RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-233ENST00000642021 FCGBPQ9Y6R7 5405 aaPredicted RBP4.6□□□□□ -1.67
PHGDH-233ENST00000642021 KRTAP19-6Q3LI70 58 aa4.58□□□□□ -1.68
PHGDH-233ENST00000642021 KRTAP4-3Q9BYR4 195 aa4.58□□□□□ -1.68
PHGDH-233ENST00000642021 MUC12Q9UKN1 5478 aa4.58□□□□□ -1.68
PHGDH-233ENST00000642021 LOC100996750A0A140TA64 210 aa4.57□□□□□ -1.68
PHGDH-233ENST00000642021 LCE2DQ5TA82 110 aaPredicted RBP4.52□□□□□ -1.69
PHGDH-233ENST00000642021 MT1GP13640 62 aa4.49□□□□□ -1.69
PHGDH-233ENST00000642021 MT1MQ8N339 61 aa4.43□□□□□ -1.7
PHGDH-233ENST00000642021 DSTQ03001 7570 aaKnown RBP4.42□□□□□ -1.7
PHGDH-233ENST00000642021 KRTAP19-3Q7Z4W3 81 aa4.42□□□□□ -1.7
PHGDH-233ENST00000642021 CRCT1Q9UGL9 99 aa4.4□□□□□ -1.71
PHGDH-233ENST00000642021 LCE5AQ5TCM9 118 aa4.27□□□□□ -1.73
PHGDH-233ENST00000642021 SPRR2FQ96RM1 72 aa4.24□□□□□ -1.73
PHGDH-233ENST00000642021 KRTAP12-4P60329 112 aa4.24□□□□□ -1.73
PHGDH-233ENST00000642021 MACF1Q9UPN3 7388 aaKnown RBP4.22□□□□□ -1.73
PHGDH-233ENST00000642021 KRTAP2-2Q9BYT5 123 aa4.19□□□□□ -1.74
PHGDH-233ENST00000642021 LCE3BQ5TA77 95 aa4.16□□□□□ -1.74
PHGDH-233ENST00000642021 SYNE1Q8NF91 8797 aaKnown RBP4.15□□□□□ -1.75
PHGDH-233ENST00000642021 KRTAP4-9Q9BYQ8 210 aa4.14□□□□□ -1.75
PHGDH-233ENST00000642021 MDN1Q9NU22 5596 aa4.14□□□□□ -1.75
PHGDH-233ENST00000642021 SYNE2Q8WXH0 6885 aaKnown RBP4.13□□□□□ -1.75
PHGDH-233ENST00000642021 LCE1AQ5T7P2 110 aa4.08□□□□□ -1.76
PHGDH-233ENST00000642021 KRTAP6-1Q3LI64 71 aa4.07□□□□□ -1.76
PHGDH-233ENST00000642021 KRTAP6-3Q3LI67 103 aa4.07□□□□□ -1.76
PHGDH-233ENST00000642021 MT1AP04731 61 aa3.99□□□□□ -1.77
PHGDH-233ENST00000642021 KRTAP9-6A0A140TA67 174 aa3.95□□□□□ -1.78
PHGDH-233ENST00000642021 KRTAP9-2Q9BYQ4 174 aa3.94□□□□□ -1.78
PHGDH-233ENST00000642021 LCE1EQ5T753 118 aa3.91□□□□□ -1.78
PHGDH-233ENST00000642021 KRTAP5-5Q701N2 237 aaPredicted RBP3.91□□□□□ -1.78
PHGDH-233ENST00000642021 LCE3DQ9BYE3 92 aa3.91□□□□□ -1.78
PHGDH-233ENST00000642021 KRTAP5-9P26371 169 aa3.87□□□□□ -1.79
PHGDH-233ENST00000642021 LCE3EQ5T5B0 92 aa3.86□□□□□ -1.79
PHGDH-233ENST00000642021 KRTAP9-7A8MTY7 169 aa3.83□□□□□ -1.8
PHGDH-233ENST00000642021 SPRR2EP22531 72 aa3.8□□□□□ -1.8
PHGDH-233ENST00000642021 SPRR2BP35325 72 aa3.8□□□□□ -1.8
PHGDH-233ENST00000642021 SPRR2AP35326 72 aa3.8□□□□□ -1.8
PHGDH-233ENST00000642021 OBSCNQ5VST9 7968 aa3.79□□□□□ -1.8
PHGDH-233ENST00000642021 PRM1P04553 51 aa3.79□□□□□ -1.8
PHGDH-233ENST00000642021 LCE1DQ5T752 114 aa3.74□□□□□ -1.81
