00000642021	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.91	□□□□□ -1.78
PHGDH-233	ENST00000642021	LCE3D	Q9BYE3	92 aa		3.91	□□□□□ -1.78
PHGDH-233	ENST00000642021	KRTAP5-9	P26371	169 aa		3.87	□□□□□ -1.79
PHGDH-233	ENST00000642021	LCE3E	Q5T5B0	92 aa		3.86	□□□□□ -1.79
PHGDH-233	ENST00000642021	KRTAP9-7	A8MTY7	169 aa		3.83	□□□□□ -1.8
PHGDH-233	ENST00000642021	SPRR2E	P22531	72 aa		3.8	□□□□□ -1.8
PHGDH-233	ENST00000642021	SPRR2B	P35325	72 aa		3.8	□□□□□ -1.8
PHGDH-233	ENST00000642021	SPRR2A	P35326	72 aa		3.8	□□□□□ -1.8
PHGDH-233	ENST00000642021	OBSCN	Q5VST9	7968 aa		3.79	□□□□□ -1.8
PHGDH-233	ENST00000642021	PRM1	P04553	51 aa		3.79	□□□□□ -1.8
PHGDH-233	ENST00000642021	LCE1D	Q5T752	114 aa		3.74	□□□□□ -1.81
PHGDH-233	ENST00000642021	KRTAP9-4	Q9BYQ2	154 aa		3.74	□□□□□ -1.81
PHGDH-233	ENST00000642021	KRTAP6-2	Q3LI66	62 aa		3.64	□□□□□ -1.83
PHGDH-233	ENST00000642021	SPRR2D	P22532	72 aa		3.63	□□□□□ -1.83
PHGDH-233	ENST00000642021	MT3	P25713	68 aa		3.56	□□□□□ -1.84
PHGDH-233	ENST00000642021	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	3.54	□□□□□ -1.84
PHGDH-233	ENST00000642021	LCE1F	Q5T754	118 aa		3.54	□□□□□ -1.84
PHGDH-233	ENST00000642021	KRTAP5-4	Q6L8H1	288 aa		3.38	□□□□□ -1.87
PHGDH-233	ENST00000642021	KRTAP4-6	Q9BYQ5	205 aa		3.32	□□□□□ -1.88
PHGDH-233	ENST00000642021	NEB	P20929	6669 aa		3.29	□□□□□ -1.88
PHGDH-233	ENST00000642021	MT4	P47944	62 aa		3.25	□□□□□ -1.89
PHGDH-233	ENST00000642021	KRTAP20-2	Q3LI61	65 aa		3.19	□□□□□ -1.9
PHGDH-233	ENST00000642021	KRTAP5-2	Q701N4	177 aa		3.17	□□□□□ -1.9
PHGDH-233	ENST00000642021	HMCN1	Q96RW7	5635 aa		3.15	□□□□□ -1.9
PHGDH-233	ENST00000642021	MUC5AC	P98088	5654 aa		3.1	□□□□□ -1.91
PHGDH-233	ENST00000642021	LCE4A	Q5TA78	99 aa		3.09	□□□□□ -1.91
PHGDH-233	ENST00000642021	KRTAP5-3	Q6L8H2	238 aa		3.04	□□□□□ -1.92
PHGDH-233	ENST00000642021	KRTAP20-1	Q3LI63	56 aa		2.94	□□□□□ -1.94
PHGDH-233	ENST00000642021	MUC19	Q7Z5P9	8384 aa		2.93	□□□□□ -1.94
PHGDH-233	ENST00000642021	LCE1B	Q5T7P3	118 aa		2.9	□□□□□ -1.94
PHGDH-233	ENST00000642021	KRTAP5-10	Q6L8G5	202 aa		2.87	□□□□□ -1.95
PHGDH-233	ENST00000642021	KRTAP4-11	Q9BYQ6	195 aa		2.85	□□□□□ -1.95
PHGDH-233	ENST00000642021	KRTAP5-1	Q6L8H4	278 aa		2.81	□□□□□ -1.96
PHGDH-233	ENST00000642021	KRTAP4-2	Q9BYR5	136 aa		2.78	□□□□□ -1.97
PHGDH-233	ENST00000642021	LCE1C	Q5T751	118 aa		2.73	□□□□□ -1.97
PHGDH-233	ENST00000642021	KRTAP21-2	Q3LI59	83 aa		2.62	□□□□□ -1.99
PHGDH-233	ENST00000642021	KRTAP9-9	Q9BYP9	154 aa		2.61	□□□□□ -1.99
PHGDH-233	ENST00000642021	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.57	□□□□□ -2
PHGDH-233	ENST00000642021	KRTAP5-8	O75690	187 aa		2.5	□□□□□ -2.01
PHGDH-233	ENST00000642021	KRTAP4-4	Q9BYR3	166 aa		2.44	□□□□□ -2.02
PHGDH-233	ENST00000642021	AHNAK2	Q8IVF2	5795 aa		2.44	□□□□□ -2.02
PHGDH-233	ENST00000642021	KRTAP5-7	Q6L8G8	165 aa		2.44	□□□□□ -2.02
PHGDH-233	ENST00000642021	KRTAP21-1	Q3LI58	79 aa		2.42	□□□□□ -2.02
PHGDH-233	ENST00000642021	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.37	□□□□□ -2.03
PHGDH-233	ENST00000642021	KRTAP5-11	Q6L8G4	156 aa		2.32	□□□□□ -2.04
PHGDH-233	ENST00000642021	KRTAP4-12	Q9BQ66	201 aa		2.27	□□□□□ -2.05
PHGDH-233	ENST00000642021	GPR98	Q8WXG9	6306 aa		2.12	□□□□□ -2.07
PHGDH-233	ENST00000642021	PHGR1	C9JFL3	82 aa		2.03	□□□□□ -2.09
PHGDH-233	ENST00000642021	AHNAK	Q09666	5890 aa	Known RBP	1.74	□□□□□ -2.13
PHGDH-233	ENST00000642021	MUC16	Q8WXI7	14507 aa		1.34	□□□□□ -2.19

Retrieved 78 of 20,778 RNA–protein pairs in 63.1 ms