PHGDH-233ENST00000642021 KRTAP9-4Q9BYQ2 154 aa3.74□□□□□ -1.81
PHGDH-233ENST00000642021 KRTAP6-2Q3LI66 62 aa3.64□□□□□ -1.83
PHGDH-233ENST00000642021 SPRR2DP22532 72 aa3.63□□□□□ -1.83
PHGDH-233ENST00000642021 MT3P25713 68 aa3.56□□□□□ -1.84
PHGDH-233ENST00000642021 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.54□□□□□ -1.84
PHGDH-233ENST00000642021 LCE1FQ5T754 118 aa3.54□□□□□ -1.84
PHGDH-233ENST00000642021 KRTAP5-4Q6L8H1 288 aa3.38□□□□□ -1.87
PHGDH-233ENST00000642021 KRTAP4-6Q9BYQ5 205 aa3.32□□□□□ -1.88
PHGDH-233ENST00000642021 NEBP20929 6669 aa3.29□□□□□ -1.88
PHGDH-233ENST00000642021 MT4P47944 62 aa3.25□□□□□ -1.89
PHGDH-233ENST00000642021 KRTAP20-2Q3LI61 65 aa3.19□□□□□ -1.9
PHGDH-233ENST00000642021 KRTAP5-2Q701N4 177 aa3.17□□□□□ -1.9
PHGDH-233ENST00000642021 HMCN1Q96RW7 5635 aa3.15□□□□□ -1.9
PHGDH-233ENST00000642021 MUC5ACP98088 5654 aa3.1□□□□□ -1.91
PHGDH-233ENST00000642021 LCE4AQ5TA78 99 aa3.09□□□□□ -1.91
PHGDH-233ENST00000642021 KRTAP5-3Q6L8H2 238 aa3.04□□□□□ -1.92
PHGDH-233ENST00000642021 KRTAP20-1Q3LI63 56 aa2.94□□□□□ -1.94
PHGDH-233ENST00000642021 MUC19Q7Z5P9 8384 aa2.93□□□□□ -1.94
PHGDH-233ENST00000642021 LCE1BQ5T7P3 118 aa2.9□□□□□ -1.94
PHGDH-233ENST00000642021 KRTAP5-10Q6L8G5 202 aa2.87□□□□□ -1.95
PHGDH-233ENST00000642021 KRTAP4-11Q9BYQ6 195 aa2.85□□□□□ -1.95
PHGDH-233ENST00000642021 KRTAP5-1Q6L8H4 278 aa2.81□□□□□ -1.96
PHGDH-233ENST00000642021 KRTAP4-2Q9BYR5 136 aa2.78□□□□□ -1.97
PHGDH-233ENST00000642021 LCE1CQ5T751 118 aa2.73□□□□□ -1.97
PHGDH-233ENST00000642021 KRTAP21-2Q3LI59 83 aa2.62□□□□□ -1.99
PHGDH-233ENST00000642021 KRTAP9-9Q9BYP9 154 aa2.61□□□□□ -1.99
PHGDH-233ENST00000642021 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.57□□□□□ -2
PHGDH-233ENST00000642021 KRTAP5-8O75690 187 aa2.5□□□□□ -2.01
PHGDH-233ENST00000642021 KRTAP4-4Q9BYR3 166 aa2.44□□□□□ -2.02
PHGDH-233ENST00000642021 AHNAK2Q8IVF2 5795 aa2.44□□□□□ -2.02
PHGDH-233ENST00000642021 KRTAP5-7Q6L8G8 165 aa2.44□□□□□ -2.02
PHGDH-233ENST00000642021 KRTAP21-1Q3LI58 79 aa2.42□□□□□ -2.02
PHGDH-233ENST00000642021 MUC5BQ9HC84 5762 aaPredicted RBP2.37□□□□□ -2.03
PHGDH-233ENST00000642021 KRTAP5-11Q6L8G4 156 aa2.32□□□□□ -2.04
PHGDH-233ENST00000642021 KRTAP4-12Q9BQ66 201 aa2.27□□□□□ -2.05
PHGDH-233ENST00000642021 GPR98Q8WXG9 6306 aa2.12□□□□□ -2.07
PHGDH-233ENST00000642021 PHGR1C9JFL3 82 aa2.03□□□□□ -2.09
PHGDH-233ENST00000642021 AHNAKQ09666 5890 aaKnown RBP1.74□□□□□ -2.13
PHGDH-233ENST00000642021 MUC16Q8WXI7 14507 aa1.34□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 11.7 ms